AlfalfaGEDB | MsaG017164

M. sativa ssp. caerulea / MsaG017164

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00072.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017164	XP_003603312.1	98.295	645	11	0	1	645	1	645	0.0	1315

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017164	sp\|Q6K8X6\|ORR23_ORYSJ	60.000	375	129	9	6	363	18	388	1.33e-136	418

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017164	tr\|G7J9W3\|G7J9W3_MEDTR	98.295	645	11	0	1	645	1	645	0.0	1315

TFs/TRs:

Gene ID	Type	Classification
MsaG017164	TF	GARP-ARR-B

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG002732	MsaG017164	0.805809	1.889001e-49	2.918263e-47
MsaG004400	MsaG017164	0.809599	2.984132e-50	5.046943e-48
MsaG004776	MsaG017164	0.806734	1.208391e-49	1.908126e-47
MsaG006517	MsaG017164	0.801193	1.692756e-48	2.351159e-46
MsaG007191	MsaG017164	0.810307	2.104675e-50	3.621149e-48
MsaG009230	MsaG017164	0.814231	2.955603e-51	5.604002e-49
MsaG009737	MsaG017164	0.813049	5.363710e-51	9.873123e-49
MsaG011014	MsaG017164	0.815678	1.416113e-51	2.784902e-49
MsaG011346	MsaG017164	0.804400	3.712521e-49	5.550575e-47
MsaG011405	MsaG017164	0.809959	2.498690e-50	4.262819e-48
MsaG011580	MsaG017164	0.801721	1.321310e-48	1.857354e-46
MsaG011773	MsaG017164	0.808125	6.145963e-50	1.003186e-47
MsaG012454	MsaG017164	0.807959	6.665423e-50	1.083624e-47
MsaG016766	MsaG017164	0.810709	1.724258e-50	2.995874e-48
MsaG017164	MsaG018221	0.813880	3.529211e-51	6.633091e-49
MsaG017164	MsaG018842	0.816588	8.888226e-52	1.788927e-49
MsaG017164	MsaG022245	0.805549	2.139875e-49	3.285788e-47
MsaG017164	MsaG022246	0.805370	2.332861e-49	3.567242e-47
MsaG017164	MsaG023100	0.805625	2.063529e-49	3.174260e-47
MsaG017164	MsaG024009	0.812470	7.172430e-51	1.301347e-48
MsaG017164	MsaG026797	0.810050	2.389374e-50	4.085260e-48
MsaG017164	MsaG028370	0.809788	2.718765e-50	4.619228e-48
MsaG017164	MsaG033639	0.800858	1.980924e-48	2.730685e-46
MsaG017164	MsaG035749	0.813212	4.943552e-51	9.136713e-49
MsaG017164	MsaG042116	0.813097	5.237509e-51	9.652272e-49
MsaG017164	MsaG046867	0.800525	2.314067e-48	3.166071e-46
MsaG017164	MsaG008828	0.808526	5.051004e-50	8.324658e-48
MsaG017164	MsaG010534	0.804255	3.977330e-49	5.926792e-47
MsaG017164	MsaG008855	0.813421	4.448918e-51	8.265775e-49
MsaG017164	MsaG011549	0.842441	4.801244e-58	2.025140e-55
MsaG017164	MsaG033256	0.812310	7.772106e-51	1.404483e-48
MsaG017164	MsaG031428	0.836244	1.916044e-56	6.662266e-54

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017164	MtrunA17_Chr3g0137101	98.295	645	11	0	1	645	1	645	0.0	1315
MsaG017164	MtrunA17_Chr1g0149841	48.048	589	195	17	6	577	3	497	7.49e-150	442
MsaG017164	MtrunA17_Chr2g0304841	39.485	699	332	17	6	642	16	685	5.91e-134	408
MsaG017164	MtrunA17_Chr1g0149851	52.466	446	151	14	6	413	3	425	9.53e-125	380
MsaG017164	MtrunA17_Chr1g0149851	32.836	201	82	11	434	620	365	526	2.99e-11	66.2
MsaG017164	MtrunA17_Chr7g0275891	56.863	357	103	7	5	338	2	330	5.21e-115	348
MsaG017164	MtrunA17_Chr2g0294911	48.747	359	149	7	6	357	27	357	4.38e-100	318
MsaG017164	MtrunA17_Chr4g0067981	57.934	271	82	3	6	263	29	280	2.59e-98	315
MsaG017164	MtrunA17_Chr1g0161431	55.290	293	119	3	4	286	7	297	7.31e-98	313
MsaG017164	MtrunA17_Chr7g0275401	54.167	312	111	5	6	315	3	284	1.55e-96	298
MsaG017164	MtrunA17_Chr4g0074411	41.283	499	261	11	2	489	12	489	6.39e-96	307
MsaG017164	MtrunA17_Chr4g0074401	50.760	329	146	4	8	328	17	337	1.10e-91	295
MsaG017164	MtrunA17_Chr3g0123131	53.289	304	115	5	8	310	13	290	3.04e-91	293
MsaG017164	MtrunA17_Chr8g0376881	56.343	268	95	4	6	265	23	276	4.90e-89	287
MsaG017164	MtrunA17_Chr3g0134461	59.677	248	43	3	1	247	1	192	2.13e-78	247
MsaG017164	MtrunA17_Chr1g0149831	65.672	201	60	3	67	266	1	193	3.45e-76	243
MsaG017164	MtrunA17_Chr3g0134481	83.459	133	22	0	1	133	1	133	4.05e-69	223
MsaG017164	MtrunA17_Chr3g0134481	73.585	53	14	0	197	249	131	183	1.37e-20	90.1
MsaG017164	MtrunA17_Chr4g0074421	56.923	195	75	3	58	252	2	187	7.41e-62	204
MsaG017164	MtrunA17_Chr4g0009851	41.700	247	112	4	8	254	11	225	3.24e-52	182
MsaG017164	MtrunA17_Chr4g0009901	39.516	248	118	3	8	255	10	225	1.28e-47	168
MsaG017164	MtrunA17_Chr4g0009981	40.099	202	90	3	53	254	2	172	7.76e-39	144
MsaG017164	MtrunA17_Chr6g0471041	36.078	255	129	5	1	254	7	228	3.62e-38	146
MsaG017164	MtrunA17_Chr8g0391911	34.231	260	151	5	5	257	6	252	1.74e-33	129
MsaG017164	MtrunA17_Chr8g0350761	29.297	256	161	6	11	250	20	271	1.58e-25	110
MsaG017164	MtrunA17_Chr6g0473731	34.706	170	84	3	88	256	10	153	6.78e-24	105
MsaG017164	MtrunA17_Chr3g0127941	31.677	161	98	3	12	161	56	215	4.80e-23	104
MsaG017164	MtrunA17_Chr4g0031961	46.667	105	53	1	164	265	94	198	3.60e-22	97.8
MsaG017164	MtrunA17_Chr6g0469321	66.667	75	24	1	214	287	70	144	5.66e-22	93.6
MsaG017164	MtrunA17_Chr4g0011071	32.934	167	81	3	58	224	39	174	7.85e-22	93.2
MsaG017164	MtrunA17_Chr7g0276361	32.039	206	115	5	1	198	1	189	1.46e-21	99.4
MsaG017164	MtrunA17_Chr6g0456631	33.548	155	96	4	5	157	6	155	1.64e-21	92.0
MsaG017164	MtrunA17_Chr1g0181811	37.705	122	73	2	12	130	85	206	1.74e-21	99.4
MsaG017164	MtrunA17_Chr8g0383961	36.923	130	82	0	1	130	7	136	1.89e-21	94.7
MsaG017164	MtrunA17_Chr4g0030271	39.344	122	71	1	12	130	89	210	2.15e-21	99.4
MsaG017164	MtrunA17_Chr7g0255711	56.000	75	32	1	186	259	78	152	5.00e-21	94.0
MsaG017164	MtrunA17_Chr8g0345901	34.868	152	88	2	14	162	38	181	7.62e-21	97.1
MsaG017164	MtrunA17_Chr3g0091641	34.677	124	78	1	12	132	24	147	1.68e-19	92.8
MsaG017164	MtrunA17_Chr4g0009991	36.486	148	62	2	100	247	1	116	2.05e-19	84.7
MsaG017164	MtrunA17_Chr4g0061021	33.582	134	84	2	4	132	23	156	6.35e-18	87.8
MsaG017164	MtrunA17_Chr2g0324891	45.455	88	48	0	178	265	141	228	8.13e-18	86.3
MsaG017164	MtrunA17_Chr4g0040481	50.685	73	36	0	193	265	153	225	8.35e-18	86.3
MsaG017164	MtrunA17_Chr5g0400241	56.061	66	29	0	191	256	304	369	9.88e-18	87.0
MsaG017164	MtrunA17_Chr5g0400241	37.097	124	74	2	8	130	14	134	1.74e-13	73.6
MsaG017164	MtrunA17_Chr4g0054981	60.656	61	24	0	196	256	308	368	3.21e-17	85.5
MsaG017164	MtrunA17_Chr4g0054981	33.065	124	79	2	8	130	14	134	5.40e-12	68.9
MsaG017164	MtrunA17_Chr4g0010001	39.506	81	48	1	8	88	10	89	5.42e-14	68.2
MsaG017164	MtrunA17_Chr5g0402631	39.200	125	64	5	197	318	213	328	1.03e-13	73.2
MsaG017164	MtrunA17_Chr1g0198601	45.679	81	42	2	191	269	204	284	1.38e-13	72.8
MsaG017164	MtrunA17_Chr5g0423031	38.000	100	56	3	8	106	10	104	1.51e-13	69.7
MsaG017164	MtrunA17_Chr7g0274471	62.500	56	20	1	196	250	216	271	3.49e-13	72.0
MsaG017164	MtrunA17_Chr1g0190301	56.897	58	24	1	194	250	171	228	8.99e-13	70.5
MsaG017164	MtrunA17_Chr5g0422621	40.230	87	50	2	185	270	186	271	1.31e-12	69.7
MsaG017164	MtrunA17_Chr4g0045361	38.318	107	50	3	197	298	273	368	1.39e-12	70.1
MsaG017164	MtrunA17_Chr7g0261911	53.968	63	28	1	194	255	258	320	2.27e-12	69.7
MsaG017164	MtrunA17_Chr5g0417521	50.847	59	28	1	194	251	11	69	1.41e-11	66.6
MsaG017164	MtrunA17_Chr3g0134471	48.485	66	10	1	246	311	4	45	3.16e-11	58.9
MsaG017164	MtrunA17_Chr8g0352871	28.571	161	88	3	14	147	11	171	3.17e-11	62.8
MsaG017164	MtrunA17_Chr4g0062921	48.387	62	31	1	197	257	234	295	3.66e-11	65.9
MsaG017164	MtrunA17_Chr2g0321461	49.153	59	29	1	194	251	41	99	6.98e-11	64.7
MsaG017164	MtrunA17_Chr6g0461641	49.153	59	29	1	194	251	38	96	7.04e-11	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017164	AT2G25180.1	52.523	436	156	13	6	419	11	417	2.75e-127	389
MsaG017164	AT4G31920.1	52.846	369	110	9	6	355	11	334	1.92e-108	338
MsaG017164	AT3G16857.1	55.674	282	93	5	8	266	33	305	1.02e-94	306
MsaG017164	AT3G16857.2	55.674	282	93	5	8	266	33	305	2.51e-94	305
MsaG017164	AT5G58080.1	49.319	367	145	9	2	349	8	352	4.45e-92	298
MsaG017164	AT2G01760.1	56.538	260	110	3	6	262	5	264	3.35e-86	275
MsaG017164	AT1G67710.1	57.769	251	97	4	9	256	8	252	7.40e-82	268
MsaG017164	AT2G01760.2	51.042	288	110	4	6	262	5	292	5.71e-80	259
MsaG017164	AT3G16857.3	54.733	243	78	5	47	266	2	235	3.11e-75	253
MsaG017164	AT2G01760.3	54.774	199	87	3	67	262	1	199	2.10e-56	194
MsaG017164	AT1G67710.2	57.513	193	73	4	67	256	1	187	3.14e-55	195
MsaG017164	AT5G49240.1	39.167	240	141	2	8	247	38	272	1.51e-51	180
MsaG017164	AT3G62670.1	35.032	314	169	8	2	306	31	318	4.24e-42	158
MsaG017164	AT1G67710.3	52.601	173	73	4	87	256	12	178	5.23e-41	155
MsaG017164	AT1G49190.1	35.547	256	150	5	7	255	29	276	6.52e-40	151
MsaG017164	AT5G07210.2	29.683	347	197	10	10	328	14	341	1.86e-34	139
MsaG017164	AT5G07210.1	29.014	355	197	11	10	328	14	349	5.13e-32	132
MsaG017164	AT2G27070.1	30.576	278	154	8	10	256	14	283	3.47e-28	120
MsaG017164	AT2G46790.3	36.082	194	99	6	12	185	37	225	2.00e-25	110
MsaG017164	AT2G46790.1	36.082	194	99	6	12	185	37	225	2.48e-25	110
MsaG017164	AT1G49190.2	39.200	125	76	0	7	131	29	153	3.99e-25	110
MsaG017164	AT5G24470.1	35.294	170	94	5	6	168	42	202	1.26e-23	105
MsaG017164	AT5G59570.2	55.172	87	36	2	180	263	120	206	4.07e-23	100
MsaG017164	AT5G59570.1	55.172	87	36	2	180	263	120	206	4.07e-23	100
MsaG017164	AT3G46640.2	52.381	84	40	0	182	265	128	211	1.02e-22	100
MsaG017164	AT3G46640.1	52.381	84	40	0	182	265	128	211	1.02e-22	100
MsaG017164	AT3G46640.3	53.086	81	38	0	182	262	128	208	1.38e-22	99.8
MsaG017164	AT1G68210.1	26.937	271	171	4	12	257	13	281	5.29e-22	101
MsaG017164	AT5G60100.7	37.795	127	75	2	8	130	59	185	1.33e-21	98.2
MsaG017164	AT5G60100.6	37.795	127	75	2	8	130	59	185	1.33e-21	98.2
MsaG017164	AT5G60100.4	37.795	127	75	2	8	130	59	185	1.33e-21	98.2
MsaG017164	AT5G60100.5	37.795	127	75	2	8	130	59	185	1.70e-21	99.0
MsaG017164	AT5G60100.3	37.795	127	75	2	8	130	59	185	1.70e-21	99.0
MsaG017164	AT5G60100.1	37.795	127	75	2	8	130	59	185	1.70e-21	99.0
MsaG017164	AT5G60100.2	37.795	127	75	2	8	130	59	185	4.42e-21	97.8
MsaG017164	AT2G40970.1	60.606	66	26	0	191	256	98	163	8.22e-21	92.8
MsaG017164	AT5G05090.1	65.000	60	21	0	197	256	80	139	1.16e-20	92.8
MsaG017164	AT3G10760.1	65.000	60	21	0	197	256	104	163	1.20e-20	94.0
MsaG017164	AT5G02810.1	38.525	122	72	1	12	130	78	199	1.43e-20	97.1
MsaG017164	AT5G44190.2	59.155	71	29	0	196	266	145	215	3.65e-20	93.2
MsaG017164	AT5G44190.1	59.155	71	29	0	196	266	145	215	4.77e-20	93.2
MsaG017164	AT5G61380.1	34.677	124	78	1	12	132	19	142	6.17e-19	91.3
MsaG017164	AT2G20570.1	43.878	98	51	1	159	256	118	211	2.07e-17	85.5
MsaG017164	AT4G18020.8	41.748	103	53	1	161	256	252	354	2.94e-16	82.4
MsaG017164	AT4G18020.8	34.559	136	80	3	6	134	12	145	3.28e-13	72.8
MsaG017164	AT4G18020.11	41.748	103	53	1	161	256	252	354	2.94e-16	82.4
MsaG017164	AT4G18020.11	34.559	136	80	3	6	134	12	145	3.28e-13	72.8
MsaG017164	AT4G18020.4	41.748	103	53	1	161	256	252	354	2.94e-16	82.4
MsaG017164	AT4G18020.4	34.559	136	80	3	6	134	12	145	3.28e-13	72.8
MsaG017164	AT4G18020.5	41.748	103	53	1	161	256	252	354	2.94e-16	82.4
MsaG017164	AT4G18020.5	34.559	136	80	3	6	134	12	145	3.28e-13	72.8
MsaG017164	AT4G18020.10	41.748	103	53	1	161	256	252	354	2.94e-16	82.4
MsaG017164	AT4G18020.10	34.559	136	80	3	6	134	12	145	3.28e-13	72.8
MsaG017164	AT4G18020.7	41.748	103	53	1	161	256	252	354	2.94e-16	82.4
MsaG017164	AT4G18020.7	34.559	136	80	3	6	134	12	145	3.28e-13	72.8
MsaG017164	AT4G18020.3	41.748	103	53	1	161	256	252	354	3.51e-16	82.4
MsaG017164	AT4G18020.3	34.559	136	80	3	6	134	12	145	4.99e-13	72.4
MsaG017164	AT4G18020.2	41.748	103	53	1	161	256	252	354	3.51e-16	82.4
MsaG017164	AT4G18020.2	34.559	136	80	3	6	134	12	145	4.99e-13	72.4
MsaG017164	AT4G18020.1	41.748	103	53	1	161	256	252	354	3.51e-16	82.4
MsaG017164	AT4G18020.1	34.559	136	80	3	6	134	12	145	4.99e-13	72.4
MsaG017164	AT4G18020.6	41.748	103	53	1	161	256	252	354	3.51e-16	82.4
MsaG017164	AT4G18020.6	34.559	136	80	3	6	134	12	145	4.99e-13	72.4
MsaG017164	AT4G18020.9	41.748	103	53	1	161	256	252	354	3.51e-16	82.4
MsaG017164	AT4G18020.9	34.559	136	80	3	6	134	12	145	4.99e-13	72.4
MsaG017164	AT2G20570.2	61.404	57	22	0	200	256	171	227	5.95e-16	81.3
MsaG017164	AT1G68670.1	31.818	154	90	4	181	333	198	337	7.32e-13	70.9
MsaG017164	AT4G13640.2	42.708	96	39	3	198	282	37	127	3.02e-12	68.2
MsaG017164	AT4G13640.1	42.708	96	39	3	198	282	37	127	3.04e-12	68.2
MsaG017164	AT1G49560.1	38.182	110	61	3	195	298	189	297	7.70e-12	67.4
MsaG017164	AT3G24120.1	42.105	95	39	3	198	281	41	130	1.25e-11	66.6
MsaG017164	AT3G24120.2	42.105	95	39	3	198	281	41	130	1.27e-11	66.6
MsaG017164	AT1G25550.1	51.667	60	28	1	197	255	208	267	1.45e-11	67.0
MsaG017164	AT3G04030.1	50.847	59	28	1	194	251	41	99	3.05e-11	66.2
MsaG017164	AT2G03500.1	46.875	64	33	1	195	257	230	293	3.52e-11	66.2
MsaG017164	AT3G04030.3	50.847	59	28	1	194	251	41	99	3.55e-11	65.9
MsaG017164	AT4G37180.1	49.180	61	30	1	196	255	208	268	4.49e-11	65.5
MsaG017164	AT4G37180.2	49.180	61	30	1	196	255	215	275	5.81e-11	65.1
MsaG017164	AT4G00760.1	27.670	206	121	8	30	215	1	198	7.01e-11	64.7
MsaG017164	AT1G10470.3	32.061	131	77	2	14	132	22	152	7.45e-11	63.5
MsaG017164	AT1G10470.1	32.061	131	77	2	14	132	36	166	8.50e-11	63.5

Find 163 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGTTGATCCGGGAATTTATT+TGG	0.160454	3:+106405383	None:intergenic
GCAAGATAAGATGAAATTAT+TGG	0.247006	3:-106404083	MsaT017164.1:CDS
TCCAACTTGTCTCATGGTTT+TGG	0.250920	3:-106408028	MsaT017164.1:CDS
TCAAGCGACGTGCCGTTATC+TGG	0.269805	3:-106405164	MsaT017164.1:CDS
ACATTTGGCAGCATGTAATT+AGG	0.295640	3:-106406532	MsaT017164.1:CDS
TCCAGCATGCTTCATTTGTA+TGG	0.304531	3:+106404812	None:intergenic
ATTCCTTGGGAGTGCATATC+TGG	0.307526	3:+106405029	None:intergenic
TATTTGAGAATGGGTGGTTC+TGG	0.310707	3:-106405707	MsaT017164.1:CDS
TTGAAGAGAAAGAATTTGTT+TGG	0.311046	3:+106405138	None:intergenic
CGTTAATCAGAATATTCTTC+AGG	0.324708	3:-106405504	MsaT017164.1:CDS
TGAACTTGTGGGACTTGAAA+TGG	0.326717	3:-106406804	MsaT017164.1:CDS
GCTAGTATGGTGGCAGCCTT+AGG	0.331673	3:-106405746	MsaT017164.1:CDS
GCAGAAAATTCAGATGAAAA+TGG	0.333558	3:-106406419	MsaT017164.1:CDS
GTTGATCCGGGAATTTATTT+GGG	0.335841	3:+106405384	None:intergenic
TCCCATCCCAAATAAATTCC+CGG	0.335864	3:-106405390	MsaT017164.1:CDS
CCCTTGCAAGCGGGGTATCC+TGG	0.337535	3:-106405062	MsaT017164.1:CDS
AATTGTTTAAATTACGTGAT+TGG	0.348210	3:+106405567	None:intergenic
GCAAAACTTGGCCGTTGATC+CGG	0.363698	3:+106405371	None:intergenic
AACTCTCTTGCTCCAGTTAA+CGG	0.366243	3:-106404897	MsaT017164.1:CDS
AGAAGAAGCCTCGGGTTGTT+TGG	0.367984	3:-106406310	MsaT017164.1:CDS
TAGAGGAGCTAAAGAACATT+TGG	0.372140	3:-106406547	MsaT017164.1:CDS
CTGGAATTTAAGTTGATCAT+TGG	0.373200	3:+106405541	None:intergenic
TCCTTCGGGGCTTCTTCAGT+TGG	0.386130	3:-106405591	MsaT017164.1:CDS
CTGAAGAATATTCTGATTAA+CGG	0.389124	3:+106405505	None:intergenic
TCTTGGTTCACTGGAATACT+TGG	0.389557	3:-106404712	MsaT017164.1:CDS
AACGGTAATTTGCCATTTCA+AGG	0.393348	3:-106404978	MsaT017164.1:CDS
CTGCCACCATACTAGCTTGT+TGG	0.395940	3:+106405753	None:intergenic
CGGTCTTCCCATCCTTGAAA+TGG	0.402240	3:+106404966	None:intergenic
GAAAGAAAACACGGAGGTAT+AGG	0.402851	3:-106405281	MsaT017164.1:CDS
GCTGAAACCTGTGAGATTAG+AGG	0.402851	3:-106406564	MsaT017164.1:CDS
TTCTAATAATCTTGGTTCAC+TGG	0.404941	3:-106404721	MsaT017164.1:CDS
ATTCTGATTAACGGGAGTTA+TGG	0.410279	3:+106405514	None:intergenic
CCTTCGGGGCTTCTTCAGTT+GGG	0.414763	3:-106405590	MsaT017164.1:CDS
CAAGATAAGATGAAATTATT+GGG	0.416183	3:-106404082	MsaT017164.1:CDS
ATTTCAGTGTTGTCTGCATA+TGG	0.417968	3:-106406638	MsaT017164.1:intron
CACGCATTCCGATGGGAAAA+CGG	0.428750	3:+106408070	None:intergenic
AAGGTAGGCACGGTGATAAT+TGG	0.437512	3:-106405187	MsaT017164.1:CDS
CGAGGCTTCTTCTGAGCTGA+TGG	0.438400	3:+106406320	None:intergenic
AAACACGGAGGTATAGGAAT+AGG	0.439930	3:-106405275	MsaT017164.1:CDS
TGCAAACCAACAAGCTAGTA+TGG	0.442595	3:-106405759	MsaT017164.1:CDS
AGGTGGAGCTAGTTGTTGTC+TGG	0.446742	3:+106404856	None:intergenic
AGATCAATCTTATTTGAGAA+TGG	0.446802	3:-106405717	MsaT017164.1:CDS
GAACTAGAGGTGGCAAAACT+TGG	0.447157	3:+106405359	None:intergenic
GTTGCTGCTGTTAATCAGTT+AGG	0.449852	3:-106406263	MsaT017164.1:CDS
TGAAGAATATTCTGATTAAC+GGG	0.453613	3:+106405506	None:intergenic
GATCAATCTTATTTGAGAAT+GGG	0.453918	3:-106405716	MsaT017164.1:CDS
ATCCGGGAATTTATTTGGGA+TGG	0.454627	3:+106405388	None:intergenic
AGCTTAAATCCATCCATGTC+AGG	0.455967	3:+106406830	None:intergenic
GGTAAGTAGCATCCTGATTA+CGG	0.456384	3:+106404946	None:intergenic
GACTAAGAAAAGAAAGGATC+AGG	0.456770	3:-106406390	MsaT017164.1:CDS
GCTTCTTTGCCCTTGCAAGC+GGG	0.456904	3:-106405071	MsaT017164.1:CDS
GGAGGTATAGGAATAGGATA+TGG	0.457148	3:-106405269	MsaT017164.1:CDS
TGCTGGCTTATGATATTAGC+TGG	0.457220	3:+106404750	None:intergenic
GGCTTCTTTGCCCTTGCAAG+CGG	0.465152	3:-106405072	MsaT017164.1:CDS
CAAAACTTGGCCGTTGATCC+GGG	0.465888	3:+106405372	None:intergenic
GAAGATGAGGATAAAGAGAA+TGG	0.467439	3:-106406359	MsaT017164.1:CDS
AATTCACCTGAGTATATAAA+CGG	0.467724	3:-106404996	MsaT017164.1:CDS
GAGCTAGTTGTTGTCTGGCC+TGG	0.468240	3:+106404861	None:intergenic
AGCACTCCAACTAGTCTTAA+CGG	0.475574	3:-106405626	MsaT017164.1:CDS
GATTATTAGAAAACTTCTGC+TGG	0.476268	3:+106404733	None:intergenic
GCACTCCAACTAGTCTTAAC+GGG	0.477672	3:-106405625	MsaT017164.1:CDS
TCCAAAACCATGAGACAAGT+TGG	0.479542	3:+106408027	None:intergenic
AATTATCCCACTAGGTGAAA+AGG	0.479567	3:+106405658	None:intergenic
CGACGATCCAACTTGTCTCA+TGG	0.481091	3:-106408034	MsaT017164.1:CDS
CCAGCATGCTTCATTTGTAT+GGG	0.481160	3:+106404813	None:intergenic
TTTAGCTCCTCTAATCTCAC+AGG	0.481770	3:+106406557	None:intergenic
AGGATGGGAAGACCGTAATC+AGG	0.483908	3:-106404958	MsaT017164.1:CDS
TTTAAGCTGCTTGAACTTGT+GGG	0.484142	3:-106406815	MsaT017164.1:CDS
ACCAGGATACCCCGCTTGCA+AGG	0.485505	3:+106405061	None:intergenic
TGTTTGAGATACCGAGACTT+GGG	0.488772	3:+106405330	None:intergenic
TCCGGGAATTTATTTGGGAT+GGG	0.491640	3:+106405389	None:intergenic
CCATGCCCGTTAAGACTAGT+TGG	0.492442	3:+106405620	None:intergenic
CAGGGAATGCCAATGTCCAT+AGG	0.498172	3:-106405485	MsaT017164.1:CDS
CCCATACAAATGAAGCATGC+TGG	0.498373	3:-106404813	MsaT017164.1:CDS
GTTAATCAGAATATTCTTCA+GGG	0.498546	3:-106405503	MsaT017164.1:CDS
TCCGATGGGAAAACGGTCAC+CGG	0.502454	3:+106408077	None:intergenic
TCTTTCTCTATGCTGGATCA+AGG	0.503800	3:-106405206	MsaT017164.1:CDS
TTTGTTTGGATTCCAGATAA+CGG	0.510003	3:+106405152	None:intergenic
GTAATTTGCCATTTCAAGGA+TGG	0.513037	3:-106404974	MsaT017164.1:CDS
GAAGAAGAAGTCTGATCCAA+AGG	0.514805	3:-106406510	MsaT017164.1:CDS
GACAAAACTACTTCTGATAG+TGG	0.516959	3:-106406464	MsaT017164.1:CDS
GAACGTGGCAAGCCATCTCC+AGG	0.523004	3:-106405901	MsaT017164.1:intron
ATTTAAGCTGCTTGAACTTG+TGG	0.531591	3:-106406816	MsaT017164.1:CDS
ATACTTGGCGAGTTCAATGA+TGG	0.533419	3:-106404697	MsaT017164.1:CDS
CTAGTATGGTGGCAGCCTTA+GGG	0.534344	3:-106405745	MsaT017164.1:CDS
TGTTATTGCTTGACTAGTTG+TGG	0.534638	3:+106406916	None:intergenic
CTAGTTGTTGTCTGGCCTGG+TGG	0.535200	3:+106404864	None:intergenic
CTTCTTTGCCCTTGCAAGCG+GGG	0.537483	3:-106405070	MsaT017164.1:CDS
TAATTTGCCATTTCAAGGAT+GGG	0.541605	3:-106404973	MsaT017164.1:CDS
AAATTACCGTTTATATACTC+AGG	0.541639	3:+106404990	None:intergenic
GCCTCGGGTTGTTTGGTCTG+TGG	0.542268	3:-106406303	MsaT017164.1:CDS
GGCAGTGGACTAAGATCCGC+AGG	0.543371	3:-106406443	MsaT017164.1:CDS
TTGTTTGAGATACCGAGACT+TGG	0.548378	3:+106405329	None:intergenic
TAACGGGAGTTATGGCTGAC+TGG	0.548521	3:+106405522	None:intergenic
ACTACTTCTGATAGTGGCAG+TGG	0.549024	3:-106406458	MsaT017164.1:CDS
TGTGCACATCACTGATTACC+AGG	0.551505	3:+106406855	None:intergenic
CATCAGCTCAGAAGAAGCCT+CGG	0.554303	3:-106406319	MsaT017164.1:CDS
GGCGAGAACACGCATTCCGA+TGG	0.558372	3:+106408062	None:intergenic
CCAGGATACCCCGCTTGCAA+GGG	0.561131	3:+106405062	None:intergenic
CAAATAAATTCCCGGATCAA+CGG	0.562184	3:-106405382	MsaT017164.1:CDS
AGTCTCGGTATCTCAAACAA+TGG	0.562603	3:-106405326	MsaT017164.1:CDS
CAGATAATCACAGGCACCAT+GGG	0.562735	3:+106406586	None:intergenic
GGCGAGTTCAATGATGGGAC+AGG	0.562860	3:-106404691	MsaT017164.1:intron
CAATCTTATTTGAGAATGGG+TGG	0.565295	3:-106405713	MsaT017164.1:CDS
GAGGCTTCTTCTGAGCTGAT+GGG	0.565647	3:+106406321	None:intergenic
AAAGCTGACTAAGAAAAGAA+AGG	0.566687	3:-106406396	MsaT017164.1:CDS
AGGGAATGCCAATGTCCATA+GGG	0.567298	3:-106405484	MsaT017164.1:CDS
TTGCAAGTGATCAAACCCTA+TGG	0.568247	3:+106405469	None:intergenic
TCTCTATGCTGGATCAAGGT+AGG	0.568314	3:-106405202	MsaT017164.1:CDS
TGATCACTTGCAAAACAGCA+AGG	0.568375	3:-106405459	MsaT017164.1:CDS
AGATTGATCTGCACTCCCTA+AGG	0.568615	3:+106405730	None:intergenic
GACAACAACTAGCTCCACCT+TGG	0.570450	3:-106404853	MsaT017164.1:CDS
CTCAAACAATGGCTTGATGT+CGG	0.579465	3:-106405315	MsaT017164.1:CDS
TGTTCCTCCTTCAGATAACA+TGG	0.580834	3:-106405093	MsaT017164.1:CDS
ATCAGCTCAGAAGAAGCCTC+GGG	0.581453	3:-106406318	MsaT017164.1:CDS
TATGCGATAATTACTCCGAC+GGG	0.584211	3:-106404048	MsaT017164.1:CDS
AGATCCCCACTTACTTATGA+CGG	0.584541	3:+106406775	None:intergenic
CCAACTAGTCTTAACGGGCA+TGG	0.588692	3:-106405620	MsaT017164.1:CDS
GTTTGAGATACCGAGACTTG+GGG	0.591845	3:+106405331	None:intergenic
GCAGATAATCACAGGCACCA+TGG	0.592029	3:+106406585	None:intergenic
TGATCAAACCCTATGGACAT+TGG	0.593062	3:+106405476	None:intergenic
TGCATATGGTGATACAAAGC+TGG	0.593897	3:-106406624	MsaT017164.1:CDS
GATCCCCACTTACTTATGAC+GGG	0.593976	3:+106406776	None:intergenic
AGAAAATTCTGAATGTTGAG+AGG	0.594209	3:+106405226	None:intergenic
ATATGCGATAATTACTCCGA+CGG	0.598221	3:-106404049	MsaT017164.1:CDS
GTGCACATGCCTGACATGGA+TGG	0.600433	3:-106406839	MsaT017164.1:CDS
TACCACTCAAATGTTACTTG+CGG	0.600468	3:-106404927	MsaT017164.1:CDS
CCCAACTGAAGAAGCCCCGA+AGG	0.603189	3:+106405590	None:intergenic
AAAGAAGCCATGTTATCTGA+AGG	0.609057	3:+106405086	None:intergenic
AGGTTTCAGCAGATAATCAC+AGG	0.609824	3:+106406577	None:intergenic
GATCACTTGCAAAACAGCAA+GGG	0.610593	3:-106405458	MsaT017164.1:CDS
TGAGCTGCATTCAGTTAACT+CGG	0.614968	3:+106404785	None:intergenic
TGATGTGCACATGCCTGACA+TGG	0.615041	3:-106406843	MsaT017164.1:CDS
TCAGGATGAAGACGAAGATG+AGG	0.615403	3:-106406372	MsaT017164.1:CDS
ACAAGTTGGATCGTCGTCAA+CGG	0.615563	3:+106408041	None:intergenic
GCGAGAACACGCATTCCGAT+GGG	0.617268	3:+106408063	None:intergenic
GACCGTGGTATTGACATCTA+CGG	0.617438	3:+106407995	None:intergenic
ATCCGCAAGTAACATTTGAG+TGG	0.618668	3:+106404925	None:intergenic
ATATCTGGCAACGAACCACC+AGG	0.619562	3:+106405044	None:intergenic
TTGCCAGATATGCACTCCCA+AGG	0.620552	3:-106405032	MsaT017164.1:CDS
ATGCTGGATCAAGGTAGGCA+CGG	0.622381	3:-106405197	MsaT017164.1:CDS
GATAAGATGAAATTATTGGG+TGG	0.625103	3:-106404079	MsaT017164.1:CDS
CCCACTTACTTATGACGGGA+AGG	0.626480	3:+106406780	None:intergenic
AGATTACCAATTATCCCACT+AGG	0.628251	3:+106405650	None:intergenic
GAAGCCATGTTATCTGAAGG+AGG	0.632238	3:+106405089	None:intergenic
GATACAAAGCTGGTGATGAA+AGG	0.634012	3:-106406614	MsaT017164.1:CDS
AAATATCACAAGGGAGAACG+TGG	0.641409	3:-106405916	MsaT017164.1:CDS
TACTTGGCGAGTTCAATGAT+GGG	0.644216	3:-106404696	MsaT017164.1:CDS
TTGCAAGCGGGGTATCCTGG+TGG	0.644472	3:-106405059	MsaT017164.1:CDS
TAACAGCAGCAACAAACTTG+CGG	0.664827	3:+106406273	None:intergenic
TCCACAGACCAAACAACCCG+AGG	0.670707	3:+106406302	None:intergenic
AAACAAAGACAAGTTTGACC+TGG	0.671629	3:-106406873	MsaT017164.1:CDS
CTCCGTAGATGTCAATACCA+CGG	0.676022	3:-106407997	MsaT017164.1:intron
TTTGAGATACCGAGACTTGG+GGG	0.680383	3:+106405332	None:intergenic
TGAATGTCGAAAATATCACA+AGG	0.689686	3:-106405926	MsaT017164.1:CDS
GTGATGAAAGGAATTTCCCA+TGG	0.694201	3:-106406602	MsaT017164.1:CDS
ACGCACCCTGAAAGAAAACA+CGG	0.699020	3:-106405290	MsaT017164.1:CDS
AAACCAACAAGCTAGTATGG+TGG	0.708833	3:-106405756	MsaT017164.1:CDS
GAATGTCGAAAATATCACAA+GGG	0.725612	3:-106405925	MsaT017164.1:CDS
CTGTCACAAAGATACCCCGT+CGG	0.726754	3:+106404033	None:intergenic
ATGCGATAATTACTCCGACG+GGG	0.780483	3:-106404047	MsaT017164.1:CDS
AGAGAATGGTAATGACAACG+AGG	0.788270	3:-106406345	MsaT017164.1:CDS
CACCCTGAAAGAAAACACGG+AGG	0.809478	3:-106405287	MsaT017164.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	106404036	106408109	106404036	ID=MsaG017164
Chr3	mRNA	106404036	106408109	106404036	ID=MsaT017164.1;Parent=MsaG017164
Chr3	exon	106404036	106404107	106404036	ID=MsaT017164.1.exon6;Parent=MsaT017164.1
Chr3	CDS	106404036	106404107	106404036	ID=cds.MsaT017164.1;Parent=MsaT017164.1
Chr3	exon	106404692	106405816	106404692	ID=MsaT017164.1.exon5;Parent=MsaT017164.1
Chr3	CDS	106404692	106405816	106404692	ID=cds.MsaT017164.1;Parent=MsaT017164.1
Chr3	exon	106405902	106405978	106405902	ID=MsaT017164.1.exon4;Parent=MsaT017164.1
Chr3	CDS	106405902	106405978	106405902	ID=cds.MsaT017164.1;Parent=MsaT017164.1
Chr3	exon	106406255	106406653	106406255	ID=MsaT017164.1.exon3;Parent=MsaT017164.1
Chr3	CDS	106406255	106406653	106406255	ID=cds.MsaT017164.1;Parent=MsaT017164.1
Chr3	exon	106406789	106406941	106406789	ID=MsaT017164.1.exon2;Parent=MsaT017164.1
Chr3	CDS	106406789	106406941	106406789	ID=cds.MsaT017164.1;Parent=MsaT017164.1
Chr3	exon	106407998	106408109	106407998	ID=MsaT017164.1.exon1;Parent=MsaT017164.1
Chr3	CDS	106407998	106408109	106407998	ID=cds.MsaT017164.1;Parent=MsaT017164.1

Gene Sequence

>MsaT017164.1

ATGGATGATTCCGGTGACCGTTTTCCCATCGGAATGCGTGTTCTCGCCGTTGACGACGATCCAACTTGTCTCATGGTTTTGGAAACTCTTCTCCGTAGATGTCAATACCACGTAACCACAACTAGTCAAGCAATAACAGCGTTGACCATGTTGAGAGAAAACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCACATGCCTGACATGGATGGATTTAAGCTGCTTGAACTTGTGGGACTTGAAATGGACCTTCCCGTCATAATGTTGTCTGCATATGGTGATACAAAGCTGGTGATGAAAGGAATTTCCCATGGTGCCTGTGATTATCTGCTGAAACCTGTGAGATTAGAGGAGCTAAAGAACATTTGGCAGCATGTAATTAGGAAGAAGAAGTCTGATCCAAAGGAGAAAAACAAAACCAGTAAACCAGACAAAACTACTTCTGATAGTGGCAGTGGACTAAGATCCGCAGGAGCAGAAAATTCAGATGAAAATGGAAAGCTGACTAAGAAAAGAAAGGATCAGGATGAAGACGAAGATGAGGATAAAGAGAATGGTAATGACAACGAGGACCCATCAGCTCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTGCCCAAAAAAATTCTTGATATGATGAATGTCGAAAATATCACAAGGGAGAACGTGGCAAGCCATCTCCAGAAGTATAGACTTTATCTGAAAAGAATTAGCTGTGTTGCAAACCAACAAGCTAGTATGGTGGCAGCCTTAGGGAGTGCAGATCAATCTTATTTGAGAATGGGTGGTTCTGGACATTTTCACAATAATGCTTTCAGATCCTTTTCACCTAGTGGGATAATTGGTAATCTGAGCACTCCAACTAGTCTTAACGGGCATGGATTTTCTCCTTCGGGGCTTCTTCAGTTGGGCCAATCACGTAATTTAAACAATTCTTCCAATGATCAACTTAAATTCCAGTCAGCCATAACTCCCGTTAATCAGAATATTCTTCAGGGAATGCCAATGTCCATAGGGTTTGATCACTTGCAAAACAGCAAGGGTGTTATCTCTGTTCAAAACCTGAATACTGATGTGAAAACAACTTTTCCCATCCCAAATAAATTCCCGGATCAACGGCCAAGTTTTGCCACCTCTAGTTCTCATCCCCCAAGTCTCGGTATCTCAAACAATGGCTTGATGTCGGATACGCACCCTGAAAGAAAACACGGAGGTATAGGAATAGGATATGGAAGTTCATCTTCTTCAGTAGCCTCTCAACATTCAGAATTTTCTTTCTCTATGCTGGATCAAGGTAGGCACGGTGATAATTGGTCAAGCGACGTGCCGTTATCTGGAATCCAAACAAATTCTTTCTCTTCAAGTGAATGTTTTAGACAGACAGCTGTTCCTCCTTCAGATAACATGGCTTCTTTGCCCTTGCAAGCGGGGTATCCTGGTGGTTCGTTGCCAGATATGCACTCCCAAGGAATGATTTTTACTAATTCACCTGAGTATATAAACGGTAATTTGCCATTTCAAGGATGGGAAGACCGTAATCAGGATGCTACTTACCACTCAAATGTTACTTGCGGATCAATGAACTCTCTTGCTCCAGTTAACGGTGCCGTTTTTCCACCAGGCCAGACAACAACTAGCTCCACCTTGGATACTAAATTTTTTAATCCCATACAAATGAAGCATGCTGGATTTGCCGAGTTAACTGAATGCAGCTCATCAAGACAATCTCCAGCTAATATCATAAGCCAGCAGAAGTTTTCTAATAATCTTGGTTCACTGGAATACTTGGCGAGTTCAATGATGGGACAGGAGCAAGATAAGATGAAATTATTGGGTGGAGACTTCATATGCGATAATTACTCCGACGGGGTATCTTTGTGA

Protein sequence

>MsaT017164.1

MDDSGDRFPIGMRVLAVDDDPTCLMVLETLLRRCQYHVTTTSQAITALTMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKNIWQHVIRKKKSDPKEKNKTSKPDKTTSDSGSGLRSAGAENSDENGKLTKKRKDQDEDEDEDKENGNDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDMMNVENITRENVASHLQKYRLYLKRISCVANQQASMVAALGSADQSYLRMGGSGHFHNNAFRSFSPSGIIGNLSTPTSLNGHGFSPSGLLQLGQSRNLNNSSNDQLKFQSAITPVNQNILQGMPMSIGFDHLQNSKGVISVQNLNTDVKTTFPIPNKFPDQRPSFATSSSHPPSLGISNNGLMSDTHPERKHGGIGIGYGSSSSSVASQHSEFSFSMLDQGRHGDNWSSDVPLSGIQTNSFSSSECFRQTAVPPSDNMASLPLQAGYPGGSLPDMHSQGMIFTNSPEYINGNLPFQGWEDRNQDATYHSNVTCGSMNSLAPVNGAVFPPGQTTTSSTLDTKFFNPIQMKHAGFAELTECSSSRQSPANIISQQKFSNNLGSLEYLASSMMGQEQDKMKLLGGDFICDNYSDGVSL*