AlfalfaGEDB | MsaG017165

M. sativa ssp. caerulea / MsaG017165

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017165	XP_003603313.1	84.946	186	21	3	1	186	1	179	1.16e-102	305

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017165	sp\|Q39262\|ZFP3_ARATH	45.385	130	46	7	48	176	37	142	5.52e-22	92.0

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017165	tr\|G7J9W4\|G7J9W4_MEDTR	84.946	186	21	3	1	186	1	179	5.55e-103	305

TFs/TRs:

Gene ID	Type	Classification
MsaG017165	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000306	MsaG017165	0.830548	4.966685e-55	1.460039e-52
MsaG000359	MsaG017165	0.815610	1.466361e-51	2.878785e-49
MsaG001169	MsaG017165	0.807912	6.819919e-50	1.107529e-47
MsaG001724	MsaG017165	0.808508	5.097584e-50	8.397535e-48
MsaG002350	MsaG017165	0.805498	2.193728e-49	3.364391e-47
MsaG002604	MsaG017165	0.807795	7.217510e-50	1.168797e-47
MsaG003102	MsaG017165	0.803476	5.763074e-49	8.433929e-47
MsaG004101	MsaG017165	0.818069	4.141803e-52	8.660274e-50
MsaG004146	MsaG017165	0.813798	3.678376e-51	6.899323e-49
MsaG004648	MsaG017165	0.811325	1.270329e-50	2.240742e-48
MsaG004656	MsaG017165	0.818302	3.668663e-52	7.717183e-50
MsaG004913	MsaG017165	0.804791	3.078780e-49	4.645035e-47
MsaG005092	MsaG017165	0.807294	9.211591e-50	1.473876e-47
MsaG005880	MsaG017165	0.812425	7.336203e-51	1.329561e-48
MsaG006177	MsaG017165	0.831687	2.616028e-55	7.948903e-53
MsaG006837	MsaG017165	0.805790	1.906337e-49	2.943777e-47
MsaG006898	MsaG017165	0.809030	3.946078e-50	6.582965e-48
MsaG006886	MsaG017165	0.821564	6.638804e-53	1.521828e-50
MsaG007072	MsaG017165	0.800468	2.376438e-48	3.247256e-46
MsaG009060	MsaG017165	0.833297	1.048230e-55	3.338078e-53
MsaG009764	MsaG017165	0.808492	5.137567e-50	8.460221e-48
MsaG010328	MsaG017165	0.810428	1.981690e-50	3.419820e-48
MsaG010372	MsaG017165	0.824318	1.525115e-53	3.765852e-51
MsaG011285	MsaG017165	0.836858	1.339571e-56	4.744529e-54
MsaG011913	MsaG017165	0.809246	3.550500e-50	5.953616e-48
MsaG011952	MsaG017165	0.812530	6.958911e-51	1.264498e-48
MsaG012778	MsaG017165	0.802603	8.715257e-49	1.250065e-46
MsaG014950	MsaG017165	0.809855	2.630901e-50	4.477131e-48
MsaG015143	MsaG017165	0.812989	5.528961e-51	1.016190e-48
MsaG015446	MsaG017165	0.821186	8.108698e-53	1.840302e-50
MsaG015807	MsaG017165	0.819238	2.254099e-52	4.859065e-50
MsaG015809	MsaG017165	0.828341	1.697319e-54	4.686350e-52
MsaG015851	MsaG017165	0.808030	6.437960e-50	1.048462e-47
MsaG016163	MsaG017165	0.814863	2.145194e-51	4.132529e-49
MsaG016421	MsaG017165	0.815093	1.908486e-51	3.697834e-49
MsaG017105	MsaG017165	0.808630	4.802093e-50	7.934064e-48
MsaG017165	MsaG017183	0.801807	1.268593e-48	1.786788e-46
MsaG017165	MsaG017188	0.802494	9.176999e-49	1.312993e-46
MsaG017165	MsaG017690	0.809565	3.034089e-50	5.127432e-48
MsaG017165	MsaG017839	0.822661	3.705814e-53	8.748237e-51
MsaG017165	MsaG017907	0.809227	3.582598e-50	6.004718e-48
MsaG017165	MsaG019092	0.812407	7.402204e-51	1.340937e-48
MsaG017165	MsaG019132	0.835112	3.695841e-56	1.242124e-53
MsaG017165	MsaG020353	0.806533	1.331529e-49	2.092667e-47
MsaG017165	MsaG021516	0.808896	4.214496e-50	7.008174e-48
MsaG017165	MsaG023415	0.829964	6.890476e-55	1.992127e-52
MsaG017165	MsaG023570	0.801269	1.633354e-48	2.272535e-46
MsaG017165	MsaG023885	0.800360	2.499582e-48	3.407191e-46
MsaG017165	MsaG024293	0.807964	6.647719e-50	1.080897e-47
MsaG017165	MsaG025492	0.829408	9.391091e-55	2.672084e-52
MsaG017165	MsaG025732	0.811861	9.722939e-51	1.737764e-48
MsaG017165	MsaG026579	0.803953	4.593453e-49	6.796998e-47
MsaG017165	MsaG027159	0.800832	2.004447e-48	2.761521e-46
MsaG017165	MsaG028761	0.805297	2.415649e-49	3.687593e-47
MsaG017165	MsaG028935	0.814825	2.187163e-51	4.209382e-49
MsaG017165	MsaG029117	0.814836	2.174422e-51	4.186033e-49
MsaG017165	MsaG029694	0.814625	2.420086e-51	4.634146e-49
MsaG017165	MsaG031201	0.816660	8.566602e-52	1.727315e-49
MsaG017165	MsaG031652	0.805731	1.960541e-49	3.023350e-47
MsaG017165	MsaG032133	0.812497	7.076740e-51	1.284850e-48
MsaG017165	MsaG032228	0.825400	8.498527e-54	2.161388e-51
MsaG017165	MsaG033688	0.803221	6.504766e-49	9.463524e-47
MsaG017165	MsaG033700	0.832018	2.170211e-55	6.658015e-53
MsaG017165	MsaG033815	0.811286	1.294781e-50	2.281714e-48
MsaG017165	MsaG033922	0.805222	2.504121e-49	3.816036e-47
MsaG017165	MsaG034285	0.819308	2.173629e-52	4.694240e-50
MsaG017165	MsaG034673	0.808539	5.020318e-50	8.276606e-48
MsaG017165	MsaG035513	0.810340	2.070025e-50	3.564572e-48
MsaG017165	MsaG040381	0.811376	1.238435e-50	2.187188e-48
MsaG017165	MsaG040474	0.809384	3.317389e-50	5.581371e-48
MsaG017165	MsaG040517	0.819366	2.108775e-52	4.561198e-50
MsaG017165	MsaG041224	0.802462	9.319313e-49	1.332352e-46
MsaG017165	MsaG042791	0.803267	6.364348e-49	9.268971e-47
MsaG017165	MsaG044048	0.832292	1.857288e-55	5.743120e-53
MsaG017165	MsaG044623	0.821396	7.257823e-53	1.656299e-50
MsaG017165	MsaG044880	0.806689	1.234805e-49	1.947807e-47
MsaG017165	MsaG045060	0.823855	1.956701e-53	4.770795e-51
MsaG017165	MsaG045107	0.830038	6.608574e-55	1.914691e-52
MsaG017165	MsaG045200	0.809232	3.573689e-50	5.990538e-48
MsaG017165	MsaG045997	0.801661	1.358960e-48	1.907700e-46
MsaG017165	MsaG046105	0.806769	1.188345e-49	1.878004e-47
MsaG017165	MsaG046113	0.824464	1.409462e-53	3.494046e-51
MsaG017165	MsaG047073	0.807758	7.351249e-50	1.189363e-47
MsaG017165	MsaG004537	0.837590	8.717319e-57	3.157223e-54
MsaG017165	MsaG004304	0.815157	1.847566e-51	3.585610e-49
MsaG017165	MsaG008983	0.810352	2.057636e-50	3.544262e-48
MsaG017165	MsaG013007	0.816404	9.770557e-52	1.957222e-49
MsaG017165	MsaG013379	0.838857	4.127849e-57	1.554893e-54
MsaG017165	MsaG011352	0.811586	1.115185e-50	1.979707e-48
MsaG017165	MsaG013700	0.812723	6.317210e-51	1.153388e-48
MsaG017165	MsaG021945	0.802460	9.327753e-49	1.333510e-46
MsaG017165	MsaG032120	0.823020	3.059673e-53	7.293419e-51
MsaG017165	MsaG033077	0.811883	9.618109e-51	1.719954e-48
MsaG017165	MsaG030190	0.805562	2.127375e-49	3.267514e-47
MsaG017165	MsaG033058	0.802000	1.158439e-48	1.638768e-46
MsaG017165	MsaG037513	0.802815	7.886889e-49	1.136704e-46
MsaG017165	MsaG036287	0.807219	9.551732e-50	1.525592e-47
MsaG017165	MsaG035918	0.808874	4.259620e-50	7.079534e-48
MsaG017165	MsaG035299	0.800389	2.465942e-48	3.363543e-46
MsaG017165	MsaG045457	0.801234	1.660769e-48	2.308813e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017165	MtrunA17_Chr3g0137111	84.946	186	21	3	1	186	1	179	1.07e-106	305
MsaG017165	MtrunA17_Chr1g0149811	51.872	187	70	9	5	185	24	196	7.97e-48	156
MsaG017165	MtrunA17_Chr2g0333741	42.857	175	76	10	12	183	20	173	1.07e-26	101
MsaG017165	MtrunA17_Chr1g0161901	44.068	118	42	6	54	165	69	168	1.86e-19	82.8
MsaG017165	MtrunA17_Chr5g0434121	52.874	87	21	3	76	161	86	153	1.03e-18	80.5
MsaG017165	MtrunA17_Chr4g0001081	43.810	105	29	3	75	174	65	144	1.14e-18	80.1
MsaG017165	MtrunA17_Chr8g0376021	48.352	91	27	4	76	165	61	132	1.20e-18	80.1
MsaG017165	MtrunA17_Chr3g0110091	48.913	92	26	4	77	167	86	157	1.15e-17	77.8
MsaG017165	MtrunA17_Chr1g0207691	40.206	97	36	3	71	166	57	132	3.88e-15	70.1
MsaG017165	MtrunA17_Chr4g0072571	73.684	38	10	0	75	112	43	80	1.87e-14	67.8
MsaG017165	MtrunA17_Chr3g0081121	42.857	98	47	5	69	166	90	178	4.21e-14	68.9
MsaG017165	MtrunA17_Chr7g0250871	42.529	87	39	3	57	143	33	108	1.45e-11	60.1
MsaG017165	MtrunA17_Chr3g0079671	35.398	113	52	4	74	176	95	196	1.53e-11	61.6
MsaG017165	MtrunA17_Chr3g0081131	36.364	110	50	4	71	176	92	185	2.40e-11	61.2
MsaG017165	MtrunA17_Chr7g0222661	33.613	119	59	6	71	184	80	183	3.74e-11	60.5
MsaG017165	MtrunA17_Chr7g0254221	61.538	39	15	0	77	115	33	71	4.49e-11	58.5
MsaG017165	MtrunA17_Chr5g0396031	38.889	90	43	3	77	166	46	123	7.12e-11	60.1
MsaG017165	MtrunA17_Chr7g0251581	69.697	33	10	0	77	109	39	71	8.55e-11	58.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017165	AT5G25160.1	45.385	130	46	7	48	176	37	142	5.61e-23	92.0
MsaG017165	AT1G80730.1	40.876	137	72	4	37	166	20	154	1.52e-22	90.9
MsaG017165	AT5G10970.1	37.333	150	72	5	18	166	48	176	1.01e-20	87.0
MsaG017165	AT1G66140.1	46.739	92	37	3	77	161	83	169	2.28e-16	75.1
MsaG017165	AT1G24625.1	76.316	38	9	0	74	111	54	91	1.33e-15	72.0
MsaG017165	AT5G57520.1	65.909	44	15	0	75	118	48	91	6.39e-15	68.9
MsaG017165	AT5G14010.1	73.529	34	9	0	77	110	36	69	8.83e-13	63.5
MsaG017165	AT1G67030.1	44.944	89	44	3	44	132	7	90	2.20e-11	60.5
MsaG017165	AT3G58070.1	52.459	61	24	1	56	116	73	128	4.37e-11	60.5

Find 30 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATGAGACCATTTGCAATTA+AGG	0.217801	3:+106411192	MsaT017165.1:CDS
GGAATTGAAAGCAATTATTA+TGG	0.251312	3:+106411265	MsaT017165.1:CDS
TCACAACCGTTATGCAAATA+TGG	0.314680	3:+106411132	MsaT017165.1:CDS
CCTAACGATGATTGTGATCT+TGG	0.347148	3:+106410842	MsaT017165.1:CDS
ATTGCAGAATCCACATGAAT+TGG	0.369569	3:+106410751	MsaT017165.1:CDS
AGCAATTATTATGGATATCA+TGG	0.375634	3:+106411274	MsaT017165.1:CDS
AGAATTATCTATGTCTAAAC+AGG	0.387114	3:-106410891	None:intergenic
TTGGATGAAAATTTATGAAA+AGG	0.404264	3:-106411235	None:intergenic
GGAGAAACATAAAACCTTTG+AGG	0.452533	3:+106410772	MsaT017165.1:CDS
AACCTTTGAGGAAGAAGAAA+AGG	0.455284	3:+106410784	MsaT017165.1:CDS
AGAACGATGTTCTCAGCAAC+AGG	0.459446	3:+106411076	MsaT017165.1:CDS
TTCTTCAGTTCACAAGCACT+TGG	0.470251	3:+106411001	MsaT017165.1:CDS
CTAACGATGATTGTGATCTT+GGG	0.483992	3:+106410843	MsaT017165.1:CDS
GCTTTCAATTCCAAAGCCAT+TGG	0.496119	3:-106411254	None:intergenic
TCTTCAGTTCACAAGCACTT+GGG	0.508835	3:+106411002	MsaT017165.1:CDS
CTTCAGTTCACAAGCACTTG+GGG	0.514360	3:+106411003	MsaT017165.1:CDS
GAGTGTGCCTTAATTGCAAA+TGG	0.520506	3:-106411199	None:intergenic
TGCAATTAAGGCACACTCGA+TGG	0.523345	3:+106411204	MsaT017165.1:CDS
CCAAGATCACAATCATCGTT+AGG	0.527605	3:-106410842	None:intergenic
GGAAGAAGAAAAGGAGGCAA+AGG	0.531006	3:+106410793	MsaT017165.1:CDS
TTATGTTTCTCCAATTCATG+TGG	0.532950	3:-106410761	None:intergenic
ATGATATTTATGAAGAAATG+AGG	0.554191	3:-106411107	None:intergenic
GAGATGCCATATTTGCATAA+CGG	0.557005	3:-106411138	None:intergenic
TCATCAGAAAACTTCACTTG+TGG	0.611490	3:+106410923	MsaT017165.1:CDS
AAAATGCTCACAAGAGAGAG+AGG	0.643637	3:+106411032	MsaT017165.1:CDS
TTCAGTTCACAAGCACTTGG+GGG	0.644584	3:+106411004	MsaT017165.1:CDS
CTTTGAGGAAGAAGAAAAGG+AGG	0.655746	3:+106410787	MsaT017165.1:CDS
ATATTTATGAAGAAATGAGG+TGG	0.662714	3:-106411104	None:intergenic
TTACTATTAGCACAGAAGAG+TGG	0.684083	3:-106411166	None:intergenic
ACGATGTTCTCAGCAACAGG+AGG	0.689396	3:+106411079	MsaT017165.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	106410740	106411300	106410740	ID=MsaG017165
Chr3	mRNA	106410740	106411300	106410740	ID=MsaT017165.1;Parent=MsaG017165
Chr3	exon	106410740	106411300	106410740	ID=MsaT017165.1.exon1;Parent=MsaT017165.1
Chr3	CDS	106410740	106411300	106410740	ID=cds.MsaT017165.1;Parent=MsaT017165.1

Gene Sequence

>MsaT017165.1

ATGGAAATATCATTGCAGAATCCACATGAATTGGAGAAACATAAAACCTTTGAGGAAGAAGAAAAGGAGGCAAAGGTAGACACTTCATTTGATCTGAATGTTCCTAACGATGATTGTGATCTTGGGTGCAGTTTAAAGTCAAATTTAGTTACCTGTTTAGACATAGATAATTCTTCTAAAACATCATCAGAAAACTTCACTTGTGGCTCTGAATCAACTTCAGAGCCACGATTTTTCACTTGCAACTACTGCAAGAGAAAATTCTTCAGTTCACAAGCACTTGGGGGACATCAAAATGCTCACAAGAGAGAGAGGTCAATTGCAAAAAGAGGACGGAGAACGATGTTCTCAGCAACAGGAGGAACCACCTCATTTCTTCATAAATATCATCTTCACAACCGTTATGCAAATATGGCATCTCTACTACCACTCTTCTGTGCTAATAGTAATAGTATGAGACCATTTGCAATTAAGGCACACTCGATGGTTCAGAAGCCTTTTCATAAATTTTCATCCAATGGCTTTGGAATTGAAAGCAATTATTATGGATATCATGGATGA

Protein sequence

>MsaT017165.1

MEISLQNPHELEKHKTFEEEEKEAKVDTSFDLNVPNDDCDLGCSLKSNLVTCLDIDNSSKTSSENFTCGSESTSEPRFFTCNYCKRKFFSSQALGGHQNAHKRERSIAKRGRRTMFSATGGTTSFLHKYHLHNRYANMASLLPLFCANSNSMRPFAIKAHSMVQKPFHKFSSNGFGIESNYYGYHG*