AlfalfaGEDB | MsaG017170

M. sativa ssp. caerulea / MsaG017170

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017170	XP_024633705.1	97.627	295	7	0	5	299	67	361	0.0	599

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017170	sp\|Q0V7T5\|Y1864_ARATH	63.636	286	96	3	3	287	148	426	1.14e-125	368

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017170	tr\|A0A396IZN0\|A0A396IZN0_MEDTR	97.627	295	7	0	5	299	67	361	0.0	599

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG017170	0.838049	6.653278e-57	2.443824e-54
MsaG000179	MsaG017170	0.812942	5.660801e-51	1.039203e-48
MsaG000180	MsaG017170	0.867816	2.089311e-65	2.212029e-62
MsaG000207	MsaG017170	0.810060	2.377291e-50	4.065633e-48
MsaG000225	MsaG017170	0.809501	3.132154e-50	5.284942e-48
MsaG000309	MsaG017170	0.832826	1.371790e-55	4.308161e-53
MsaG000321	MsaG017170	0.800733	2.099483e-48	2.886055e-46
MsaG000327	MsaG017170	0.830948	3.968724e-55	1.180142e-52
MsaG000352	MsaG017170	0.801734	1.313395e-48	1.846773e-46
MsaG000405	MsaG017170	0.825132	9.827992e-54	2.481164e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017170	MtrunA17_Chr3g0137191	97.627	295	7	0	5	299	67	361	0.0	599
MsaG017170	MtrunA17_Chr1g0149711	84.354	294	45	1	5	297	90	383	0.0	505
MsaG017170	MtrunA17_Chr4g0005801	75.610	328	45	2	5	297	159	486	3.06e-173	488
MsaG017170	MtrunA17_Chr2g0333691	69.014	284	85	1	6	289	127	407	3.98e-145	414
MsaG017170	MtrunA17_Chr2g0320111	50.178	281	131	2	6	277	94	374	1.36e-88	270
MsaG017170	MtrunA17_Chr1g0191631	48.958	288	139	5	6	286	152	438	8.86e-85	261
MsaG017170	MtrunA17_Chr8g0342071	51.292	271	128	2	7	273	453	723	2.66e-81	262
MsaG017170	MtrunA17_Chr7g0237401	46.715	274	141	3	5	273	94	367	6.26e-79	246
MsaG017170	MtrunA17_Chr7g0262521	48.727	275	137	3	3	273	345	619	1.07e-78	253
MsaG017170	MtrunA17_Chr1g0183041	48.364	275	138	3	3	273	350	624	2.19e-77	250

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017170	AT2G25220.5	77.273	286	64	1	5	289	98	383	3.49e-159	449
MsaG017170	AT2G25220.1	77.273	286	64	1	5	289	147	432	3.72e-159	451
MsaG017170	AT2G25220.2	77.273	286	64	1	5	289	152	437	7.14e-159	450
MsaG017170	AT5G11020.3	72.632	285	78	0	5	289	81	365	2.50e-156	441
MsaG017170	AT5G11020.4	72.632	285	78	0	5	289	104	388	4.09e-156	441
MsaG017170	AT5G11020.2	72.632	285	78	0	5	289	108	392	5.18e-156	441
MsaG017170	AT5G11020.1	72.632	285	78	0	5	289	142	426	5.34e-156	442
MsaG017170	AT4G32000.1	75.352	284	69	1	5	287	130	413	1.97e-150	428
MsaG017170	AT4G32000.2	75.352	284	69	1	5	287	131	414	2.08e-150	428
MsaG017170	AT4G32000.3	75.352	284	69	1	5	287	173	456	1.80e-149	427

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Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTGTATGCCTA+CGG	0.586782	3:-106476281	MsaT017170.1:CDS
AAACCTTAATGTTCTTCTTT+TGG	0.231136	3:+106477800	None:intergenic
AAAGGACAATCTCATGGCTC+GGG	0.536530	3:-106478621	MsaT017170.1:intron
AAAGTGATGTGTATGCCTAC+GGG	0.524718	3:-106476280	MsaT017170.1:CDS
AAATGCGGAGACAGAATTTG+AGG	0.519947	3:-106478969	MsaT017170.1:intron
AAATTGCTCTTGACACAGCA+AGG	0.608923	3:-106478575	MsaT017170.1:intron
AACTGGAACAAGAGGGACGA+GGG	0.628367	3:+106475733	None:intergenic
AAGAAGAACATTAAGGTTTC+AGG	0.214220	3:-106477796	MsaT017170.1:CDS
AAGTGATGTGTATGCCTACG+GGG	0.736060	3:-106476279	MsaT017170.1:CDS
ACAAGGGATTGGCACTGAGC+TGG	0.570438	3:+106476206	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	106475670	106479276	106475670	ID=MsaG017170
Chr3	mRNA	106475670	106479276	106475670	ID=MsaT017170.1;Parent=MsaG017170
Chr3	exon	106475670	106475828	106475670	ID=MsaT017170.1.exon9;Parent=MsaT017170.1
Chr3	CDS	106475670	106475828	106475670	ID=cds.MsaT017170.1;Parent=MsaT017170.1
Chr3	exon	106476028	106476117	106476028	ID=MsaT017170.1.exon8;Parent=MsaT017170.1
Chr3	CDS	106476028	106476117	106476028	ID=cds.MsaT017170.1;Parent=MsaT017170.1
Chr3	exon	106476199	106476317	106476199	ID=MsaT017170.1.exon7;Parent=MsaT017170.1
Chr3	CDS	106476199	106476317	106476199	ID=cds.MsaT017170.1;Parent=MsaT017170.1
Chr3	exon	106477758	106477857	106477758	ID=MsaT017170.1.exon6;Parent=MsaT017170.1
Chr3	CDS	106477758	106477857	106477758	ID=cds.MsaT017170.1;Parent=MsaT017170.1
Chr3	exon	106477983	106478079	106477983	ID=MsaT017170.1.exon5;Parent=MsaT017170.1
Chr3	CDS	106477983	106478079	106477983	ID=cds.MsaT017170.1;Parent=MsaT017170.1
Chr3	exon	106478576	106478639	106478576	ID=MsaT017170.1.exon4;Parent=MsaT017170.1
Chr3	CDS	106478576	106478639	106478576	ID=cds.MsaT017170.1;Parent=MsaT017170.1
Chr3	exon	106478754	106478886	106478754	ID=MsaT017170.1.exon3;Parent=MsaT017170.1
Chr3	CDS	106478754	106478886	106478754	ID=cds.MsaT017170.1;Parent=MsaT017170.1
Chr3	exon	106478970	106479092	106478970	ID=MsaT017170.1.exon2;Parent=MsaT017170.1
Chr3	CDS	106478970	106479092	106478970	ID=cds.MsaT017170.1;Parent=MsaT017170.1
Chr3	exon	106479262	106479276	106479262	ID=MsaT017170.1.exon1;Parent=MsaT017170.1
Chr3	CDS	106479262	106479276	106479262	ID=cds.MsaT017170.1;Parent=MsaT017170.1

Gene Sequence

>MsaT017170.1

ATGTTCAAAACTCAGGAAAGTAACATCTTGGGTATAGGTGGTTTTGGATGTGTTTACAAGGCACAATTTGATGATAATTTGGATGTTGCTGTCAAGAAACTACACTGCCAAACACAAAATGCGGAGACAGAATTTGAGAATGAGGTGGATTTATTGAGTAAAATTGAGCATCCAAATATAATTTCTTTACTCGGTTGTAGCATTAATGGAGACATGAGATTTATTGTGTATGAGTTAATGCAAAATGGATCCTTGGAAGCTCTATTACATGGACAATCTCATGGCTCGGGATTGACTTGGCATATGAGAATGAAAATTGCTCTTGACACAGCAAGAGGATTAGAATACCTACATGAGCATTGTTACCCTCGGGTGATTCATAGAGATATGAAATCTTCAAATATTCTTTTAGATGCAAACTTCAATGCCAAGCTCTCTGACTTTGGTCTGTCCATAATTGATGGGTCCCAAAAGAAGAACATTAAGGTTTCAGGAACACTAGGATACGTAGCCCCAGAATATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTGTATGCCTACGGGGTTGTACTCCTGGAGCTCCTGTTTGGAAGGAAGCCTGTAGAAAAACTGGCACCAGCTCAGTGCCAATCCCTTGTCACATGGGCCATGCCTCAGCTCACAGACAGGTCCAAACTTCCAAACATTGTGGATCCAATCATAAAGAATACAATGGATCTCAAGCATTTATACCAGGTTGCTGCGGTGGCGGTACTATGTGTGCAACCAGAGCCAAGTTACCGCCCACTAATCACAGATGTTCTTCACTCCCTCGTCCCTCTTGTTCCAGTTGAGCTTGGAGGAACACTCAGAGTGACACAATATCAAACCGATCCATCTATGAGTTTGAGCTAG

Protein sequence

>MsaT017170.1

MFKTQESNILGIGGFGCVYKAQFDDNLDVAVKKLHCQTQNAETEFENEVDLLSKIEHPNIISLLGCSINGDMRFIVYELMQNGSLEALLHGQSHGSGLTWHMRMKIALDTARGLEYLHEHCYPRVIHRDMKSSNILLDANFNAKLSDFGLSIIDGSQKKNIKVSGTLGYVAPEYLLDGKLTDKSDVYAYGVVLLELLFGRKPVEKLAPAQCQSLVTWAMPQLTDRSKLPNIVDPIIKNTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLVPLVPVELGGTLRVTQYQTDPSMSLS*