AlfalfaGEDB | MsaG017228

M. sativa ssp. caerulea / MsaG017228

KEGG: -
GO: GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009787 GO:0009867 GO:0009889 GO:0009966 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0032870 GO:0032879 GO:0033993 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140110 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:2000022 GO:2000071 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017228	XP_003603420.1	92.470	332	17	2	1	326	1	330	0.0	567

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017228	sp\|Q8H0V5\|OCP3_ARATH	48.659	261	127	1	66	319	91	351	7.38e-67	216

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017228	tr\|G7JB43\|G7JB43_MEDTR	92.470	332	17	2	1	326	1	330	0.0	567

TFs/TRs:

Gene ID	Type	Classification
MsaG017228	TF	HB-other

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017228	MtrunA17_Chr3g0137971	92.470	332	17	2	1	326	1	330	0.0	567

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017228	AT5G11270.1	48.659	261	127	1	66	319	91	351	7.51e-68	216

Find 53 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAATCTCCGGGCGTAGTTTC+AGG	0.263805	3:+107072660	None:intergenic
GGTGATACTGCTGATGGTTT+AGG	0.275225	3:+107072681	None:intergenic
TTCTCGAAAGAGATTGAAAA+AGG	0.338696	3:-107072544	MsaT017228.1:CDS
GATCATGCTCATGCAGAATC+TGG	0.343580	3:-107072615	MsaT017228.1:CDS
TTCCTCTGACTGTGACTAAA+CGG	0.395790	3:+107074227	None:intergenic
TTCGCTGCAAAGAAGAGGAT+TGG	0.420945	3:+107074203	None:intergenic
GCTGATGGTTTAGGTTCATC+AGG	0.425177	3:+107072690	None:intergenic
TTCATGACATGCAACAGAAT+TGG	0.427701	3:-107072569	MsaT017228.1:CDS
CGCGGAGAACAGTTATTAAG+TGG	0.452000	3:-107071215	MsaT017228.1:CDS
TCGCTGCAAAGAAGAGGATT+GGG	0.456309	3:+107074204	None:intergenic
TTCTGTTGCATGTCATGAAT+AGG	0.457484	3:+107072573	None:intergenic
TTGGCTAGAGCATTGAAAAC+TGG	0.460688	3:-107073650	MsaT017228.1:CDS
ATAGGTAAGTTAGACTTCTT+CGG	0.466152	3:+107072591	None:intergenic
TCCTCTGACTGTGACTAAAC+GGG	0.466238	3:+107074228	None:intergenic
CGTGAGTTGGAAGGTGTGTT+GGG	0.479759	3:-107073797	MsaT017228.1:CDS
TGTTTGAAAAGCAACTCAAA+TGG	0.492775	3:+107073920	None:intergenic
ATTCGCTGAAGCTTAGAACT+TGG	0.492933	3:-107073685	MsaT017228.1:CDS
TCGTTAGCAGACTGCTGGTA+AGG	0.494872	3:+107071147	None:intergenic
TTGTTTCGTTAGCAGACTGC+TGG	0.504326	3:+107071142	None:intergenic
AAAGGCTTACACTTAGTTTG+CGG	0.505407	3:+107073624	None:intergenic
TGCTTTGTTAGAACGTGAGT+TGG	0.513640	3:-107073810	MsaT017228.1:CDS
CTCAGCATCAGAAGACTTGG+TGG	0.517452	3:+107072723	None:intergenic
AGCTCTATCAAGACAGAGCT+CGG	0.525713	3:+107072773	None:intergenic
AGAGCGAGAAGGAAGAGTGA+AGG	0.528288	3:+107074165	None:intergenic
ACGTGAGTTGGAAGGTGTGT+TGG	0.531369	3:-107073798	MsaT017228.1:CDS
AGAGTGAAGGAGAAGAGAAG+AGG	0.540225	3:+107074178	None:intergenic
AGACAAACGTGCCGAGGAGG+GGG	0.542683	3:-107071187	MsaT017228.1:CDS
GTTTCAGGTGATACTGCTGA+TGG	0.555775	3:+107072675	None:intergenic
AGGCTCAGCATCAGAAGACT+TGG	0.557597	3:+107072720	None:intergenic
CGGTGACAATTGAAGAGTAG+AGG	0.560168	3:+107074137	None:intergenic
TGGTAAGGAAGACGATGCTC+TGG	0.560826	3:+107071162	None:intergenic
AAATTGACTCATGTTACAGA+GGG	0.567201	3:-107073959	MsaT017228.1:CDS
AACTTGGCAATTGAATACAT+TGG	0.575518	3:-107073669	MsaT017228.1:CDS
AGCATCAGAAGACTTGGTGG+AGG	0.576518	3:+107072726	None:intergenic
TAGGTTCATCAGGAATCGAT+AGG	0.584575	3:+107072700	None:intergenic
GTATCACCTGAAACTACGCC+CGG	0.589871	3:-107072666	MsaT017228.1:CDS
GAAGACAAACGTGCCGAGGA+GGG	0.595141	3:-107071189	MsaT017228.1:CDS
AAAGGCTCAACTTGACACGC+TGG	0.611700	3:-107072526	MsaT017228.1:CDS
TTGTTAGAACGTGAGTTGGA+AGG	0.619119	3:-107073806	MsaT017228.1:CDS
TGAAGACAAACGTGCCGAGG+AGG	0.619168	3:-107071190	MsaT017228.1:CDS
AAGACAAACGTGCCGAGGAG+GGG	0.620622	3:-107071188	MsaT017228.1:CDS
TGCATGTTTCAAACATTCCG+CGG	0.630435	3:-107071233	MsaT017228.1:CDS
ACCCGTTTAGTCACAGTCAG+AGG	0.634786	3:-107074229	MsaT017228.1:CDS
AAAATTGACTCATGTTACAG+AGG	0.638213	3:-107073960	MsaT017228.1:CDS
GCATCAGAAGACTTGGTGGA+GGG	0.649310	3:+107072727	None:intergenic
GTTTGAAGACAAACGTGCCG+AGG	0.651860	3:-107071193	MsaT017228.1:CDS
TGATAAACACTGATTCGCGA+CGG	0.673675	3:+107074255	None:intergenic
TGTTACAGAGGGGAATGACG+AGG	0.686418	3:-107073948	MsaT017228.1:CDS
TACAGAGGGGAATGACGAGG+AGG	0.700089	3:-107073945	MsaT017228.1:CDS
ACAGATATTAGCGAAACACA+AGG	0.710555	3:-107073749	MsaT017228.1:CDS
CACTTAATAACTGTTCTCCG+CGG	0.713242	3:+107071216	None:intergenic
GAGTTTACATGAGATCAAAG+CGG	0.731573	3:-107072500	MsaT017228.1:CDS
AATTGACTCATGTTACAGAG+GGG	0.739510	3:-107073958	MsaT017228.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	107071137	107074281	107071137	ID=MsaG017228
Chr3	mRNA	107071137	107074281	107071137	ID=MsaT017228.1;Parent=MsaG017228
Chr3	exon	107071137	107071277	107071137	ID=MsaT017228.1.exon4;Parent=MsaT017228.1
Chr3	CDS	107071137	107071277	107071137	ID=cds.MsaT017228.1;Parent=MsaT017228.1
Chr3	exon	107072494	107072811	107072494	ID=MsaT017228.1.exon3;Parent=MsaT017228.1
Chr3	CDS	107072494	107072811	107072494	ID=cds.MsaT017228.1;Parent=MsaT017228.1
Chr3	exon	107073634	107073984	107073634	ID=MsaT017228.1.exon2;Parent=MsaT017228.1
Chr3	CDS	107073634	107073984	107073634	ID=cds.MsaT017228.1;Parent=MsaT017228.1
Chr3	exon	107074111	107074281	107074111	ID=MsaT017228.1.exon1;Parent=MsaT017228.1
Chr3	CDS	107074111	107074281	107074111	ID=cds.MsaT017228.1;Parent=MsaT017228.1

Gene Sequence

>MsaT017228.1

ATGGCCGTCGCGAATCAGTGTTTATCATATACCCGTTTAGTCACAGTCAGAGGAACCCAATCCTCTTCTTTGCAGCGAAAACCTCTTCTCTTCTCCTTCACTCTTCCTTCTCGCTCTCAAAACCTCTACTCTTCAATTGTCACCGCCTCTTCCAAAAAGAAAAACAATAAGAAAAAATTGACTCATGTTACAGAGGGGAATGACGAGGAGGATCCATTTGAGTTGCTTTTCAAACAACTCGAAGAAGATCTCAAAAACGATGATGATTTGTCAAAAGAAGATAGCGATGACGACGACGACGACGAGATAAGTGACGAAGATTTTGCTTTGTTAGAACGTGAGTTGGAAGGTGTGTTGGGTGAATTTGATGCTGAATTGTTGAACACAGATATTAGCGAAACACAAGGTGATAATGATGTAGAAAAAAGTAGTGGCGATGGAAATGATAATTCGCTGAAGCTTAGAACTTGGCAATTGAATACATTGGCTAGAGCATTGAAAACTGGACGCCGCAAACTAAGTATAAAAGCTCTTGCTGCCGAGCTCTGTCTTGATAGAGCTCTTGTTCTTGATTTGCTTCGTAACCCTCCACCAAGTCTTCTGATGCTGAGCCTATCGATTCCTGATGAACCTAAACCATCAGCAGTATCACCTGAAACTACGCCCGGAGATTCTTTTTATAAAGAAACAAGTGCAGATCATGCTCATGCAGAATCTGGACCGAAGAAGTCTAACTTACCTATTCATGACATGCAACAGAATTGGTCTTCTCGAAAGAGATTGAAAAAGGCTCAACTTGACACGCTGGAGAGAGTTTACATGAGATCAAAGCGGCCCACTAATGCAATGATTAGTAATATTGTGCATGTTTCAAACATTCCGCGGAGAACAGTTATTAAGTGGTTTGAAGACAAACGTGCCGAGGAGGGGGTTCCAGAGCATCGTCTTCCTTACCAGCAGTCTGCTAACGAAACAAGTTGA

Protein sequence

>MsaT017228.1

MAVANQCLSYTRLVTVRGTQSSSLQRKPLLFSFTLPSRSQNLYSSIVTASSKKKNNKKKLTHVTEGNDEEDPFELLFKQLEEDLKNDDDLSKEDSDDDDDDEISDEDFALLERELEGVLGEFDAELLNTDISETQGDNDVEKSSGDGNDNSLKLRTWQLNTLARALKTGRRKLSIKALAAELCLDRALVLDLLRNPPPSLLMLSLSIPDEPKPSAVSPETTPGDSFYKETSADHAHAESGPKKSNLPIHDMQQNWSSRKRLKKAQLDTLERVYMRSKRPTNAMISNIVHVSNIPRRTVIKWFEDKRAEEGVPEHRLPYQQSANETS*