AlfalfaGEDB | MsaG017255

M. sativa ssp. caerulea / MsaG017255

KEGG: -
GO: GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
PFAM: PF08513.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017255	XP_003603460.2	98.234	906	4	4	1	903	1	897	0.0	1816

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017255	sp\|Q9FUY2\|LEUNG_ARATH	72.955	758	178	7	161	903	186	931	0.0	1068

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017255	tr\|G7JBP5\|G7JBP5_MEDTR	98.234	906	4	4	1	903	1	897	0.0	1816

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TFs/TRs:

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Gene ID	Type	Classification
MsaG017255	TR	LUG

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000327	MsaG017255	0.821932	5.463527e-53	1.264687e-50
MsaG000380	MsaG017255	0.806274	1.509617e-49	2.358058e-47
MsaG002563	MsaG017255	0.807831	7.093621e-50	1.149710e-47
MsaG004201	MsaG017255	0.812261	7.963153e-51	1.437264e-48
MsaG006338	MsaG017255	0.836749	1.427430e-56	5.039074e-54
MsaG006387	MsaG017255	0.820653	1.074040e-52	2.403279e-50
MsaG006431	MsaG017255	0.804144	4.193918e-49	6.233364e-47
MsaG007767	MsaG017255	0.806507	1.348394e-49	2.117874e-47
MsaG008069	MsaG017255	0.806620	1.277045e-49	2.011151e-47
MsaG008246	MsaG017255	0.804768	3.113737e-49	4.695190e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017255	MtrunA17_Chr3g0138311	98.234	906	4	4	1	903	1	897	0.0	1816
MsaG017255	MtrunA17_Chr1g0148791	84.021	751	99	8	161	903	165	902	0.0	1200
MsaG017255	MtrunA17_Chr1g0171711	57.277	426	163	6	488	903	370	786	5.20e-163	495
MsaG017255	MtrunA17_Chr1g0171711	42.982	342	110	15	1	325	1	274	6.11e-53	198
MsaG017255	MtrunA17_Chr7g0237271	51.773	423	180	8	491	903	376	784	1.39e-138	432
MsaG017255	MtrunA17_Chr7g0237271	44.444	342	99	11	2	323	8	278	6.28e-59	216
MsaG017255	MtrunA17_Chr4g0062881	48.592	426	177	10	483	903	69	457	5.07e-121	375
MsaG017255	MtrunA17_Chr2g0282401	48.955	335	156	4	582	903	456	788	1.80e-99	328
MsaG017255	MtrunA17_Chr4g0047051	41.606	274	156	3	633	903	36	308	9.31e-64	217
MsaG017255	MtrunA17_Chr4g0047071	40.989	283	152	7	633	903	3	282	3.85e-61	209

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017255	AT4G32551.1	72.955	758	178	7	161	903	186	931	0.0	1068
MsaG017255	AT2G32700.2	55.399	426	170	8	488	903	372	787	3.82e-156	478
MsaG017255	AT2G32700.2	42.690	342	110	13	1	324	1	274	5.42e-49	187
MsaG017255	AT2G32700.5	55.399	426	170	8	488	903	372	787	3.82e-156	478
MsaG017255	AT2G32700.5	42.690	342	110	13	1	324	1	274	5.42e-49	187
MsaG017255	AT2G32700.1	55.399	426	170	8	488	903	372	787	3.82e-156	478
MsaG017255	AT2G32700.1	42.690	342	110	13	1	324	1	274	5.42e-49	187
MsaG017255	AT2G32700.4	55.399	426	170	8	488	903	372	787	3.82e-156	478
MsaG017255	AT2G32700.4	42.690	342	110	13	1	324	1	274	5.42e-49	187
MsaG017255	AT2G32700.3	55.399	426	170	8	488	903	372	787	3.82e-156	478

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Find 209 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAACCGGTATCTTCTT+CGG	0.398253	3:+107329135	MsaT017255.1:CDS
AAAGTATCATCTGACCCTGT+TGG	0.567966	3:+107325734	MsaT017255.1:CDS
AAAGTGCGAAGAGAATACCC+AGG	0.782358	3:-107331352	None:intergenic
AAATGATCACGTACTGTGAG+TGG	0.589381	3:-107327589	None:intergenic
AAATGGGTTAGCTGGAAACC+CGG	0.578315	3:+107326662	MsaT017255.1:CDS
AACAACAATTTGACTTTGAA+AGG	0.413556	3:+107327562	MsaT017255.1:CDS
AACAACAGCAAAATAGAGAT+AGG	0.415075	3:+107326616	MsaT017255.1:CDS
AACATTTGTAGTTGATGAAA+TGG	0.443923	3:-107327788	None:intergenic
AACCAATGACGAGCAGTGAA+GGG	0.566783	3:-107332091	None:intergenic
AACCATGTCTCAAACTAACT+GGG	0.603782	3:+107325320	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	107325324	107332382	107325324	ID=MsaG017255
Chr3	mRNA	107325324	107332382	107325324	ID=MsaT017255.1;Parent=MsaG017255
Chr3	exon	107325324	107325376	107325324	ID=MsaT017255.1.exon1;Parent=MsaT017255.1
Chr3	CDS	107325324	107325376	107325324	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107325658	107325755	107325658	ID=MsaT017255.1.exon2;Parent=MsaT017255.1
Chr3	CDS	107325658	107325755	107325658	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107325893	107326002	107325893	ID=MsaT017255.1.exon3;Parent=MsaT017255.1
Chr3	CDS	107325893	107326002	107325893	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107326411	107326773	107326411	ID=MsaT017255.1.exon4;Parent=MsaT017255.1
Chr3	CDS	107326411	107326773	107326411	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107326862	107326950	107326862	ID=MsaT017255.1.exon5;Parent=MsaT017255.1
Chr3	CDS	107326862	107326950	107326862	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107327197	107327275	107327197	ID=MsaT017255.1.exon6;Parent=MsaT017255.1
Chr3	CDS	107327197	107327275	107327197	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107327359	107327434	107327359	ID=MsaT017255.1.exon7;Parent=MsaT017255.1
Chr3	CDS	107327359	107327434	107327359	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107327548	107327597	107327548	ID=MsaT017255.1.exon8;Parent=MsaT017255.1
Chr3	CDS	107327548	107327597	107327548	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107327725	107328036	107327725	ID=MsaT017255.1.exon9;Parent=MsaT017255.1
Chr3	CDS	107327725	107328036	107327725	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107328184	107328402	107328184	ID=MsaT017255.1.exon10;Parent=MsaT017255.1
Chr3	CDS	107328184	107328402	107328184	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107329106	107329351	107329106	ID=MsaT017255.1.exon11;Parent=MsaT017255.1
Chr3	CDS	107329106	107329351	107329106	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107329438	107329582	107329438	ID=MsaT017255.1.exon12;Parent=MsaT017255.1
Chr3	CDS	107329438	107329582	107329438	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107330194	107330303	107330194	ID=MsaT017255.1.exon13;Parent=MsaT017255.1
Chr3	CDS	107330194	107330303	107330194	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107330477	107330626	107330477	ID=MsaT017255.1.exon14;Parent=MsaT017255.1
Chr3	CDS	107330477	107330626	107330477	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107331352	107331507	107331352	ID=MsaT017255.1.exon15;Parent=MsaT017255.1
Chr3	CDS	107331352	107331507	107331352	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107331656	107331772	107331656	ID=MsaT017255.1.exon16;Parent=MsaT017255.1
Chr3	CDS	107331656	107331772	107331656	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107331927	107332121	107331927	ID=MsaT017255.1.exon17;Parent=MsaT017255.1
Chr3	CDS	107331927	107332121	107331927	ID=cds.MsaT017255.1;Parent=MsaT017255.1
Chr3	exon	107332239	107332382	107332239	ID=MsaT017255.1.exon18;Parent=MsaT017255.1
Chr3	CDS	107332239	107332382	107332239	ID=cds.MsaT017255.1;Parent=MsaT017255.1

Gene Sequence

>MsaT017255.1

ATGTCTCAAACTAACTGGGAAGCTGATAAGATGCAAGTTTCAACCTTTACTTTGTTAGATGTTTACATCCATGATTACCTTGTTAAGAGGGATTTGAAAGCTTCTGCTCAAGCTTTTCAAGCTGAGGGAAAAGTATCATCTGACCCTGTTGCTATTGATGCTCCTGGAGGTTTTCTGTTTGAGTGGTGGTCGGTTTTCTGGGATATTTTCATTGCAAGGACCAATGAGAAGCACTCGGAGGTGGCTGCATCATATATAGAGACTCAATTAATCAAGGCAAGGGAACAACAGCAACAGCAACAACAACAGCAGCAGCCTCAACCTCAGCAGTCACAGCATGCGCAGCAGCAGCAACACATGCAGATGCAACAACTTCTGATGCAGAGACATGCACAGCAGCAGCAACAACAGCAGCAGCATCAGCAACAGCCACAATCGCAGCCGCAGCAGCCACAACCACAACCACAACAACAGCAAAATAGAGATAGGGCTCATCTCTTAAATGGCAGCGCAAATGGGTTAGCTGGAAACCCGGCAACTGCTAATGCAATAGCAACAAAGATGTATGAGGAAAGGTTAAAAGGTCCCCCACAGAGGGATTCTTTGGATGACGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAGCTCTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGCAGCTGGTGGTCAGCCTTCAGGGCAAGTTTTGCATGGCACTGCTGGTGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAACTACCAGGGTCTACACCGGACATAAAGAGTGAGATAAATCCGGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCATTGTTAGGAATTTCTGGATCAAATCAAGGGAACAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGTTTGGAGCAACTTCGCTCTGGTTTACTTCAGCAGCAAAAGCCTTATATGCAGGCTCCTCAGCCATTTCATCAACTACAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTTGCACAACAGAGTTTGTCATCACCATCTGCCAGTGAAGAAAGTAGAAGGCTGAGAATGCTTCTGAATAATAGGAATATTGGCCTAAATAAGGATGGCCTTTCAAACCCTGGGGGTGACATGTTATCGAATGTTGGATCACCTCTTCATGGCGGTGGCCCTCCTTTTCCCCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAGCAACAACAGCAGCAACATCAACAACAGTCGAGCATCAATGCACAACAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAATCATAGCATGCACCAGCAAGATAAGGTAGGGGGAGGTGGTGGTAGTGTCACCATGGATGGCAGCATGTCAAACTCATATCGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGAAGAAAGAGAAAGCAACCGGTATCTTCTTCGGGTCCTGCAAATAGTTCAGGAACGGCAAATACGGCAGGCCCATCACCAAGTTCAGCCCCCTCAACTCCCTCAACTCATACTCCTGGAGATGCTGTTTCAATGCCTGCTTTGCCTCATAATAGTAGTTCTTCAAAGCCTCTAATGATGTTTAGCACTGATGGTACTGGAACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGAAGGCTGATGTGGATCGCTTTGTGGACGATGGGTCTTTAGATGATAATGTAGAGTCTTTTTTATCGCAAGATGATACGGATCCTAGAGATCCTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGTGCAAGCTCAAGCAAAATTGCCTGTTGCCATTTCTCATCTGATGGAAAATTACTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTATATGGTATGCGGATTCACTAAAACAAAAAGCTATTCTTGAAGAGCACTCATCTTTGATAACTGATGTCCGTTTCAGTGCAAGCATGCCACGTCTAGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCTCTTCGCACTTTTACGGGACATTCTACATCTGTCATGTCACTAGATTTTCACCCAAATAAAGATGATCTTATATGTTCGTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAACGGCAGTTGTGTTAGAGTCTCTAAGGGTGGCACTACCCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCAGCTGAAAACATCGTGTCTATACTTGATGTGGAAACACAGGCATGCCGATATTCATTAAAGGGTCACACAAAGACAATAGATTCTGTATGTTGGGATCCATCGGGAGAATTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGATTTGGACTCTTGAAGGGGAATGTGTTCATGAGCTTAGCTGTAATGGAAGTAAGTTTCACTCATGTGTTTTCCATCCAACATTCCCTTCACTGCTCGTCATTGGTTGTTACCAGTCATTGGAGCTGTGGAACATGGCTGAGAACAAGACAATGACTTTGTCTGCTCATGATGGTTTAATTACTGCCTTGGCGGTTTCAACTGTAAATGGTTTAGTTGCTTCTGCCAGTCACGACAAGTTCATCAAGCTTTGGAAGTAA

Protein sequence

>MsaT017255.1

MSQTNWEADKMQVSTFTLLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQPQPQQSQHAQQQQHMQMQQLLMQRHAQQQQQQQQHQQQPQSQPQQPQPQPQQQQNRDRAHLLNGSANGLAGNPATANAIATKMYEERLKGPPQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAGGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLMLAQQSLSSPSASEESRRLRMLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALPHNSSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSSLITDVRFSASMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRIWTLEGECVHELSCNGSKFHSCVFHPTFPSLLVIGCYQSLELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWK*