AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG017261


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG017261 MtrunA17_Chr3g0138411 95.771 1206 44 1 1 1199 1 1206 0.0 2407
MsaG017261 MtrunA17_Chr3g0133461 67.028 1107 265 17 181 1199 249 1343 0.0 1436
MsaG017261 MtrunA17_Chr3g0133461 38.889 432 192 10 69 454 16 421 5.59e-61 229
MsaG017261 MtrunA17_Chr5g0438991 66.024 986 209 12 233 1183 64 958 0.0 1273
MsaG017261 MtrunA17_Chr6g0456861 70.552 815 173 10 381 1192 22 772 0.0 1166
MsaG017261 MtrunA17_Chr4g0000031 48.039 816 391 10 396 1191 893 1695 0.0 787
MsaG017261 MtrunA17_Chr6g0456851 48.472 916 364 22 15 906 2 833 0.0 773
MsaG017261 MtrunA17_Chr6g0456851 62.667 75 28 0 948 1022 807 881 1.35e-20 98.6
MsaG017261 MtrunA17_Chr6g0456931 72.385 239 66 0 615 853 1 239 8.91e-124 381
MsaG017261 MtrunA17_Chr5g0401991 58.781 279 53 6 844 1118 1 221 5.32e-91 291
MsaG017261 MtrunA17_Chr5g0402001 91.089 101 9 0 693 793 1 101 4.93e-59 197
MsaG017261 MtrunA17_Chr1g0169961 68.696 115 35 1 388 502 55 168 4.98e-46 163
MsaG017261 MtrunA17_Chr5g0439001 68.687 99 26 2 795 893 1 94 1.07e-36 134
MsaG017261 MtrunA17_Chr6g0456921 49.057 159 21 6 693 849 1 101 6.56e-32 127
MsaG017261 MtrunA17_Chr6g0456911 78.182 55 12 0 960 1014 6 60 3.93e-23 94.4
MsaG017261 MtrunA17_Chr0c02g0489811 77.193 57 13 0 958 1014 5 61 8.22e-23 93.6
MsaG017261 MtrunA17_Chr7g0229221 73.684 57 15 0 958 1014 5 61 1.78e-21 89.7
MsaG017261 MtrunA17_Chr0c02g0489721 78.723 47 10 0 888 934 1 47 8.50e-21 86.7
MsaG017261 MtrunA17_Chr7g0229231 78.723 47 10 0 888 934 1 47 8.50e-21 86.7
MsaG017261 MtrunA17_Chr0c02g0489731 70.175 57 17 0 958 1014 5 61 5.32e-20 85.5
MsaG017261 MtrunA17_Chr0c02g0489821 80.000 45 9 0 890 934 1 45 6.98e-20 84.0
MsaG017261 MtrunA17_Chr6g0456781 50.704 71 27 2 474 544 25 87 1.33e-13 69.3
MsaG017261 MtrunA17_Chr5g0402011 90.323 31 3 0 539 569 21 51 1.70e-13 67.0
MsaG017261 MtrunA17_Chr5g0401281 40.741 81 46 2 1112 1191 279 358 4.32e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG017261 AT1G79000.1 46.420 866 420 12 356 1191 832 1683 0.0 800
MsaG017261 AT1G79000.2 46.420 866 420 12 356 1191 832 1683 0.0 800
MsaG017261 AT1G79000.3 46.420 866 420 12 356 1191 808 1659 0.0 800
MsaG017261 AT1G16710.2 47.741 819 393 10 393 1191 860 1663 0.0 783
MsaG017261 AT1G16710.3 47.741 819 393 10 393 1191 863 1666 0.0 783
MsaG017261 AT1G16710.10 47.741 819 393 10 393 1191 863 1666 0.0 783
MsaG017261 AT1G16710.8 47.741 819 393 10 393 1191 863 1666 0.0 783
MsaG017261 AT1G16710.7 47.741 819 393 10 393 1191 863 1666 0.0 783
MsaG017261 AT1G16710.6 47.741 819 393 10 393 1191 824 1627 0.0 783
MsaG017261 AT1G16710.4 47.741 819 393 10 393 1191 824 1627 0.0 783
MsaG017261 AT1G16710.1 47.741 819 393 10 393 1191 889 1692 0.0 783
MsaG017261 AT1G16710.5 47.741 819 393 10 393 1191 824 1627 0.0 783
MsaG017261 AT3G12980.1 46.903 791 385 12 418 1191 883 1655 0.0 754
MsaG017261 AT3G12980.2 46.903 791 385 12 418 1191 802 1574 0.0 753
MsaG017261 AT1G55970.1 43.056 792 422 10 418 1191 677 1457 0.0 663
MsaG017261 AT1G55970.2 43.434 792 405 12 418 1191 677 1443 0.0 660
MsaG017261 AT1G67220.1 42.072 782 400 20 420 1172 604 1361 0.0 611
MsaG017261 AT1G16710.9 50.089 561 266 5 393 944 863 1418 0.0 580
MsaG017261 AT5G67480.1 42.308 78 43 2 1110 1185 271 348 4.93e-12 69.7
MsaG017261 AT5G67480.3 42.308 78 43 2 1110 1185 271 348 4.93e-12 69.7
MsaG017261 AT5G67480.2 42.308 78 43 2 1110 1185 282 359 5.06e-12 69.7

Find 233 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGCCTCAATTATTGTATT+TGG 0.083119 3:-107410801 None:intergenic
TTCTTTGTTCCTACTGAAAA+AGG 0.108559 3:+107412912 MsaT017261.1:CDS
CTGAACTTGGTGGGAATATT+TGG 0.140434 3:+107409148 MsaT017261.1:CDS
TTACCAAAAGCTGCTAATTT+TGG 0.160765 3:+107411771 MsaT017261.1:CDS
TCAACACCACTATGTCAATT+TGG 0.177074 3:+107414111 MsaT017261.1:CDS
GAAAGTGAATAAGCTGTTTC+TGG 0.192097 3:+107412073 MsaT017261.1:CDS
GGCAGGTCATGAACAATAAA+AGG 0.212094 3:-107409763 None:intergenic
CACTGAATGCAAGAAATTTC+AGG 0.225944 3:+107413446 MsaT017261.1:CDS
CAGCCTCAATTATTGTATTT+GGG 0.232255 3:-107410800 None:intergenic
CCCTGGTAGGCAATATCTTT+TGG 0.238306 3:-107413344 None:intergenic
CCAGAGTAGGGTTGTTTAAA+TGG 0.239132 3:-107413918 None:intergenic
AGAGTGGATTATTTGAAAAT+AGG 0.257666 3:+107413809 MsaT017261.1:CDS
TGACGGTTGTATGTCATTTC+GGG 0.258908 3:-107409294 None:intergenic
TTCCGAGTCTTTGCAATTCC+TGG 0.259668 3:-107414430 None:intergenic
AACTCATAGACTCGTTATTC+TGG 0.278374 3:-107410140 None:intergenic
GTGACGGTTGTATGTCATTT+CGG 0.290972 3:-107409295 None:intergenic
TTTGAGTCAACTTGTGTTCA+TGG 0.292920 3:-107414062 None:intergenic
GTCAAAACAGAGAGATTGTT+TGG 0.293545 3:+107410110 MsaT017261.1:intron
ATGGTCTTTAAAGCTCTATT+TGG 0.306293 3:-107413068 None:intergenic
CTACAACAACAAAAGAGATT+TGG 0.312602 3:+107411680 MsaT017261.1:CDS
ACAACTGATGAAGAATTTCT+TGG 0.316401 3:-107409180 None:intergenic
GCACCAAAATTAGCAGCTTT+TGG 0.316485 3:-107411774 None:intergenic
CTTTGTTTACCATGAGATAT+TGG 0.319700 3:+107412427 MsaT017261.1:CDS
TCTGATGCCGCTGGTTATTA+TGG 0.320032 3:+107409715 MsaT017261.1:CDS
ATATCCGCTGAAACAAGTTT+AGG 0.321167 3:-107410216 None:intergenic
ACTTGTTTCAGCGGATATTT+CGG 0.322049 3:+107410221 MsaT017261.1:CDS
CCACTCTTTGTTCTTCTCTC+AGG 0.324213 3:-107412389 None:intergenic
TCTCGTTTGCCATACTTTGA+TGG 0.326312 3:+107412954 MsaT017261.1:CDS
TTGCATCACCAGAATGTCTT+TGG 0.327789 3:-107413120 None:intergenic
GTTTCTCAACTTGCTACATA+TGG 0.336552 3:+107412569 MsaT017261.1:CDS
CATTTGCTCTGCTTGCTATA+AGG 0.336680 3:+107414023 MsaT017261.1:CDS
CACGAGTTCATGCTTAGAAT+TGG 0.340621 3:+107410266 MsaT017261.1:CDS
CGCATTCGGAGCCGAACTCC+TGG 0.358494 3:-107412307 None:intergenic
GGGTCAGATAGTCTCCCTTC+TGG 0.359944 3:-107409742 None:intergenic
GGAATGTACGCCCAGGAGTT+CGG 0.366380 3:+107412296 MsaT017261.1:CDS
TCTTTGGCAGTGTCTTTAGA+AGG 0.367904 3:-107413104 None:intergenic
CAACACCACTATGTCAATTT+GGG 0.370714 3:+107414112 MsaT017261.1:CDS
GGTGGGAAAATTACATTCAA+TGG 0.372058 3:+107411460 MsaT017261.1:CDS
CTTGCGAAGGGTTCTGAACT+TGG 0.374398 3:+107409135 MsaT017261.1:CDS
CAAACTGAAATTGATACTTC+TGG 0.380328 3:-107413852 None:intergenic
ATGTGTACACAACGCTGATT+TGG 0.380704 3:-107412335 None:intergenic
AGACACTGCCAAAGACATTC+TGG 0.381560 3:+107413112 MsaT017261.1:CDS
ACTGAAGAAAATATTATTGT+TGG 0.383324 3:+107412867 MsaT017261.1:CDS
TGCTTAGAATTGGAAGATAC+AGG 0.390600 3:+107410276 MsaT017261.1:CDS
CATGTTGTGGCGTACGCATC+AGG 0.393034 3:+107411359 MsaT017261.1:CDS
TCTTGATCTATAAGAGAATT+CGG 0.393830 3:-107412123 None:intergenic
TGCCATGAAGTGATAGCATC+TGG 0.393848 3:+107413408 MsaT017261.1:CDS
GGCAGTGTCTTTAGAAGGAT+TGG 0.396884 3:-107413099 None:intergenic
TATCCGCTGAAACAAGTTTA+GGG 0.397186 3:-107410215 None:intergenic
CTTCTGTTTCAGCAGATTGA+AGG 0.398990 3:+107412254 MsaT017261.1:CDS
CTGATTTGGATTGCCGCATT+CGG 0.399351 3:-107412321 None:intergenic
AAAATAGTTGCTACTTGATC+TGG 0.400825 3:-107409887 None:intergenic
GGTGCAAAATTCGAGTAAAT+CGG 0.403532 3:+107414361 MsaT017261.1:CDS
TCCCAGATGCTATCACTTCA+TGG 0.404024 3:-107413410 None:intergenic
GAGGACATACAAGGCAGAAC+TGG 0.410877 3:+107410621 MsaT017261.1:CDS
GTGGGAAAATTACATTCAAT+GGG 0.411726 3:+107411461 MsaT017261.1:CDS
CGTAACTTACCCGTTTCATA+TGG 0.413182 3:+107409841 MsaT017261.1:CDS
CTGCCTTGCTCTCCTGATGA+TGG 0.413683 3:+107409781 MsaT017261.1:CDS
AATGTAGAATACCACGTTGC+AGG 0.414844 3:+107414451 MsaT017261.1:CDS
TTCATATGGTGGAAGCAATC+TGG 0.416270 3:+107409855 MsaT017261.1:CDS
TCTGAGAAAGGAATCTGTTC+AGG 0.416816 3:+107410875 MsaT017261.1:CDS
CAGTAGTCTCCATCAAAGTA+TGG 0.418646 3:-107412963 None:intergenic
CCCTCGAAAGGCTTAGAATC+TGG 0.419221 3:+107410516 MsaT017261.1:CDS
TCAAAACAGAGAGATTGTTT+GGG 0.419623 3:+107410111 MsaT017261.1:intron
GCCTGTGCTCCTTCAAGAAA+AGG 0.420899 3:+107412592 MsaT017261.1:CDS
CATGGTTCTTGGCAAGTCCT+TGG 0.422145 3:-107411796 None:intergenic
AAGCAACGCATTCCGAATCT+TGG 0.427714 3:+107414681 MsaT017261.1:CDS
GTGCAAAATTCGAGTAAATC+GGG 0.429183 3:+107414362 MsaT017261.1:CDS
ATGTAAATCTTCAAATTGAA+TGG 0.432375 3:-107410184 None:intergenic
CGGCGTAGCTTATCATTCTT+CGG 0.442591 3:-107412658 None:intergenic
TATCCCATCCTGGTTGAATC+CGG 0.446469 3:-107410721 None:intergenic
TGGTCACTGAGCATGGTTCT+TGG 0.450291 3:-107411807 None:intergenic
TGCAGCTCCACGCCAAGATT+CGG 0.450882 3:-107414693 None:intergenic
ACAATATATTTCAAAAGTGC+TGG 0.451731 3:+107413974 MsaT017261.1:CDS
AAATGTGTGCATCAGAACTA+TGG 0.452913 3:-107413617 None:intergenic
GTCTTTGCAATTCCTGGAGT+GGG 0.453840 3:-107414424 None:intergenic
GGAAGAAGAATTTGATGCAC+AGG 0.454851 3:+107411402 MsaT017261.1:CDS
CCTGTGCTCCTTCAAGAAAA+GGG 0.454880 3:+107412593 MsaT017261.1:CDS
CAGTTAGAGACTATCGAGTC+TGG 0.455443 3:+107410486 MsaT017261.1:CDS
GCAGAGCAAATGGTACATTC+TGG 0.456546 3:-107414012 None:intergenic
AAATGACATACAACCGTCAC+TGG 0.459682 3:+107409298 MsaT017261.1:CDS
TTCTTGATTTGAGAACAGTT+TGG 0.463384 3:-107414318 None:intergenic
CACACACATATCAGCAAGTA+GGG 0.463928 3:-107409815 None:intergenic
TTCTAAGTGGTCACTGAGCA+TGG 0.465266 3:-107411814 None:intergenic
CTACTGGTGTGGTTATGTTA+TGG 0.465543 3:+107412980 MsaT017261.1:CDS
TGTTCTGAAAATCCAACTCC+TGG 0.467769 3:-107410311 None:intergenic
GTAGTAATAATTCCAGCATA+GGG 0.468557 3:-107409470 None:intergenic
ATGGACTTTCCCATTGAAGT+AGG 0.469146 3:-107410165 None:intergenic
ACTTACCACTGCTGCTTCAA+AGG 0.469361 3:+107409491 MsaT017261.1:CDS
CATCATCAGGAGAGCAAGGC+AGG 0.473198 3:-107409780 None:intergenic
TGAGCAATTTGCCCCTATGC+TGG 0.473268 3:+107409458 MsaT017261.1:CDS
TAGGGTTGTTTAAATGGTAG+AGG 0.474232 3:-107413912 None:intergenic
AACCCTACTCTGGTGACTGT+TGG 0.474451 3:+107413928 MsaT017261.1:CDS
GATGCACACATTTCAAAGAA+TGG 0.475962 3:+107413627 MsaT017261.1:CDS
ATCATTATGCTTAGTGTTGG+AGG 0.477828 3:-107413776 None:intergenic
GAAATACAGCAGAAACTCAA+TGG 0.479828 3:+107410542 MsaT017261.1:CDS
GCGAAATAAACCCCAGGAGT+TGG 0.480620 3:+107410299 MsaT017261.1:CDS
GAGGACATTCAAGGCAGAAC+CGG 0.485084 3:+107410702 MsaT017261.1:CDS
TTATGGAAGAGAGAGCAAAC+TGG 0.486815 3:+107411856 MsaT017261.1:CDS
TTTCTCAACTTGCTACATAT+GGG 0.487718 3:+107412570 MsaT017261.1:CDS
TACGCTGATTCAACGTCTCC+AGG 0.490165 3:-107409666 None:intergenic
TCATTATTTGCGTGTTTCAA+AGG 0.492280 3:-107409910 None:intergenic
GATATCATTATGCTTAGTGT+TGG 0.494216 3:-107413779 None:intergenic
GCCAAAAGATATTGCCTACC+AGG 0.497791 3:+107413343 MsaT017261.1:CDS
CGAGGTGCATACACTATGTC+AGG 0.500355 3:+107413650 MsaT017261.1:CDS
GATCTATAAGAGAATTCGGC+AGG 0.501906 3:-107412119 None:intergenic
CTTATAGCAAGCAGAGCAAA+TGG 0.504219 3:-107414022 None:intergenic
AGAACTGGATTCATCCAGGC+GGG 0.506173 3:+107410636 MsaT017261.1:CDS
TCGTGAGTCAAATGAGAAAA+CGG 0.506997 3:+107414137 MsaT017261.1:CDS
TTATACTAACTGCCCACTCC+AGG 0.508191 3:+107414412 MsaT017261.1:CDS
CACGCAGATGCTGAAACTGC+TGG 0.511708 3:+107414239 MsaT017261.1:intron
AGAACTTATTATTGTTCATG+AGG 0.512614 3:+107410674 MsaT017261.1:CDS
GGGGTTGATGAACCATCATC+AGG 0.513452 3:-107409793 None:intergenic
CGAAGGGTTCTGAACTTGGT+GGG 0.514839 3:+107409139 MsaT017261.1:CDS
AGTAGTAATAATTCCAGCAT+AGG 0.515149 3:-107409471 None:intergenic
GTTATAAGAATTCTAAAGGT+GGG 0.515230 3:+107411443 MsaT017261.1:CDS
GGTTATTATGGCGTTCCAGA+AGG 0.515241 3:+107409727 MsaT017261.1:CDS
GCCAGATTCTAAGCCTTTCG+AGG 0.516084 3:-107410517 None:intergenic
GATCATCATTGATGAATACT+TGG 0.516147 3:-107413890 None:intergenic
TTGCTTCCACCATATGAAAC+GGG 0.517072 3:-107409850 None:intergenic
ACATATTAGTAGTCTGAGAA+AGG 0.521580 3:+107410863 MsaT017261.1:CDS
CAGTCCGTGGAGAATCCTAC+TGG 0.523094 3:-107409261 None:intergenic
ATTGCTTCCACCATATGAAA+CGG 0.523926 3:-107409851 None:intergenic
AGCCTCAATTATTGTATTTG+GGG 0.527381 3:-107410799 None:intergenic
ATCCCCAAATACAATAATTG+AGG 0.528154 3:+107410797 MsaT017261.1:CDS
CTCCAGGAATTGCAAAGACT+CGG 0.528433 3:+107414428 MsaT017261.1:CDS
AGAAATTTCAGGAGTGTGAA+AGG 0.528641 3:+107413457 MsaT017261.1:CDS
TTCCAACAGTCACCAGAGTA+GGG 0.530507 3:-107413930 None:intergenic
GAACTTATTATTGTTCATGA+GGG 0.530986 3:+107410675 MsaT017261.1:CDS
TGGATTACTTACATGTGGAC+TGG 0.532864 3:-107409241 None:intergenic
GTTTCTAAGTCTGATGCCGC+TGG 0.533231 3:+107409706 MsaT017261.1:CDS
AACTTACCCGTTTCATATGG+TGG 0.534858 3:+107409844 MsaT017261.1:CDS
ATTACATCTGAGGAGGAAGC+AGG 0.535806 3:+107411265 MsaT017261.1:CDS
TTTCCAACAGTCACCAGAGT+AGG 0.537493 3:-107413931 None:intergenic
ACGTGTGAACAAATCAATCA+AGG 0.540321 3:-107410826 None:intergenic
TATTGTTCATGAGGGTGAAG+AGG 0.540740 3:+107410683 MsaT017261.1:CDS
TCTAAGCATGAACTCGTGCT+AGG 0.543758 3:-107410261 None:intergenic
AATGCAATAAATGCAAAAGA+TGG 0.545817 3:+107411637 MsaT017261.1:CDS
CCATTTAAACAACCCTACTC+TGG 0.546250 3:+107413918 MsaT017261.1:CDS
AGTCTTTGCAATTCCTGGAG+TGG 0.547250 3:-107414425 None:intergenic
TCTGCTTGCTATAAGGATAG+AGG 0.547525 3:+107414030 MsaT017261.1:CDS
TTTCAAATAATCCACTCTCA+AGG 0.548304 3:-107413804 None:intergenic
GCGAAGGGTTCTGAACTTGG+TGG 0.548679 3:+107409138 MsaT017261.1:CDS
AGAAGGATTGGCATGTCCCA+TGG 0.548735 3:-107413087 None:intergenic
GCACACACATATCAGCAAGT+AGG 0.548931 3:-107409816 None:intergenic
TCAGCGTATGCAAGCTCTAG+TGG 0.552958 3:+107409681 MsaT017261.1:CDS
GTTCTGAAAATCCAACTCCT+GGG 0.553233 3:-107410310 None:intergenic
AGGGAACGAGAATCTTGATA+AGG 0.553771 3:+107411890 MsaT017261.1:CDS
GAGGGTGAAGAGGACATTCA+AGG 0.555916 3:+107410693 MsaT017261.1:CDS
TCAACAGTAGGCCTACTCTC+AGG 0.556868 3:+107410568 MsaT017261.1:CDS
GTGTGTTATAAGAATTCTAA+AGG 0.558028 3:+107411439 MsaT017261.1:CDS
TTAAGTTCCTTCCTGAGAGT+AGG 0.559411 3:-107410579 None:intergenic
ACACATGCCAATTATGTCAA+AGG 0.562566 3:+107411299 MsaT017261.1:CDS
GCATTCGGAGCCGAACTCCT+GGG 0.563589 3:-107412306 None:intergenic
ATTAACACAGATTACATCTG+AGG 0.565214 3:+107411255 MsaT017261.1:intron
CATACTTTGATGGAGACTAC+TGG 0.567433 3:+107412964 MsaT017261.1:CDS
TATGGAAGAGAGAGCAAACT+GGG 0.568310 3:+107411857 MsaT017261.1:CDS
AGCTGAAAAGATGCTTGCGA+AGG 0.568364 3:+107409122 None:intergenic
GCAGGTCATGAACAATAAAA+GGG 0.568506 3:-107409762 None:intergenic
AGATATTGATGACGATGAAG+AGG 0.569424 3:+107410602 MsaT017261.1:CDS
AGGCAGAACTGGATTCATCC+AGG 0.569909 3:+107410632 MsaT017261.1:CDS
GTTGCTACTTGATCTGGTGT+TGG 0.574954 3:-107409881 None:intergenic
CGATTCCCAAATTGACATAG+TGG 0.580947 3:-107414117 None:intergenic
CCTGAGAGAAGAACAAAGAG+TGG 0.581788 3:+107412389 MsaT017261.1:CDS
TCATTATGCTTAGTGTTGGA+GGG 0.581798 3:-107413775 None:intergenic
AACTGGATTCATCCAGGCGG+GGG 0.582008 3:+107410638 MsaT017261.1:CDS
CAAAACAGAGAGATTGTTTG+GGG 0.582814 3:+107410112 MsaT017261.1:intron
GAACCGGATTCAACCAGGAT+GGG 0.586122 3:+107410718 MsaT017261.1:CDS
AGGCAGAACCGGATTCAACC+AGG 0.589059 3:+107410713 MsaT017261.1:CDS
GAACCATCATCAGGAGAGCA+AGG 0.589504 3:-107409784 None:intergenic
CAGGAGTTCGGCTCCGAATG+CGG 0.589631 3:+107412308 MsaT017261.1:CDS
TGATAGCATCTGGGAAGCGA+TGG 0.590031 3:+107413418 MsaT017261.1:CDS
CAGTAGGATTCTCCACGGAC+TGG 0.590312 3:+107409262 MsaT017261.1:CDS
CCAGATTCTAAGCCTTTCGA+GGG 0.591619 3:-107410516 None:intergenic
GAACAGTTTGGATAAGAGCA+TGG 0.592137 3:-107414306 None:intergenic
CAAACGAGAAGTTGTCACCT+TGG 0.592914 3:-107412940 None:intergenic
AAATAGAGCTTTAAAGACCA+TGG 0.593540 3:+107413070 MsaT017261.1:CDS
ATTCCCTAAACTTGTTTCAG+CGG 0.593760 3:+107410212 MsaT017261.1:CDS
GTTATTATGGCGTTCCAGAA+GGG 0.598014 3:+107409728 MsaT017261.1:CDS
TACAGGGCGAAATAAACCCC+AGG 0.598885 3:+107410293 MsaT017261.1:CDS
GTTATGTTATGGAAGCAGCC+AGG 0.598981 3:+107412991 MsaT017261.1:CDS
TACGAAAAGACGGAAAATGA+CGG 0.604361 3:+107410359 MsaT017261.1:CDS
GAAAGTGTTTCAAAAGAACA+AGG 0.604473 3:-107410450 None:intergenic
CAGCGTATGCAAGCTCTAGT+GGG 0.605184 3:+107409682 MsaT017261.1:CDS
AATGATATCATCCTTGAGAG+TGG 0.608883 3:+107413793 MsaT017261.1:CDS
CTGTGCTCCTTCAAGAAAAG+GGG 0.610873 3:+107412594 MsaT017261.1:CDS
TCTGGAATGATTCCCTCGAA+AGG 0.612821 3:+107410504 MsaT017261.1:CDS
TGTTATAAGAATTCTAAAGG+TGG 0.613504 3:+107411442 MsaT017261.1:CDS
TTCTGAAAATCCAACTCCTG+GGG 0.615940 3:-107410309 None:intergenic
GCCATGAAGTGATAGCATCT+GGG 0.616414 3:+107413409 MsaT017261.1:CDS
GACGATGAAGAGGACATACA+AGG 0.617846 3:+107410612 MsaT017261.1:CDS
TGATCAATCGACTTACAAGA+AGG 0.618959 3:+107410422 MsaT017261.1:CDS
AGAACCGGATTCAACCAGGA+TGG 0.619756 3:+107410717 MsaT017261.1:CDS
AATAGAGCTTTAAAGACCAT+GGG 0.619881 3:+107413071 MsaT017261.1:CDS
GCTGAAAAGATGCTTGCGAA+GGG 0.620277 3:+107409123 None:intergenic
TGCTACAACCTACGAAAAGA+CGG 0.621114 3:+107410349 MsaT017261.1:CDS
ATGGTAAACAAAGGTACGAA+GGG 0.622204 3:-107412417 None:intergenic
CCTACTGGATTACTTACATG+TGG 0.622783 3:-107409246 None:intergenic
ACAAACCTTTGAAGCAGCAG+TGG 0.625425 3:-107409496 None:intergenic
GCAGGAGGAATATATGAACC+TGG 0.625899 3:+107409648 MsaT017261.1:intron
AGAATGATAAGCTACGCCGT+TGG 0.627014 3:+107412662 MsaT017261.1:CDS
CCAAAAGATATTGCCTACCA+GGG 0.627033 3:+107413344 MsaT017261.1:CDS
CACACATATCAGCAAGTAGG+GGG 0.627930 3:-107409813 None:intergenic
CAATATCTCATGGTAAACAA+AGG 0.628488 3:-107412426 None:intergenic
ACTCAATGGAAATCAACAGT+AGG 0.634159 3:+107410556 MsaT017261.1:CDS
GCATGGTTCAGCATTAGTTG+CGG 0.636133 3:-107414289 None:intergenic
GGGATGATAACGCCAGTCCG+TGG 0.637062 3:-107409274 None:intergenic
CAGTAGGCCTACTCTCAGGA+AGG 0.640031 3:+107410572 MsaT017261.1:CDS
AAAGAAATGATCATATACGT+TGG 0.641068 3:-107412895 None:intergenic
CATGGTAAACAAAGGTACGA+AGG 0.641848 3:-107412418 None:intergenic
GTTTCTGGACATCATTCCAG+AGG 0.650501 3:+107412088 MsaT017261.1:CDS
TCATTGATGAATACTTGGCA+CGG 0.650719 3:-107413885 None:intergenic
TGCAAAATTCGAGTAAATCG+GGG 0.651340 3:+107414363 MsaT017261.1:CDS
GAAGAAGAATTTGATGCACA+GGG 0.652467 3:+107411403 MsaT017261.1:CDS
AACACAGATTACATCTGAGG+AGG 0.653744 3:+107411258 MsaT017261.1:intron
ATCTATAAGAGAATTCGGCA+GGG 0.656485 3:-107412118 None:intergenic
GCTTAGAATTGGAAGATACA+GGG 0.658280 3:+107410277 MsaT017261.1:CDS
GAACTGGATTCATCCAGGCG+GGG 0.658515 3:+107410637 MsaT017261.1:CDS
CCACATGTAAGTAATCCAGT+AGG 0.658631 3:+107409246 MsaT017261.1:CDS
TTTAGAATTCTTATAACACA+CGG 0.658685 3:-107411437 None:intergenic
TAGTAATAATTCCAGCATAG+GGG 0.660364 3:-107409469 None:intergenic
AGCTATTCTCTCATGCTCGT+AGG 0.662256 3:+107414340 MsaT017261.1:CDS
ACGCATTCCGAATCTTGGCG+TGG 0.671085 3:+107414686 MsaT017261.1:CDS
TAATCCAGTAGGATTCTCCA+CGG 0.679485 3:+107409257 MsaT017261.1:CDS
TTTGATGGAGACTACTGGTG+TGG 0.693838 3:+107412969 MsaT017261.1:CDS
ACACATTTCAAAGAATGGCG+AGG 0.706634 3:+107413632 MsaT017261.1:CDS
TGGAACGCCATAATAACCAG+CGG 0.726670 3:-107409722 None:intergenic
ACACATATCAGCAAGTAGGG+GGG 0.728095 3:-107409812 None:intergenic
ACACACATATCAGCAAGTAG+GGG 0.734890 3:-107409814 None:intergenic
CAGAACTGGATTCATCCAGG+CGG 0.736162 3:+107410635 MsaT017261.1:CDS
TGGGAAAATTACATTCAATG+GGG 0.742909 3:+107411462 MsaT017261.1:CDS
TTGATGAATACTTGGCACGG+CGG 0.746659 3:-107413882 None:intergenic
ACAGTCACACACCTGCAACG+TGG 0.756031 3:-107414462 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 107409132 107414751 107409132 ID=MsaG017261
Chr3 mRNA 107409132 107414751 107409132 ID=MsaT017261.1;Parent=MsaG017261
Chr3 exon 107409132 107409334 107409132 ID=MsaT017261.1.exon1;Parent=MsaT017261.1
Chr3 CDS 107409132 107409334 107409132 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Chr3 exon 107409440 107409512 107409440 ID=MsaT017261.1.exon2;Parent=MsaT017261.1
Chr3 CDS 107409440 107409512 107409440 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Chr3 exon 107409652 107409935 107409652 ID=MsaT017261.1.exon3;Parent=MsaT017261.1
Chr3 CDS 107409652 107409935 107409652 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Chr3 exon 107410122 107410896 107410122 ID=MsaT017261.1.exon4;Parent=MsaT017261.1
Chr3 CDS 107410122 107410896 107410122 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Chr3 exon 107411265 107411543 107411265 ID=MsaT017261.1.exon5;Parent=MsaT017261.1
Chr3 CDS 107411265 107411543 107411265 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Chr3 exon 107411630 107411911 107411630 ID=MsaT017261.1.exon6;Parent=MsaT017261.1
Chr3 CDS 107411630 107411911 107411630 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Chr3 exon 107412017 107412145 107412017 ID=MsaT017261.1.exon7;Parent=MsaT017261.1
Chr3 CDS 107412017 107412145 107412017 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Chr3 exon 107412248 107412448 107412248 ID=MsaT017261.1.exon8;Parent=MsaT017261.1
Chr3 CDS 107412248 107412448 107412248 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Chr3 exon 107412538 107412683 107412538 ID=MsaT017261.1.exon9;Parent=MsaT017261.1
Chr3 CDS 107412538 107412683 107412538 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Chr3 exon 107412842 107413145 107412842 ID=MsaT017261.1.exon10;Parent=MsaT017261.1
Chr3 CDS 107412842 107413145 107412842 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Chr3 exon 107413339 107413478 107413339 ID=MsaT017261.1.exon11;Parent=MsaT017261.1
Chr3 CDS 107413339 107413478 107413339 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Chr3 exon 107413614 107413671 107413614 ID=MsaT017261.1.exon12;Parent=MsaT017261.1
Chr3 CDS 107413614 107413671 107413614 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Chr3 exon 107413757 107414158 107413757 ID=MsaT017261.1.exon13;Parent=MsaT017261.1
Chr3 CDS 107413757 107414158 107413757 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Chr3 exon 107414246 107414472 107414246 ID=MsaT017261.1.exon14;Parent=MsaT017261.1
Chr3 CDS 107414246 107414472 107414246 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Chr3 exon 107414655 107414751 107414655 ID=MsaT017261.1.exon15;Parent=MsaT017261.1
Chr3 CDS 107414655 107414751 107414655 ID=cds.MsaT017261.1;Parent=MsaT017261.1
Gene Sequence

>MsaT017261.1

ATGCTTGCGAAGGGTTCTGAACTTGGTGGGAATATTTGGAGAGAATTGCCAAGAAATTCTTCATCAGTTGTCTCAAACACTCCGCAAAAGAGATGTTTTGATAAATTATCCAGTCCACATGTAAGTAATCCAGTAGGATTCTCCACGGACTGGCGTTATCATCCCGAAATGACATACAACCGTCACTGGATAAGAAAAAGAATTTTTGAAATCATTCAGAATGAGCAATTTGCCCCTATGCTGGAATTATTACTACTTACCACTGCTGCTTCAAAGGAGGAATATATGAACCTGGAGACGTTGAATCAGCGTATGCAAGCTCTAGTGGGTGTTTCTAAGTCTGATGCCGCTGGTTATTATGGCGTTCCAGAAGGGAGACTATCTGACCCTTTTATTGTTCATGACCTGCCTTGCTCTCCTGATGATGGTTCATCAACCCCCCTACTTGCTGATATGTGTGTGCTTCGTAACTTACCCGTTTCATATGGTGGAAGCAATCTGGATGCCAACACCAGATCAAGTAGCAACTATTTTCCTTTGAAACACGCAAATAATGATATAGATTGTTTGGGGTTTATCCAGAATAACGAGTCTATGAGTTTTCCTACTTCAATGGGAAAGTCCATTCAATTTGAAGATTTACATTCGACATTCCCTAAACTTGTTTCAGCGGATATTTCGGAACAATCTAATCTTTTTCCTAGCACGAGTTCATGCTTAGAATTGGAAGATACAGGGCGAAATAAACCCCAGGAGTTGGATTTTCAGAACAGTTTCACTCATGCCATGCTACAACCTACGAAAAGACGGAAAATGACGGAGTTTGCTTTTGACGTTTCTTGGGTTAATGATGCAAGTTCTGATCAATCGACTTACAAGAAGGCTCAACCTTGTTCTTTTGAAACACTTTCAGAAGTGCAGCAACAGTTAGAGACTATCGAGTCTGGAATGATTCCCTCGAAAGGCTTAGAATCTGGCATGAAATACAGCAGAAACTCAATGGAAATCAACAGTAGGCCTACTCTCAGGAAGGAACTTAAAGATATTGATGACGATGAAGAGGACATACAAGGCAGAACTGGATTCATCCAGGCGGGGGTAAATGCTAAAAAAGAACTTATTATTGTTCATGAGGGTGAAGAGGACATTCAAGGCAGAACCGGATTCAACCAGGATGGGATAAACGATAAAAAAGAAATCATCGAGTCAAAAGATGATCAAGAGAAGCAAACAAAATCCCCAAATACAATAATTGAGGCTGTTTCCTTGATTGATTTGTTCACACGTGATCAAATAGAAGAACATATTAGTAGTCTGAGAAAGGAATCTGTTCAGATTACATCTGAGGAGGAAGCAGGAATTGATGCAAACACATGCCAATTATGTCAAAGGAAAAAGCTTTACTTTGCACCAGTGCCAATTTTTTGTTCATGTTGTGGCGTACGCATCAGGAGAACCTATTTTTGTAGAAAGGAAGAAGAATTTGATGCACAGGGTTGCATTTGCACCGTGTGTTATAAGAATTCTAAAGGTGGGAAAATTACATTCAATGGGGCATTTGTTTCTAAGACAAATCTCGAAAAAAAGAATAACGATGAAGTTTTTGAAGAACCTTGGGTTGAATGCAATAAATGCAAAAGATGGCAGCATCAAATATGTGCACTCTACAACAACAAAAGAGATTTGGATTGCAGTGCTGAGTATATATGTCCTGTATGCCGCTTAAAAGAAATTAAAAACGGAATTCATGTTCCTTTACCAAAAGCTGCTAATTTTGGTGCCAAGGACTTGCCAAGAACCATGCTCAGTGACCACTTAGAAAAAAGACTTTTTGAGCGTCTTATGGAAGAGAGAGCAAACTGGGAAAAAGTTGAAGGGAACGAGAATCTTGATAAGGTTTCAGCAGCAGAAAGTCTTTCTATTAGAGAAGTGTTATCTGTCGACAAACAATTGAAAGTGAATAAGCTGTTTCTGGACATCATTCCAGAGGAAAATTACCCTGCCGAATTCTCTTATAGATCAAGAGTTATTCTTCTGTTTCAGCAGATTGAAGGAGTAGATATATGCATTTTTGGAATGTACGCCCAGGAGTTCGGCTCCGAATGCGGCAATCCAAATCAGCGTTGTGTACACATTTCATATCTTGATTCTGTCAAGTATTTTAGGCCTGAGAGAAGAACAAAGAGTGGAGAAGCCCTTCGTACCTTTGTTTACCATGAGATATTGATTGGATACCTTGATTTTTGTAAGAAACGGGGTTTCTCAACTTGCTACATATGGGCCTGTGCTCCTTCAAGAAAAGGGGATGATTATATACTATATTGTCATCCTGAAGAGCAAAAGACTCCGAAGAATGATAAGCTACGCCGTTGGTATCTTTCTATGATAAAAAAGGCTACTGAAGAAAATATTATTGTTGGTTTAACCAACGTATATGATCATTTCTTTGTTCCTACTGAAAAAGGGAACTCCAAGGTGACAACTTCTCGTTTGCCATACTTTGATGGAGACTACTGGTGTGGTTATGTTATGGAAGCAGCCAGGACCATTGAAAAAGAGAGCGGAGGAGACTATGAAAAGATGTTGAAGAAACAAGTGCCAAATAGAGCTTTAAAGACCATGGGACATGCCAATCCTTCTAAAGACACTGCCAAAGACATTCTGGTGATGCAAAAAGTTGGCCAAAAGATATTGCCTACCAGGGAAAACTTCATCATAGCTCACTTGCAGTATTCATGCATGCACTGCCATGAAGTGATAGCATCTGGGAAGCGATGGTTTTGCACTGAATGCAAGAAATTTCAGGAGTGTGAAAGATGCCATAGTTCTGATGCACACATTTCAAAGAATGGCGAGGTGCATACACTATGTCAGGCTGTTGTTGATGATATTCCCTCCAACACTAAGCATAATGATATCATCCTTGAGAGTGGATTATTTGAAAATAGGAACAGCCTTTTGAGTTTTTGCCAGAAGTATCAATTTCAGTTTGACATACTCCGCCGTGCCAAGTATTCATCAATGATGATCCTCTACCATTTAAACAACCCTACTCTGGTGACTGTTGGAAAATGTAGCATTTGTTATGCACACAATATATTTCAAAAGTGCTGGAAATGTGAGATTTGTCCAGAATGTACCATTTGCTCTGCTTGCTATAAGGATAGAGGTGCTAACTGCCATGAACACAAGTTGACTCAAAATGAACTCACATTGACTCAAAATTATTCAACACCACTATGTCAATTTGGGAATCGTGAGTCAAATGAGAAAACGATGCTGAAACTGCTGGATGTTTTGAAGCATGCATCTCAATGTTCCGCAACTAATGCTGAACCATGCTCTTATCCAAACTGTTCTCAAATCAAGAAGCTATTCTCTCATGCTCGTAGGTGCAAAATTCGAGTAAATCGGGGATGCCAGCACTGTAAAAAGATATGGTTTATACTAACTGCCCACTCCAGGAATTGCAAAGACTCGGAATGTAGAATACCACGTTGCAGGGATCTGAAGAAGCATATAGAATCGAAAGCAACGCATTCCGAATCTTGGCGTGGAGCTGCAGTTATTGAAAGCGACACAGCAGTCGTTGATCAATGA

Protein sequence

>MsaT017261.1

MLAKGSELGGNIWRELPRNSSSVVSNTPQKRCFDKLSSPHVSNPVGFSTDWRYHPEMTYNRHWIRKRIFEIIQNEQFAPMLELLLLTTAASKEEYMNLETLNQRMQALVGVSKSDAAGYYGVPEGRLSDPFIVHDLPCSPDDGSSTPLLADMCVLRNLPVSYGGSNLDANTRSSSNYFPLKHANNDIDCLGFIQNNESMSFPTSMGKSIQFEDLHSTFPKLVSADISEQSNLFPSTSSCLELEDTGRNKPQELDFQNSFTHAMLQPTKRRKMTEFAFDVSWVNDASSDQSTYKKAQPCSFETLSEVQQQLETIESGMIPSKGLESGMKYSRNSMEINSRPTLRKELKDIDDDEEDIQGRTGFIQAGVNAKKELIIVHEGEEDIQGRTGFNQDGINDKKEIIESKDDQEKQTKSPNTIIEAVSLIDLFTRDQIEEHISSLRKESVQITSEEEAGIDANTCQLCQRKKLYFAPVPIFCSCCGVRIRRTYFCRKEEEFDAQGCICTVCYKNSKGGKITFNGAFVSKTNLEKKNNDEVFEEPWVECNKCKRWQHQICALYNNKRDLDCSAEYICPVCRLKEIKNGIHVPLPKAANFGAKDLPRTMLSDHLEKRLFERLMEERANWEKVEGNENLDKVSAAESLSIREVLSVDKQLKVNKLFLDIIPEENYPAEFSYRSRVILLFQQIEGVDICIFGMYAQEFGSECGNPNQRCVHISYLDSVKYFRPERRTKSGEALRTFVYHEILIGYLDFCKKRGFSTCYIWACAPSRKGDDYILYCHPEEQKTPKNDKLRRWYLSMIKKATEENIIVGLTNVYDHFFVPTEKGNSKVTTSRLPYFDGDYWCGYVMEAARTIEKESGGDYEKMLKKQVPNRALKTMGHANPSKDTAKDILVMQKVGQKILPTRENFIIAHLQYSCMHCHEVIASGKRWFCTECKKFQECERCHSSDAHISKNGEVHTLCQAVVDDIPSNTKHNDIILESGLFENRNSLLSFCQKYQFQFDILRRAKYSSMMILYHLNNPTLVTVGKCSICYAHNIFQKCWKCEICPECTICSACYKDRGANCHEHKLTQNELTLTQNYSTPLCQFGNRESNEKTMLKLLDVLKHASQCSATNAEPCSYPNCSQIKKLFSHARRCKIRVNRGCQHCKKIWFILTAHSRNCKDSECRIPRCRDLKKHIESKATHSESWRGAAVIESDTAVVDQ*