AlfalfaGEDB | MsaG017323

M. sativa ssp. caerulea / MsaG017323

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF10533.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017323	XP_003603547.1	82.483	451	29	4	1	451	1	401	0.0	671

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017323	sp\|Q9SV15\|WRK11_ARATH	63.314	169	52	5	272	434	152	316	1.96e-60	203
MsaG017323	sp\|Q9SV15\|WRK11_ARATH	35.769	260	104	9	1	219	1	238	4.11e-29	119

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017323	tr\|G7J2S9\|G7J2S9_MEDTR	82.483	451	29	4	1	451	1	401	0.0	671

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TFs/TRs:

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Gene ID	Type	Classification
MsaG017323	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG017323	0.866920	4.029073e-65	4.113478e-62
MsaG000023	MsaG017323	0.856163	7.516080e-62	5.064986e-59
MsaG000216	MsaG017323	0.817168	6.596310e-52	1.347642e-49
MsaG000219	MsaG017323	0.891586	7.682310e-74	2.459807e-70
MsaG000286	MsaG017323	0.802496	9.167844e-49	1.311753e-46
MsaG000377	MsaG017323	0.830501	5.100768e-55	1.497411e-52
MsaG000413	MsaG017323	0.822857	3.338211e-53	7.922460e-51
MsaG000545	MsaG017323	0.892174	4.493622e-74	1.485280e-70
MsaG000553	MsaG017323	0.811790	1.007659e-50	1.797769e-48
MsaG000566	MsaG017323	0.858666	1.377586e-62	1.018290e-59

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017323	MtrunA17_Chr3g0139021	82.483	451	29	4	1	451	1	401	0.0	671
MsaG017323	MtrunA17_Chr1g0147881	61.635	159	51	5	279	432	178	331	8.79e-57	191
MsaG017323	MtrunA17_Chr1g0147881	43.192	213	84	9	1	179	1	210	3.47e-29	117
MsaG017323	MtrunA17_Chr4g0071521	62.143	140	43	4	281	419	174	304	8.85e-52	177
MsaG017323	MtrunA17_Chr4g0071521	30.469	256	122	9	1	219	1	237	3.07e-13	70.5
MsaG017323	MtrunA17_Chr7g0228941	92.593	81	5	1	339	419	31	110	4.15e-48	161
MsaG017323	MtrunA17_Chr4g0053281	58.871	124	49	1	296	417	200	323	4.44e-42	152
MsaG017323	MtrunA17_Chr5g0401821	59.483	116	46	1	303	417	141	256	5.55e-40	144
MsaG017323	MtrunA17_Chr1g0184691	62.500	80	30	0	338	417	271	350	2.68e-31	123
MsaG017323	MtrunA17_Chr2g0293481	48.454	97	45	2	326	417	228	324	5.47e-24	104

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017323	AT4G31550.2	63.690	168	52	4	272	434	152	315	3.81e-63	207
MsaG017323	AT4G31550.2	35.907	259	104	9	1	219	1	237	3.45e-30	119
MsaG017323	AT4G31550.1	63.314	169	52	5	272	434	152	316	1.99e-61	203
MsaG017323	AT4G31550.1	35.769	260	104	9	1	219	1	238	4.17e-30	119
MsaG017323	AT2G24570.1	58.084	167	57	6	278	436	154	315	6.40e-53	181
MsaG017323	AT2G24570.1	37.705	244	118	11	1	219	1	235	9.14e-24	101
MsaG017323	AT4G24240.1	51.923	156	58	5	267	417	195	338	2.55e-42	153
MsaG017323	AT4G31550.3	64.912	114	35	3	272	380	152	265	1.04e-37	139
MsaG017323	AT4G31550.3	35.907	259	104	9	1	219	1	237	2.30e-30	119
MsaG017323	AT2G30590.1	58.879	107	41	2	321	424	271	377	6.75e-37	139

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Find 167 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGTCACAATCACTC+CGG	0.649448	3:-108047810	MsaT017323.1:CDS
AAAATTGTCCAGCTAGGAAA+AGG	0.409042	3:-108047222	MsaT017323.1:CDS
AAAGATGAGTAAGATGTAAG+AGG	0.475709	3:+108047951	None:intergenic
AAAGGTTGGTTATGGCTCTT+AGG	0.300408	3:+108048431	None:intergenic
AAATTGTCCAGCTAGGAAAA+GGG	0.578813	3:-108047221	MsaT017323.1:CDS
AACACTGCCGTCGCCGGTGA+TGG	0.454613	3:+108048304	None:intergenic
AACGCTTCTATCGCCGGTGA+TGG	0.481498	3:+108047917	None:intergenic
AAGAAAGAGGCTGTTTACCA+CGG	0.623906	3:+108048093	None:intergenic
AAGTGAGTTTAAGCCTTGTG+TGG	0.663342	3:+108048682	None:intergenic
AATAATTCTGGTTCAGGTTC+AGG	0.270724	3:-108047103	MsaT017323.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	108047051	108048771	108047051	ID=MsaG017323
Chr3	mRNA	108047051	108048771	108047051	ID=MsaT017323.1;Parent=MsaG017323
Chr3	exon	108047051	108047270	108047051	ID=MsaT017323.1.exon3;Parent=MsaT017323.1
Chr3	CDS	108047051	108047270	108047051	ID=cds.MsaT017323.1;Parent=MsaT017323.1
Chr3	exon	108047369	108047494	108047369	ID=MsaT017323.1.exon2;Parent=MsaT017323.1
Chr3	CDS	108047369	108047494	108047369	ID=cds.MsaT017323.1;Parent=MsaT017323.1
Chr3	exon	108047759	108048771	108047759	ID=MsaT017323.1.exon1;Parent=MsaT017323.1
Chr3	CDS	108047759	108048771	108047759	ID=cds.MsaT017323.1;Parent=MsaT017323.1

Gene Sequence

>MsaT017323.1

ATGACTTTGAGATTGATGGATTTTCCAAACATGGATGAGGAAAAAGAAAAGGCAATATTAGAAACTGCCACACAAGGCTTAAACTCACTTGCCAACTTCGCTAATAATGTCTCTCCCCAACCCTCTCTTCAAAACACTGAACTCACCAACATCACTGTTTCAGACCTCAAGAAACTATCCAACTTACTCCACCGTAAAGGCCACGCTCGCTTCCGCCGCAATCCAAATGCAACCCCTGATCAACCGCTGCCACAAACTTCCACTCCCTCCACCTCTACTCAGCCACCTCCACCACCACCACTTCAAATTCAAATTCCTCCTAAGAGCCATAACCAACCTTTAACTCTCGATTTTACTAAACCTTACACCTTTAAATCTAACCCTAAATCCTTAGATCTAGAAATCCCCAAGGAAACATTTAGTTTTCCATCACTCCTATCCTCCGCCATCACCGGCGACGGCAGTGTTTCCAATGGCAGACTTGGTCCATCTCAAATTCTCACCCCTGCTGTCTCCAGCGGTAAACCACCTCTTTCACCTAACTCATCATTCATGTCATCTGCCTTTGCTCGCGATATCACCGGCGACGGCAGTGTCTCCAATGGCAGGCTAGGTCCATGTCCAATGCCATCTACCATCCCCACCCCCGCTGTCTCCCGTGGTAAACAGCCTCTTTCTTCTATCTCACCATTCATGTCCTCCCCCATCACCGGCCATTACACCGGCGAAGCCAGTGTTTCCAATGGCAGACTAGGACCATCTCCACTCCTCACCCCTTCTATCTCCCGTGGTAAACAGCCTCTTACATCTTACTCATCTTTCATGTCCTCCGCCATCACCGGCGATAGAAGCGTTTCCAGCGGCAGGATCGGTCCATCTTATACCCTCACCCCTGCTGTCTCTGGTGGTAAACCGCCTCTTTCATCGCCGTCATTGAAGAAAAGCTGTCACAATCACTCCGGCGATGTCTCTGGGAAAACCTCCGCATCTAAGAAATGCCACTGCCAGAAAAGGAAAAATCGGAACAGGAGACAAGTGAGAGTCCCGTGCATAAGTTCAAGGATTGCTGATATACCAGCAGATGAGTATTCATGGAGGAAGTATGGCTCCAAACCGATTAAGGGAACACCACATCCAAGGGGTTATTATAGGTGCACTATGTCTAAAAATTGTCCAGCTAGGAAAAGGGTGGAGAAGGCGAAAGATGATCCAAATATACTAGTTGTAACGTATGAGTTTGAGCATCGTCACCACCAGCTTCATAATCAAGCCCCAATGCAAGAGAATAATTCTGGTTCAGGTTCAGGGAGTGGGAGCATGGATTTGGGGGTGTTTGAGCTAACCTTAGGAGGGAATTAG

Protein sequence

>MsaT017323.1

MTLRLMDFPNMDEEKEKAILETATQGLNSLANFANNVSPQPSLQNTELTNITVSDLKKLSNLLHRKGHARFRRNPNATPDQPLPQTSTPSTSTQPPPPPPLQIQIPPKSHNQPLTLDFTKPYTFKSNPKSLDLEIPKETFSFPSLLSSAITGDGSVSNGRLGPSQILTPAVSSGKPPLSPNSSFMSSAFARDITGDGSVSNGRLGPCPMPSTIPTPAVSRGKQPLSSISPFMSSPITGHYTGEASVSNGRLGPSPLLTPSISRGKQPLTSYSSFMSSAITGDRSVSSGRIGPSYTLTPAVSGGKPPLSSPSLKKSCHNHSGDVSGKTSASKKCHCQKRKNRNRRQVRVPCISSRIADIPADEYSWRKYGSKPIKGTPHPRGYYRCTMSKNCPARKRVEKAKDDPNILVVTYEFEHRHHQLHNQAPMQENNSGSGSGSGSMDLGVFELTLGGN*