AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG017323


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG017323 MtrunA17_Chr3g0139021 82.483 451 29 4 1 451 1 401 0.0 671
MsaG017323 MtrunA17_Chr1g0147881 61.635 159 51 5 279 432 178 331 8.79e-57 191
MsaG017323 MtrunA17_Chr1g0147881 43.192 213 84 9 1 179 1 210 3.47e-29 117
MsaG017323 MtrunA17_Chr4g0071521 62.143 140 43 4 281 419 174 304 8.85e-52 177
MsaG017323 MtrunA17_Chr4g0071521 30.469 256 122 9 1 219 1 237 3.07e-13 70.5
MsaG017323 MtrunA17_Chr7g0228941 92.593 81 5 1 339 419 31 110 4.15e-48 161
MsaG017323 MtrunA17_Chr4g0053281 58.871 124 49 1 296 417 200 323 4.44e-42 152
MsaG017323 MtrunA17_Chr5g0401821 59.483 116 46 1 303 417 141 256 5.55e-40 144
MsaG017323 MtrunA17_Chr1g0184691 62.500 80 30 0 338 417 271 350 2.68e-31 123
MsaG017323 MtrunA17_Chr2g0293481 48.454 97 45 2 326 417 228 324 5.47e-24 104
MsaG017323 MtrunA17_Chr2g0284321 52.439 82 38 1 337 417 11 92 8.85e-24 99.0
MsaG017323 MtrunA17_Chr2g0319961 49.462 93 31 2 336 417 50 137 5.42e-23 97.8
MsaG017323 MtrunA17_Chr7g0248691 43.396 106 49 3 312 417 117 211 2.54e-22 97.4
MsaG017323 MtrunA17_Chr8g0379461 40.952 105 55 2 320 417 29 133 2.95e-21 92.4
MsaG017323 MtrunA17_Chr2g0289181 56.250 64 28 0 354 417 8 71 3.11e-21 92.4
MsaG017323 MtrunA17_Chr8g0348311 50.000 80 39 1 338 417 134 212 1.69e-20 92.4
MsaG017323 MtrunA17_Chr7g0270051 43.023 86 40 1 341 417 25 110 2.01e-20 90.9
MsaG017323 MtrunA17_Chr8g0387501 58.333 60 25 0 360 419 129 188 3.47e-18 84.3
MsaG017323 MtrunA17_Chr5g0418781 44.706 85 46 1 336 420 100 183 4.58e-18 84.3
MsaG017323 MtrunA17_Chr2g0288871 48.649 74 38 0 344 417 289 362 1.80e-17 84.7
MsaG017323 MtrunA17_Chr7g0238921 37.615 109 53 3 339 436 106 210 2.40e-17 82.8
MsaG017323 MtrunA17_Chr1g0202461 43.373 83 46 1 336 417 236 318 2.62e-17 83.6
MsaG017323 MtrunA17_Chr8g0383351 51.613 62 29 1 356 417 156 216 3.12e-17 80.9
MsaG017323 MtrunA17_Chr1g0194481 40.217 92 54 1 326 417 124 214 5.07e-17 82.0
MsaG017323 MtrunA17_Chr3g0099641 45.946 74 40 0 344 417 235 308 6.26e-17 82.8
MsaG017323 MtrunA17_Chr2g0322391 47.297 74 39 0 344 417 333 406 7.02e-17 83.2
MsaG017323 MtrunA17_Chr3g0129361 51.613 62 29 1 356 417 140 200 7.91e-17 79.3
MsaG017323 MtrunA17_Chr5g0443131 47.222 72 37 1 347 418 144 214 9.03e-17 80.9
MsaG017323 MtrunA17_Chr7g0270191 38.614 101 60 2 317 417 103 201 1.00e-16 80.5
MsaG017323 MtrunA17_Chr8g0335811 44.706 85 43 3 336 417 127 210 1.03e-16 79.3
MsaG017323 MtrunA17_Chr4g0075201 47.297 74 39 0 344 417 251 324 1.05e-16 82.4
MsaG017323 MtrunA17_Chr7g0270831 45.946 74 40 0 344 417 200 273 2.13e-16 80.9
MsaG017323 MtrunA17_Chr5g0445311 47.297 74 38 1 344 417 348 420 3.68e-16 80.9
MsaG017323 MtrunA17_Chr4g0051881 45.070 71 38 1 347 417 165 234 3.83e-16 79.3
MsaG017323 MtrunA17_Chr1g0150281 52.632 57 27 0 361 417 141 197 4.08e-16 78.6
MsaG017323 MtrunA17_Chr3g0101131 43.678 87 42 2 344 424 399 484 5.03e-16 80.5
MsaG017323 MtrunA17_Chr5g0432161 48.052 77 39 1 341 417 402 477 5.48e-16 80.5
MsaG017323 MtrunA17_Chr3g0106491 47.436 78 40 1 340 417 345 421 7.61e-16 79.7
MsaG017323 MtrunA17_Chr7g0263531 52.239 67 31 1 352 418 353 418 8.85e-16 79.3
MsaG017323 MtrunA17_Chr7g0263531 45.122 82 38 4 356 436 184 259 7.96e-13 70.1
MsaG017323 MtrunA17_Chr2g0294231 45.333 75 40 1 343 417 186 259 1.38e-15 78.2
MsaG017323 MtrunA17_Chr7g0216891 48.101 79 33 2 341 417 204 276 1.54e-15 79.0
MsaG017323 MtrunA17_Chr4g0060271 47.368 76 36 3 344 417 239 312 1.64e-15 79.0
MsaG017323 MtrunA17_Chr4g0001361 41.379 87 44 2 351 434 150 232 1.98e-15 77.0
MsaG017323 MtrunA17_Chr2g0333851 36.047 86 43 1 344 417 141 226 2.00e-15 77.0
MsaG017323 MtrunA17_Chr1g0150801 43.662 71 39 1 347 417 89 158 2.38e-15 73.6
MsaG017323 MtrunA17_Chr7g0218081 53.226 62 28 1 356 417 406 466 2.97e-15 77.8
MsaG017323 MtrunA17_Chr7g0218081 46.053 76 38 3 357 431 224 297 1.49e-13 72.8
MsaG017323 MtrunA17_Chr3g0079691 39.604 101 55 2 322 417 452 551 3.42e-15 78.2
MsaG017323 MtrunA17_Chr3g0079691 47.368 57 28 2 361 417 281 335 2.64e-11 65.9
MsaG017323 MtrunA17_Chr3g0136961 45.455 66 34 1 361 426 139 202 3.45e-15 75.9
MsaG017323 MtrunA17_Chr1g0150271 51.667 60 29 0 358 417 99 158 3.97e-15 75.1
MsaG017323 MtrunA17_Chr8g0387981 40.816 98 46 3 336 422 100 196 4.01e-15 76.6
MsaG017323 MtrunA17_Chr4g0074001 55.000 60 26 1 358 417 357 415 4.77e-15 77.4
MsaG017323 MtrunA17_Chr4g0051181 46.667 75 36 1 343 417 230 300 5.29e-15 77.0
MsaG017323 MtrunA17_Chr4g0068541 44.595 74 40 1 344 417 192 264 9.17e-15 75.9
MsaG017323 MtrunA17_Chr7g0249311 35.821 134 60 5 318 431 330 457 1.01e-14 76.6
MsaG017323 MtrunA17_Chr7g0249311 43.939 66 35 2 356 421 175 238 6.69e-11 64.7
MsaG017323 MtrunA17_Chr2g0302391 41.333 75 44 0 344 418 195 269 1.40e-14 75.5
MsaG017323 MtrunA17_Chr1g0189391 41.584 101 46 4 329 417 55 154 1.48e-14 74.7
MsaG017323 MtrunA17_Chr5g0418191 50.000 62 30 1 356 417 316 376 1.69e-14 75.1
MsaG017323 MtrunA17_Chr5g0418191 47.761 67 32 3 352 417 142 206 1.56e-11 65.9
MsaG017323 MtrunA17_Chr4g0004911 42.857 77 43 1 341 417 317 392 2.28e-14 75.1
MsaG017323 MtrunA17_Chr6g0485431 29.577 213 118 10 222 417 14 211 2.32e-14 74.3
MsaG017323 MtrunA17_Chr7g0249301 46.154 78 38 2 343 417 272 348 6.72e-14 73.2
MsaG017323 MtrunA17_Chr7g0249301 49.123 57 27 2 361 417 63 117 5.71e-11 63.9
MsaG017323 MtrunA17_Chr4g0042831 48.387 62 31 1 356 417 274 334 9.90e-14 72.4
MsaG017323 MtrunA17_Chr7g0275531 42.553 94 46 5 336 424 92 182 1.17e-13 72.0
MsaG017323 MtrunA17_Chr1g0188941 40.260 77 45 1 341 417 32 107 5.36e-13 65.5
MsaG017323 MtrunA17_Chr3g0126391 52.632 57 25 1 361 415 134 190 5.83e-13 69.7
MsaG017323 MtrunA17_Chr7g0243891 32.143 140 83 3 278 417 303 430 6.31e-13 70.9
MsaG017323 MtrunA17_Chr7g0224801 45.161 62 33 1 356 417 89 149 1.48e-12 65.9
MsaG017323 MtrunA17_Chr3g0129321 41.935 62 35 1 357 418 115 175 3.30e-12 65.5
MsaG017323 MtrunA17_Chr8g0383251 44.262 61 33 1 357 417 105 164 3.55e-12 65.1
MsaG017323 MtrunA17_Chr4g0025051 45.614 57 31 0 361 417 336 392 7.01e-12 67.4
MsaG017323 MtrunA17_Chr5g0447701 43.662 71 39 1 347 417 239 308 7.41e-12 67.0
MsaG017323 MtrunA17_Chr4g0025061 40.580 69 40 1 350 417 349 417 1.83e-11 66.2
MsaG017323 MtrunA17_Chr8g0347251 49.123 57 27 1 361 415 137 193 6.65e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG017323 AT4G31550.2 63.690 168 52 4 272 434 152 315 3.81e-63 207
MsaG017323 AT4G31550.2 35.907 259 104 9 1 219 1 237 3.45e-30 119
MsaG017323 AT4G31550.1 63.314 169 52 5 272 434 152 316 1.99e-61 203
MsaG017323 AT4G31550.1 35.769 260 104 9 1 219 1 238 4.17e-30 119
MsaG017323 AT2G24570.1 58.084 167 57 6 278 436 154 315 6.40e-53 181
MsaG017323 AT2G24570.1 37.705 244 118 11 1 219 1 235 9.14e-24 101
MsaG017323 AT4G24240.1 51.923 156 58 5 267 417 195 338 2.55e-42 153
MsaG017323 AT4G31550.3 64.912 114 35 3 272 380 152 265 1.04e-37 139
MsaG017323 AT4G31550.3 35.907 259 104 9 1 219 1 237 2.30e-30 119
MsaG017323 AT2G30590.1 58.879 107 41 2 321 424 271 377 6.75e-37 139
MsaG017323 AT2G23320.1 54.867 113 46 3 309 417 186 297 1.20e-36 137
MsaG017323 AT5G28650.1 44.828 174 80 6 248 420 164 322 1.72e-36 137
MsaG017323 AT3G04670.1 45.238 168 74 5 254 420 172 322 3.27e-36 136
MsaG017323 AT4G24240.2 50.420 119 42 5 267 380 195 301 3.76e-24 102
MsaG017323 AT3G58710.2 49.462 93 31 2 336 417 40 127 3.79e-23 99.0
MsaG017323 AT2G34830.1 50.575 87 38 2 336 417 186 272 3.90e-23 101
MsaG017323 AT2G34830.2 50.575 87 38 2 336 417 195 281 5.24e-23 101
MsaG017323 AT1G29280.1 61.017 59 23 0 359 417 73 131 7.86e-23 97.8
MsaG017323 AT4G01250.1 44.898 98 49 1 320 417 93 185 1.25e-22 98.2
MsaG017323 AT1G30650.1 46.392 97 47 2 326 417 178 274 1.79e-22 99.8
MsaG017323 AT3G58710.1 48.387 93 32 2 336 417 41 128 2.10e-22 97.1
MsaG017323 AT5G45050.1 33.503 197 110 8 225 417 1058 1237 4.69e-21 97.1
MsaG017323 AT5G45050.4 33.503 197 110 8 225 417 919 1098 5.05e-21 97.1
MsaG017323 AT5G45050.2 33.503 197 110 8 225 417 1030 1209 5.33e-21 97.1
MsaG017323 AT5G52830.1 51.220 82 36 2 336 417 145 222 7.89e-21 94.0
MsaG017323 AT3G04670.2 43.182 132 57 5 254 384 172 286 7.69e-20 90.1
MsaG017323 AT2G23320.2 53.947 76 30 3 309 380 186 260 1.89e-18 85.5
MsaG017323 AT1G29860.1 37.607 117 70 2 303 417 77 192 2.27e-18 85.5
MsaG017323 AT4G39410.1 46.988 83 40 2 338 417 198 279 4.01e-18 85.1
MsaG017323 AT1G69310.4 45.349 86 45 2 336 420 122 206 9.51e-18 84.0
MsaG017323 AT1G69310.2 45.349 86 45 2 336 420 122 206 9.51e-18 84.0
MsaG017323 AT1G69310.1 45.349 86 45 2 336 420 122 206 9.51e-18 84.0
MsaG017323 AT4G18170.1 41.053 95 50 2 323 417 140 228 1.71e-17 83.6
MsaG017323 AT4G04450.2 42.553 94 54 0 324 417 162 255 1.88e-17 84.7
MsaG017323 AT2G47260.1 40.217 92 54 1 326 417 140 230 2.50e-17 83.2
MsaG017323 AT5G07100.1 37.143 105 64 2 315 418 188 291 3.81e-17 82.4
MsaG017323 AT5G26170.1 41.333 75 43 1 347 421 100 173 4.78e-17 79.0
MsaG017323 AT4G04450.1 42.553 94 54 0 324 417 256 349 5.16e-17 84.0
MsaG017323 AT4G23550.1 51.613 62 30 0 357 418 137 198 7.73e-17 81.6
MsaG017323 AT1G62300.1 47.297 74 39 0 344 417 296 369 1.18e-16 82.8
MsaG017323 AT2G44745.1 44.048 84 43 3 337 417 119 201 1.21e-16 79.3
MsaG017323 AT5G07100.2 37.143 105 64 2 315 418 95 198 1.34e-16 79.0
MsaG017323 AT5G07100.4 37.143 105 64 2 315 418 95 198 1.34e-16 79.0
MsaG017323 AT5G07100.5 37.143 105 64 2 315 418 95 198 1.34e-16 79.0
MsaG017323 AT5G07100.3 37.143 105 64 2 315 418 95 198 1.34e-16 79.0
MsaG017323 AT4G22070.4 47.297 74 39 0 344 417 281 354 1.49e-16 82.4
MsaG017323 AT4G22070.3 47.297 74 39 0 344 417 281 354 1.49e-16 82.4
MsaG017323 AT4G22070.2 47.297 74 39 0 344 417 281 354 1.49e-16 82.4
MsaG017323 AT4G22070.1 47.297 74 39 0 344 417 281 354 1.49e-16 82.4
MsaG017323 AT5G49520.1 45.946 74 39 1 344 417 205 277 1.75e-16 81.6
MsaG017323 AT4G31800.2 37.615 109 64 2 346 452 97 203 2.57e-16 79.0
MsaG017323 AT2G37260.3 45.882 85 43 2 338 420 245 328 2.76e-16 80.5
MsaG017323 AT2G37260.2 45.882 85 43 2 338 420 243 326 2.90e-16 80.5
MsaG017323 AT2G37260.1 53.846 65 29 1 356 420 345 408 3.21e-16 80.9
MsaG017323 AT5G46350.1 46.479 71 37 1 347 417 170 239 3.42e-16 79.7
MsaG017323 AT5G15130.2 43.434 99 42 4 321 417 156 242 3.83e-16 80.9
MsaG017323 AT5G15130.1 43.434 99 42 4 321 417 198 284 4.23e-16 80.9
MsaG017323 AT4G31800.1 37.615 109 64 2 346 452 162 268 6.64e-16 78.6
MsaG017323 AT4G26640.5 47.297 74 38 1 344 417 189 261 1.57e-15 78.6
MsaG017323 AT4G26640.6 47.297 74 38 1 344 417 189 261 1.57e-15 78.6
MsaG017323 AT4G26640.4 47.297 74 38 1 344 417 189 261 1.57e-15 78.6
MsaG017323 AT4G26640.3 47.297 74 38 1 344 417 189 261 1.57e-15 78.6
MsaG017323 AT4G26640.1 47.297 74 38 1 344 417 293 365 1.66e-15 79.0
MsaG017323 AT4G26640.7 47.297 74 38 1 344 417 325 397 1.74e-15 79.0
MsaG017323 AT4G26640.2 47.297 74 38 1 344 417 365 437 1.89e-15 79.0
MsaG017323 AT4G01720.1 47.297 74 39 0 344 417 223 296 2.60e-15 78.6
MsaG017323 AT2G04880.2 46.479 71 37 1 347 417 270 339 2.97e-15 78.2
MsaG017323 AT2G04880.1 46.479 71 37 1 347 417 294 363 3.50e-15 78.2
MsaG017323 AT1G64000.1 49.180 61 30 1 357 417 111 170 5.11e-15 73.9
MsaG017323 AT2G38470.1 45.946 74 39 1 344 417 346 418 5.73e-15 77.4
MsaG017323 AT5G41570.1 41.250 80 46 1 338 417 76 154 5.84e-15 73.2
MsaG017323 AT1G66550.2 38.281 128 66 4 290 415 44 160 6.04e-15 74.7
MsaG017323 AT2G03340.1 46.479 71 37 1 347 417 402 471 6.13e-15 77.4
MsaG017323 AT2G03340.1 46.032 63 31 3 356 417 245 305 7.34e-11 64.7
MsaG017323 AT3G01080.2 51.613 62 29 1 356 417 340 400 8.06e-15 76.6
MsaG017323 AT3G01080.2 43.529 85 45 3 357 440 201 283 1.00e-13 73.6
MsaG017323 AT2G40740.1 44.048 84 43 3 336 415 147 230 1.04e-14 75.1
MsaG017323 AT1G13960.1 46.479 71 37 1 347 417 396 465 1.06e-14 76.6
MsaG017323 AT3G01080.1 51.613 62 29 1 356 417 302 362 1.24e-14 75.9
MsaG017323 AT3G01080.1 43.529 85 45 3 357 440 163 245 1.43e-13 72.8
MsaG017323 AT2G40740.3 44.048 84 43 3 336 415 156 239 1.62e-14 74.3
MsaG017323 AT1G13960.2 46.479 71 37 1 347 417 243 312 2.03e-14 74.7
MsaG017323 AT5G56270.1 45.455 77 41 1 341 417 468 543 2.80e-14 75.5
MsaG017323 AT3G01080.3 43.529 85 45 3 357 440 201 283 2.93e-14 73.9
MsaG017323 AT1G68150.1 45.333 75 37 1 343 417 222 292 3.07e-14 74.3
MsaG017323 AT1G18860.1 52.632 57 27 0 361 417 240 296 3.47e-14 75.1
MsaG017323 AT4G26440.1 41.237 97 51 2 341 437 353 443 4.53e-14 74.7
MsaG017323 AT4G26440.1 46.667 60 29 3 359 417 176 233 8.46e-11 64.7
MsaG017323 AT3G62340.1 42.500 80 45 1 338 417 96 174 4.61e-14 72.8
MsaG017323 AT4G30935.1 51.667 60 28 1 358 417 329 387 4.77e-14 74.3
MsaG017323 AT2G25000.2 47.368 57 30 0 361 417 104 160 6.70e-14 71.2
MsaG017323 AT2G25000.4 47.368 57 30 0 361 417 104 160 6.70e-14 71.2
MsaG017323 AT2G25000.3 47.368 57 30 0 361 417 126 182 1.20e-13 71.2
MsaG017323 AT2G25000.1 47.368 57 30 0 361 417 147 203 1.94e-13 70.9
MsaG017323 AT5G64810.1 39.474 76 45 1 347 422 97 171 3.39e-13 68.6
MsaG017323 AT1G66550.1 38.043 92 47 2 334 415 74 165 3.49e-13 69.7
MsaG017323 AT5G45260.1 32.692 156 89 7 274 417 1116 1267 3.53e-13 72.4
MsaG017323 AT1G69310.3 41.860 86 44 3 336 420 122 202 3.92e-13 70.1
MsaG017323 AT1G80840.1 41.667 60 35 0 358 417 144 203 5.96e-13 69.7
MsaG017323 AT5G43290.1 42.857 77 40 2 342 418 99 171 2.68e-12 67.4
MsaG017323 AT1G66560.1 50.847 59 27 1 359 415 102 160 2.90e-12 67.0
MsaG017323 AT2G46130.1 45.161 62 33 1 356 417 26 86 4.23e-12 63.2
MsaG017323 AT1G80590.1 44.304 79 37 2 361 437 86 159 5.52e-12 65.9
MsaG017323 AT1G55600.1 38.961 77 46 1 341 417 288 363 6.45e-12 67.8
MsaG017323 AT2G21900.1 45.614 57 30 1 361 417 110 165 8.83e-12 64.7
MsaG017323 AT1G69810.2 36.364 99 53 5 344 439 129 220 8.94e-12 66.6
MsaG017323 AT1G69810.1 36.364 99 53 5 344 439 187 278 9.79e-12 67.0
MsaG017323 AT2G30250.1 41.096 73 40 2 345 417 315 384 2.71e-11 65.5
MsaG017323 AT3G01970.1 33.036 112 74 1 306 417 11 121 5.52e-11 60.8
MsaG017323 AT5G13080.1 31.897 116 73 3 307 417 9 123 8.31e-11 60.5

Find 167 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTAGATCTAAGGATTT+AGG 0.160577 3:+108048368 None:intergenic
GGATTTAGGGTTAGATTTAA+AGG 0.234283 3:+108048382 None:intergenic
AGGGAGTGGGAGCATGGATT+TGG 0.234912 3:-108047083 MsaT017323.1:CDS
GGGAGTGGGAGCATGGATTT+GGG 0.237711 3:-108047082 MsaT017323.1:CDS
TACGTTACAACTAGTATATT+TGG 0.242016 3:+108047178 None:intergenic
CTTGGGGATTTCTAGATCTA+AGG 0.245293 3:+108048361 None:intergenic
GAAAATGACTTTGAGATTGA+TGG 0.268812 3:-108048753 None:intergenic
AATAATTCTGGTTCAGGTTC+AGG 0.270724 3:-108047103 MsaT017323.1:CDS
GTATGGCTCCAAACCGATTA+AGG 0.275343 3:-108047385 MsaT017323.1:CDS
TTTATTTCAGGGGTTATTAT+AGG 0.286785 3:-108047258 MsaT017323.1:intron
TTTCTAGATCTAAGGATTTA+GGG 0.294531 3:+108048369 None:intergenic
AAAGGTTGGTTATGGCTCTT+AGG 0.300408 3:+108048431 None:intergenic
GGATGTGGTGTTCCCTTAAT+CGG 0.308127 3:+108047372 None:intergenic
TTAGTAAAATCGAGAGTTAA+AGG 0.311607 3:+108048413 None:intergenic
CAGAATTATTCTCTTGCATT+GGG 0.323224 3:+108047116 None:intergenic
CAAGAGAATAATTCTGGTTC+AGG 0.324630 3:-108047109 MsaT017323.1:CDS
AATCACTCCGGCGATGTCTC+TGG 0.334104 3:-108047798 MsaT017323.1:CDS
GTTTGTGGCAGCGGTTGATC+AGG 0.340156 3:+108048515 None:intergenic
GGAAGCGAGCGTGGCCTTTA+CGG 0.340610 3:+108048558 None:intergenic
GCCGGTGTAATGGCCGGTGA+TGG 0.353361 3:+108048046 None:intergenic
ACCCTCACCCCTGCTGTCTC+TGG 0.371044 3:-108047867 MsaT017323.1:CDS
GGAAAACTAAATGTTTCCTT+GGG 0.371745 3:+108048344 None:intergenic
CCAATGCAAGAGAATAATTC+TGG 0.372712 3:-108047115 MsaT017323.1:CDS
CTGAGTAGAGGTGGAGGGAG+TGG 0.376016 3:+108048490 None:intergenic
TGGAAAACTAAATGTTTCCT+TGG 0.386222 3:+108048343 None:intergenic
GAGTATTCATGGAGGAAGTA+TGG 0.388070 3:-108047402 MsaT017323.1:CDS
GGTTGATCAGGGGTTGCATT+TGG 0.390158 3:+108048527 None:intergenic
CCGGTGTAATGGCCGGTGAT+GGG 0.391889 3:+108048047 None:intergenic
CGAGAGTTAAAGGTTGGTTA+TGG 0.401114 3:+108048423 None:intergenic
TGTTTACCACGGGAGATAGA+AGG 0.401450 3:+108047975 None:intergenic
TGAAGTGGTGGTGGTGGAGG+TGG 0.402228 3:+108048467 None:intergenic
AAAATTGTCCAGCTAGGAAA+AGG 0.409042 3:-108047222 MsaT017323.1:CDS
TGGTGTTCCCTTAATCGGTT+TGG 0.409958 3:+108047377 None:intergenic
CCAGAATTATTCTCTTGCAT+TGG 0.415510 3:+108047115 None:intergenic
GGGTTAGATTTAAAGGTGTA+AGG 0.415786 3:+108048389 None:intergenic
ATTTGAAGTGGTGGTGGTGG+AGG 0.418020 3:+108048464 None:intergenic
GGGGTGTTTGAGCTAACCTT+AGG 0.419189 3:-108047061 MsaT017323.1:CDS
GGAGTGGGAGCATGGATTTG+GGG 0.422889 3:-108047081 MsaT017323.1:CDS
CGGTGTAATGGCCGGTGATG+GGG 0.429599 3:+108048048 None:intergenic
TGGAGGTGGCTGAGTAGAGG+TGG 0.430349 3:+108048481 None:intergenic
TACCAGCAGATGAGTATTCA+TGG 0.434617 3:-108047413 MsaT017323.1:CDS
GTGGAGGGAGTGGAAGTTTG+TGG 0.440856 3:+108048500 None:intergenic
CACTGGCTTCGCCGGTGTAA+TGG 0.443886 3:+108048036 None:intergenic
GAGATAGAAGGGGTGAGGAG+TGG 0.448554 3:+108047987 None:intergenic
AACACTGCCGTCGCCGGTGA+TGG 0.454613 3:+108048304 None:intergenic
TAAAATCGAGAGTTAAAGGT+TGG 0.454643 3:+108048417 None:intergenic
AGAGACATTATTAGCGAAGT+TGG 0.457022 3:+108048658 None:intergenic
AGGTGGCTGAGTAGAGGTGG+AGG 0.473021 3:+108048484 None:intergenic
GAGTGGGAGCATGGATTTGG+GGG 0.475482 3:-108047080 MsaT017323.1:CDS
AAAGATGAGTAAGATGTAAG+AGG 0.475709 3:+108047951 None:intergenic
CTCCATGAATACTCATCTGC+TGG 0.476195 3:+108047411 None:intergenic
AGAAATGCCACTGCCAGAAA+AGG 0.476227 3:-108047758 MsaT017323.1:intron
CTTGTTCTAATTCCCTCCTA+AGG 0.478049 3:+108047045 None:intergenic
ATCACTCCGGCGATGTCTCT+GGG 0.478282 3:-108047797 MsaT017323.1:CDS
TGTTTACCACGGGAGACAGC+GGG 0.481273 3:+108048104 None:intergenic
AACGCTTCTATCGCCGGTGA+TGG 0.481498 3:+108047917 None:intergenic
CAGGGGTTGCATTTGGATTG+CGG 0.482525 3:+108048534 None:intergenic
GAGTCCCGTGCATAAGTTCA+AGG 0.483185 3:-108047446 MsaT017323.1:CDS
TTCAATGACGGCGATGAAAG+AGG 0.483268 3:+108047834 None:intergenic
ATAATTCTGGTTCAGGTTCA+GGG 0.485370 3:-108047102 MsaT017323.1:CDS
CGCCGGTGATGGCGGAGGAT+AGG 0.488781 3:+108048315 None:intergenic
TTGGGGCTTGATTATGAAGC+TGG 0.489027 3:+108047134 None:intergenic
TATGGCTCCAAACCGATTAA+GGG 0.491967 3:-108047384 MsaT017323.1:CDS
GGTGTAATGGCCGGTGATGG+GGG 0.493480 3:+108048049 None:intergenic
GGTTTACCGCTGGAGACAGC+AGG 0.494929 3:+108048245 None:intergenic
AGTGTTTCCAATGGCAGACT+TGG 0.497101 3:-108048287 MsaT017323.1:CDS
TGGTGGAGGTGGCTGAGTAG+AGG 0.497676 3:+108048478 None:intergenic
CTGGTTCAGGTTCAGGGAGT+GGG 0.498298 3:-108047096 MsaT017323.1:CDS
GCCTTTACGGTGGAGTAAGT+TGG 0.499407 3:+108048571 None:intergenic
AGTGTCTCCAATGGCAGGCT+AGG 0.503100 3:-108048158 MsaT017323.1:CDS
AGATGGACCAAGTCTGCCAT+TGG 0.504301 3:+108048280 None:intergenic
ATTGGAAACACTGGCTTCGC+CGG 0.506348 3:+108048028 None:intergenic
AGCTAGGAAAAGGGTGGAGA+AGG 0.508533 3:-108047212 MsaT017323.1:CDS
TGAATTTGAAGTGGTGGTGG+TGG 0.508665 3:+108048461 None:intergenic
TCTGGTTCAGGTTCAGGGAG+TGG 0.509914 3:-108047097 MsaT017323.1:CDS
GTGTTTGAGCTAACCTTAGG+AGG 0.513166 3:-108047058 MsaT017323.1:CDS
GATGACATGAATGATGAGTT+AGG 0.513463 3:+108048212 None:intergenic
ATAGAAGCGTTTCCAGCGGC+AGG 0.515749 3:-108047905 MsaT017323.1:CDS
GGCTTCGCCGGTGTAATGGC+CGG 0.516112 3:+108048040 None:intergenic
ATGGTAGATGGCATTGGACA+TGG 0.516657 3:+108048134 None:intergenic
TTTGTGGCAGCGGTTGATCA+GGG 0.520203 3:+108048516 None:intergenic
ACATGGACCTAGCCTGCCAT+TGG 0.522173 3:+108048151 None:intergenic
AGGTTCAGGGAGTGGGAGCA+TGG 0.522327 3:-108047089 MsaT017323.1:CDS
AGATGGACCGATCCTGCCGC+TGG 0.527015 3:+108047893 None:intergenic
AGTGTTTCCAATGGCAGACT+AGG 0.528173 3:-108048017 MsaT017323.1:CDS
CACCAGAGACAGCAGGGGTG+AGG 0.529492 3:+108047865 None:intergenic
GCCGTCGCCGGTGATGGCGG+AGG 0.529845 3:+108048310 None:intergenic
GGAGTGGAAGTTTGTGGCAG+CGG 0.530182 3:+108048506 None:intergenic
TTCATGTCCTCCGCCATCAC+CGG 0.530650 3:-108047930 MsaT017323.1:CDS
ATTGGAAACACTGCCGTCGC+CGG 0.530836 3:+108048298 None:intergenic
ACGGCAGTGTCTCCAATGGC+AGG 0.531858 3:-108048163 MsaT017323.1:CDS
GAAGGGGTGAGGAGTGGAGA+TGG 0.533512 3:+108047993 None:intergenic
GCTGGAAACGCTTCTATCGC+CGG 0.535199 3:+108047911 None:intergenic
ATCATCAGTCACCTTGGATG+TGG 0.536621 3:+108047357 None:intergenic
AGCGTTTCCAGCGGCAGGAT+CGG 0.536745 3:-108047900 MsaT017323.1:CDS
CTCCTATCCTCCGCCATCAC+CGG 0.540008 3:-108048317 MsaT017323.1:CDS
ATGGCGGAGGATAGGAGTGA+TGG 0.540988 3:+108048323 None:intergenic
ACCAGAGACAGCAGGGGTGA+GGG 0.543631 3:+108047866 None:intergenic
TGAAAGAGGTGGTTTACCGC+TGG 0.544509 3:+108048235 None:intergenic
CCCATCACCGGCCATTACAC+CGG 0.545382 3:-108048047 MsaT017323.1:CDS
GTTTACCACGGGAGATAGAA+GGG 0.547446 3:+108047976 None:intergenic
TCTATCGCCGGTGATGGCGG+AGG 0.548144 3:+108047923 None:intergenic
ATTGGAGACACTGCCGTCGC+CGG 0.548673 3:+108048169 None:intergenic
GTGGGGATGGTAGATGGCAT+TGG 0.549661 3:+108048128 None:intergenic
AGATGGTCCTAGTCTGCCAT+TGG 0.550295 3:+108048010 None:intergenic
GGTGGCTGAGTAGAGGTGGA+GGG 0.555049 3:+108048485 None:intergenic
AATGATGAGTTAGGTGAAAG+AGG 0.558263 3:+108048221 None:intergenic
GATTGCGGCGGAAGCGAGCG+TGG 0.558913 3:+108048549 None:intergenic
GGAGGAATTTGAATTTGAAG+TGG 0.561033 3:+108048452 None:intergenic
ACTGCCGTCGCCGGTGATGG+CGG 0.561235 3:+108048307 None:intergenic
GTTTACCGCTGGAGACAGCA+GGG 0.565068 3:+108048246 None:intergenic
GGTTTACCACCAGAGACAGC+AGG 0.565359 3:+108047858 None:intergenic
GGAATTTGAATTTGAAGTGG+TGG 0.567821 3:+108048455 None:intergenic
TCCTCCGCCATCACCGGCGA+CGG 0.570163 3:-108048311 MsaT017323.1:CDS
ATTTGAATTTGAAGTGGTGG+TGG 0.570309 3:+108048458 None:intergenic
GCTTCTATCGCCGGTGATGG+CGG 0.573163 3:+108047920 None:intergenic
TAGTCTGCCATTGGAAACAC+TGG 0.574513 3:+108048019 None:intergenic
GCCGGTGATATCGCGAGCAA+AGG 0.576295 3:+108048187 None:intergenic
CACGGGAGATAGAAGGGGTG+AGG 0.577389 3:+108047982 None:intergenic
GGTTGGTTATGGCTCTTAGG+AGG 0.578662 3:+108048434 None:intergenic
AAATTGTCCAGCTAGGAAAA+GGG 0.578813 3:-108047221 MsaT017323.1:CDS
CTGTTTACCACGGGAGACAG+CGG 0.579258 3:+108048103 None:intergenic
TCCAACTTACTCCACCGTAA+AGG 0.584686 3:-108048572 MsaT017323.1:CDS
GTAAGTTGGATAGTTTCTTG+AGG 0.588388 3:+108048585 None:intergenic
AGCGAGCGTGGCCTTTACGG+TGG 0.596751 3:+108048561 None:intergenic
TTGTGGCAGCGGTTGATCAG+GGG 0.597446 3:+108048517 None:intergenic
CTCACCCCTGCTGTCTCTGG+TGG 0.599307 3:-108047864 MsaT017323.1:CDS
GCAGGGGTGAGGGTATAAGA+TGG 0.600551 3:+108047876 None:intergenic
CAATCCTTGAACTTATGCAC+GGG 0.601760 3:+108047442 None:intergenic
GCCTTTGCTCGCGATATCAC+CGG 0.603472 3:-108048188 MsaT017323.1:CDS
AATGGTGAGATAGAAGAAAG+AGG 0.604400 3:+108048080 None:intergenic
GAGGTCTGAAACAGTGATGT+TGG 0.604494 3:+108048604 None:intergenic
GCAGTGGCATTTCTTAGATG+CGG 0.605629 3:+108047767 None:intergenic
AGAAAGAGGCTGTTTACCAC+GGG 0.608993 3:+108048094 None:intergenic
CTCACCCCTGCTGTCTCCAG+CGG 0.609509 3:-108048251 MsaT017323.1:CDS
GCAGGGGTGAGAATTTGAGA+TGG 0.611517 3:+108048263 None:intergenic
GGCGAAGCCAGTGTTTCCAA+TGG 0.611891 3:-108048026 MsaT017323.1:CDS
TTTACCACGGGAGACAGCGG+GGG 0.612657 3:+108048106 None:intergenic
GCTCGCGATATCACCGGCGA+CGG 0.612885 3:-108048182 MsaT017323.1:CDS
GTGGCATTTCTTAGATGCGG+AGG 0.615532 3:+108047770 None:intergenic
GTTTACCACCAGAGACAGCA+GGG 0.616141 3:+108047859 None:intergenic
TGTAAGAGGCTGTTTACCAC+GGG 0.617465 3:+108047965 None:intergenic
GGCGACGGCAGTGTCTCCAA+TGG 0.618204 3:-108048167 MsaT017323.1:CDS
AGAATTATTCTCTTGCATTG+GGG 0.619176 3:+108047117 None:intergenic
GTTTACCACGGGAGACAGCG+GGG 0.620522 3:+108048105 None:intergenic
GAAAACTAAATGTTTCCTTG+GGG 0.621149 3:+108048345 None:intergenic
GCAATCCTTGAACTTATGCA+CGG 0.621816 3:+108047441 None:intergenic
AAGAAAGAGGCTGTTTACCA+CGG 0.623906 3:+108048093 None:intergenic
ATATTAGAAACTGCCACACA+AGG 0.629159 3:-108048695 MsaT017323.1:CDS
TTAAGGGAACACCACATCCA+AGG 0.631610 3:-108047368 MsaT017323.1:intron
TGTTTGAGCTAACCTTAGGA+GGG 0.631673 3:-108047057 MsaT017323.1:CDS
ATGTAAGAGGCTGTTTACCA+CGG 0.635354 3:+108047964 None:intergenic
GGCGACGGCAGTGTTTCCAA+TGG 0.643275 3:-108048296 MsaT017323.1:CDS
CTCACCCCTTCTATCTCCCG+TGG 0.644664 3:-108047981 MsaT017323.1:CDS
GATGAGTTAGGTGAAAGAGG+TGG 0.645788 3:+108048224 None:intergenic
AAAAGCTGTCACAATCACTC+CGG 0.649448 3:-108047810 MsaT017323.1:CDS
TTGTCCAGCTAGGAAAAGGG+TGG 0.652692 3:-108047218 MsaT017323.1:CDS
GGCGATAGAAGCGTTTCCAG+CGG 0.654727 3:-108047909 MsaT017323.1:CDS
AAGTGAGTTTAAGCCTTGTG+TGG 0.663342 3:+108048682 None:intergenic
CTTAGATCTAGAAATCCCCA+AGG 0.682048 3:-108048360 MsaT017323.1:CDS
GGGTTGCATTTGGATTGCGG+CGG 0.683767 3:+108048537 None:intergenic
AATGACGGCGATGAAAGAGG+CGG 0.684940 3:+108047837 None:intergenic
TTTACCACGGGAGATAGAAG+GGG 0.691554 3:+108047977 None:intergenic
GGGCTTGATTATGAAGCTGG+TGG 0.693764 3:+108047137 None:intergenic
TTTACCGCTGGAGACAGCAG+GGG 0.716826 3:+108048247 None:intergenic
TTTACCACCAGAGACAGCAG+GGG 0.764702 3:+108047860 None:intergenic
CAGCAGATGAGTATTCATGG+AGG 0.765821 3:-108047410 MsaT017323.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 108047051 108048771 108047051 ID=MsaG017323
Chr3 mRNA 108047051 108048771 108047051 ID=MsaT017323.1;Parent=MsaG017323
Chr3 exon 108047051 108047270 108047051 ID=MsaT017323.1.exon3;Parent=MsaT017323.1
Chr3 CDS 108047051 108047270 108047051 ID=cds.MsaT017323.1;Parent=MsaT017323.1
Chr3 exon 108047369 108047494 108047369 ID=MsaT017323.1.exon2;Parent=MsaT017323.1
Chr3 CDS 108047369 108047494 108047369 ID=cds.MsaT017323.1;Parent=MsaT017323.1
Chr3 exon 108047759 108048771 108047759 ID=MsaT017323.1.exon1;Parent=MsaT017323.1
Chr3 CDS 108047759 108048771 108047759 ID=cds.MsaT017323.1;Parent=MsaT017323.1
Gene Sequence

>MsaT017323.1

ATGACTTTGAGATTGATGGATTTTCCAAACATGGATGAGGAAAAAGAAAAGGCAATATTAGAAACTGCCACACAAGGCTTAAACTCACTTGCCAACTTCGCTAATAATGTCTCTCCCCAACCCTCTCTTCAAAACACTGAACTCACCAACATCACTGTTTCAGACCTCAAGAAACTATCCAACTTACTCCACCGTAAAGGCCACGCTCGCTTCCGCCGCAATCCAAATGCAACCCCTGATCAACCGCTGCCACAAACTTCCACTCCCTCCACCTCTACTCAGCCACCTCCACCACCACCACTTCAAATTCAAATTCCTCCTAAGAGCCATAACCAACCTTTAACTCTCGATTTTACTAAACCTTACACCTTTAAATCTAACCCTAAATCCTTAGATCTAGAAATCCCCAAGGAAACATTTAGTTTTCCATCACTCCTATCCTCCGCCATCACCGGCGACGGCAGTGTTTCCAATGGCAGACTTGGTCCATCTCAAATTCTCACCCCTGCTGTCTCCAGCGGTAAACCACCTCTTTCACCTAACTCATCATTCATGTCATCTGCCTTTGCTCGCGATATCACCGGCGACGGCAGTGTCTCCAATGGCAGGCTAGGTCCATGTCCAATGCCATCTACCATCCCCACCCCCGCTGTCTCCCGTGGTAAACAGCCTCTTTCTTCTATCTCACCATTCATGTCCTCCCCCATCACCGGCCATTACACCGGCGAAGCCAGTGTTTCCAATGGCAGACTAGGACCATCTCCACTCCTCACCCCTTCTATCTCCCGTGGTAAACAGCCTCTTACATCTTACTCATCTTTCATGTCCTCCGCCATCACCGGCGATAGAAGCGTTTCCAGCGGCAGGATCGGTCCATCTTATACCCTCACCCCTGCTGTCTCTGGTGGTAAACCGCCTCTTTCATCGCCGTCATTGAAGAAAAGCTGTCACAATCACTCCGGCGATGTCTCTGGGAAAACCTCCGCATCTAAGAAATGCCACTGCCAGAAAAGGAAAAATCGGAACAGGAGACAAGTGAGAGTCCCGTGCATAAGTTCAAGGATTGCTGATATACCAGCAGATGAGTATTCATGGAGGAAGTATGGCTCCAAACCGATTAAGGGAACACCACATCCAAGGGGTTATTATAGGTGCACTATGTCTAAAAATTGTCCAGCTAGGAAAAGGGTGGAGAAGGCGAAAGATGATCCAAATATACTAGTTGTAACGTATGAGTTTGAGCATCGTCACCACCAGCTTCATAATCAAGCCCCAATGCAAGAGAATAATTCTGGTTCAGGTTCAGGGAGTGGGAGCATGGATTTGGGGGTGTTTGAGCTAACCTTAGGAGGGAATTAG

Protein sequence

>MsaT017323.1

MTLRLMDFPNMDEEKEKAILETATQGLNSLANFANNVSPQPSLQNTELTNITVSDLKKLSNLLHRKGHARFRRNPNATPDQPLPQTSTPSTSTQPPPPPPLQIQIPPKSHNQPLTLDFTKPYTFKSNPKSLDLEIPKETFSFPSLLSSAITGDGSVSNGRLGPSQILTPAVSSGKPPLSPNSSFMSSAFARDITGDGSVSNGRLGPCPMPSTIPTPAVSRGKQPLSSISPFMSSPITGHYTGEASVSNGRLGPSPLLTPSISRGKQPLTSYSSFMSSAITGDRSVSSGRIGPSYTLTPAVSGGKPPLSSPSLKKSCHNHSGDVSGKTSASKKCHCQKRKNRNRRQVRVPCISSRIADIPADEYSWRKYGSKPIKGTPHPRGYYRCTMSKNCPARKRVEKAKDDPNILVVTYEFEHRHHQLHNQAPMQENNSGSGSGSGSMDLGVFELTLGGN*