AlfalfaGEDB | MsaG017353

M. sativa ssp. caerulea / MsaG017353

KEGG: -
GO: GO:0001678 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017353	XP_003603580.1	88.806	268	21	4	1	267	1	260	1.47e-166	473

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017353	sp\|Q6H500\|RSBZ4_ORYSJ	55.828	163	69	2	58	218	53	214	5.70e-48	164

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017353	tr\|G7J2W2\|G7J2W2_MEDTR	88.806	268	21	4	1	267	1	260	7.01e-167	473

TFs/TRs:

Gene ID	Type	Classification
MsaG017353	TF	bZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG017353	MsaG023230	0.809716	2.816322e-50	4.776624e-48
MsaG017353	MsaG030723	0.805364	2.339602e-49	3.577055e-47
MsaG017353	MsaG019768	0.819965	1.541649e-52	3.387575e-50
MsaG017353	MsaG024064	0.810230	2.185918e-50	3.753913e-48
MsaG017353	MsaG027624	0.814241	2.940770e-51	5.577228e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017353	MtrunA17_Chr3g0139301	88.806	268	21	4	1	267	1	260	1.35e-170	473
MsaG017353	MtrunA17_Chr1g0147491	58.608	273	87	10	21	272	51	318	1.07e-79	244
MsaG017353	MtrunA17_Chr3g0139571	82.432	74	13	0	127	200	1	74	8.14e-31	110
MsaG017353	MtrunA17_Chr1g0190761	49.306	144	66	4	98	238	177	316	1.60e-23	99.0
MsaG017353	MtrunA17_Chr7g0274141	50.725	138	61	3	78	215	150	280	1.48e-22	95.9
MsaG017353	MtrunA17_Chr1g0155551	32.203	118	80	0	100	217	2	119	3.63e-13	65.9
MsaG017353	MtrunA17_Chr4g0035414	35.484	93	60	0	115	207	17	109	3.16e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017353	AT5G24800.1	49.730	185	81	5	73	251	62	240	1.49e-41	144
MsaG017353	AT5G28770.2	48.905	137	64	3	102	238	129	259	7.71e-21	90.5
MsaG017353	AT5G28770.1	48.905	137	64	3	102	238	122	252	7.83e-21	90.5
MsaG017353	AT5G28770.3	53.000	100	45	1	102	201	129	226	1.10e-16	78.2
MsaG017353	AT4G02640.3	47.917	96	47	1	126	221	221	313	1.22e-13	70.9
MsaG017353	AT4G02640.2	47.917	96	47	1	126	221	221	313	1.25e-13	70.9
MsaG017353	AT4G02640.4	47.917	96	47	1	126	221	215	307	1.34e-13	70.9
MsaG017353	AT4G02640.1	47.917	96	47	1	126	221	215	307	1.35e-13	70.9
MsaG017353	AT3G54620.1	46.429	84	45	0	126	209	229	312	2.69e-11	63.9

Find 63 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATTCTCAGCCATCTATTTA+TGG	0.124761	3:+108318642	MsaT017353.1:CDS
TTTGGTTTATTAGCTGAAAC+TGG	0.195300	3:-108318775	None:intergenic
TTTGACAGAAATACCTTCTA+TGG	0.244115	3:-108318909	None:intergenic
GCGTGCTGGTCGAATCTTGC+TGG	0.252896	3:+108319664	MsaT017353.1:CDS
ATATTATTCTCTTTGTTGTT+TGG	0.273240	3:-108318793	None:intergenic
AGTTTACCGGTAGGAGAGTT+TGG	0.295352	3:-108315529	None:intergenic
TCTTGCTGGGTTTGGAAACT+TGG	0.304648	3:+108319678	MsaT017353.1:CDS
AACACTATACAAACAGTTTA+CGG	0.327856	3:+108319278	MsaT017353.1:CDS
AGCACTGATGGTGGAATGTT+TGG	0.379902	3:-108318613	None:intergenic
TGGTCGAATCTTGCTGGGTT+TGG	0.387926	3:+108319670	MsaT017353.1:CDS
AATGTTTGGGAGTGAAGTTT+TGG	0.394976	3:-108318599	None:intergenic
ATTTCCCTGCAGGACATTGA+TGG	0.400011	3:-108319610	None:intergenic
ATGTGGCATGCGGCGAATAC+TGG	0.408973	3:-108319577	None:intergenic
TGTCGATTTACATCATTGTA+AGG	0.409759	3:-108319706	None:intergenic
TGAATCTCGATTACGAGTTT+CGG	0.410788	3:+108315450	MsaT017353.1:CDS
TTGATATGAAACGCCATAGA+AGG	0.425277	3:+108318896	MsaT017353.1:CDS
GGTGAAGTTAGCTGAGGATA+TGG	0.427027	3:+108319464	MsaT017353.1:intron
TTTGTCTGAACTTGAGTCTC+AGG	0.431765	3:+108319065	MsaT017353.1:CDS
CGTGCTGGTCGAATCTTGCT+GGG	0.432249	3:+108319665	MsaT017353.1:CDS
AACCGCAACACCACCGTATG+AGG	0.448822	3:-108319640	None:intergenic
TCCGACGAGGATAATGAATC+AGG	0.453955	3:+108318847	MsaT017353.1:CDS
GTATCCAAGTCTTGCCGATA+CGG	0.463283	3:+108315472	MsaT017353.1:CDS
CAGCCATCTATTTATGGCAC+TGG	0.467277	3:+108318648	MsaT017353.1:CDS
CTTGCTGGGTTTGGAAACTT+GGG	0.468603	3:+108319679	MsaT017353.1:CDS
GCCAACCATCAATGTCCTGC+AGG	0.476677	3:+108319605	MsaT017353.1:CDS
ATACCAGTGCCATAAATAGA+TGG	0.477311	3:-108318651	None:intergenic
TGGTGTTGCGGTTGGCGTGC+TGG	0.478909	3:+108319650	MsaT017353.1:CDS
ACAAAGAGAATAATATCAAA+GGG	0.493368	3:+108318800	MsaT017353.1:CDS
CCCTGCAGGACATTGATGGT+TGG	0.501779	3:-108319606	None:intergenic
CGCTTTCCAAACTCTCCTAC+CGG	0.524112	3:+108315523	MsaT017353.1:CDS
GCCTCCGTATCGGCAAGACT+TGG	0.526307	3:-108315476	None:intergenic
TTGGTTTATTAGCTGAAACT+GGG	0.535446	3:-108318774	None:intergenic
AGGCACTATTATTTCCCTGC+AGG	0.536074	3:-108319620	None:intergenic
GCACTGATGGTGGAATGTTT+GGG	0.539183	3:-108318612	None:intergenic
TGTAGAAGCTTTGAGAGCTA+AGG	0.540256	3:+108319356	MsaT017353.1:CDS
AACAAAGAGAATAATATCAA+AGG	0.546304	3:+108318799	MsaT017353.1:CDS
GGAAATAATAGTGCCTCATA+CGG	0.548614	3:+108319627	MsaT017353.1:CDS
GATACGGAGGCATTCATGAC+CGG	0.550151	3:+108315488	MsaT017353.1:CDS
ACCTGATTCATTATCCTCGT+CGG	0.562154	3:-108318848	None:intergenic
AGAATCAATAGTAGCACTGA+TGG	0.570342	3:-108318625	None:intergenic
GCGAGTCAGCCAAGAGGTCA+AGG	0.571020	3:+108319025	MsaT017353.1:CDS
AAACTGATTGTTTAGTGATG+TGG	0.571542	3:-108319505	None:intergenic
CCGGCGAGCGATGGCAACAA+CGG	0.577221	3:+108315406	None:intergenic
ATCAATAGTAGCACTGATGG+TGG	0.581341	3:-108318622	None:intergenic
GATTCATTATCCTCGTCGGA+TGG	0.582930	3:-108318844	None:intergenic
GAAAGCGGCGGAGCAAACTC+CGG	0.584176	3:-108315507	None:intergenic
GGTCATGAATGCCTCCGTAT+CGG	0.589824	3:-108315486	None:intergenic
TCATACGGTGGTGTTGCGGT+TGG	0.590129	3:+108319642	MsaT017353.1:CDS
AATATCAAAGGGACATCAAG+TGG	0.598499	3:+108318811	MsaT017353.1:CDS
TACTATTCAACAATTTCATG+AGG	0.600013	3:+108319302	MsaT017353.1:CDS
TGCCTCATACGGTGGTGTTG+CGG	0.602335	3:+108319638	MsaT017353.1:CDS
AATAATAGTGCCTCATACGG+TGG	0.620063	3:+108319630	MsaT017353.1:CDS
TCCAAGTCTTGCCGATACGG+AGG	0.642233	3:+108315475	MsaT017353.1:CDS
CCAACCATCAATGTCCTGCA+GGG	0.644784	3:+108319606	MsaT017353.1:CDS
TAGGAGAGTTTGGAAAGCGG+CGG	0.671217	3:-108315519	None:intergenic
ATAATAGGTGAAGTTAGCTG+AGG	0.671237	3:+108319458	MsaT017353.1:intron
AGTCAGCCAAGAGGTCAAGG+TGG	0.684615	3:+108319028	MsaT017353.1:CDS
CGGTAGGAGAGTTTGGAAAG+CGG	0.687279	3:-108315522	None:intergenic
CTGGTAGTCATGTTGAGTTG+TGG	0.702154	3:-108319558	None:intergenic
TTCATCTGATCCATCCGACG+AGG	0.710432	3:+108318834	MsaT017353.1:CDS
CTAATTGCGAGTCAGCCAAG+AGG	0.711883	3:+108319019	MsaT017353.1:CDS
TTGGCGAAACATGTGGCATG+CGG	0.727060	3:-108319587	None:intergenic
TTGATGGTTGGCGAAACATG+TGG	0.736785	3:-108319594	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	108315416	108319716	108315416	ID=MsaG017353
Chr3	mRNA	108315416	108319716	108315416	ID=MsaT017353.1;Parent=MsaG017353
Chr3	exon	108315416	108315544	108315416	ID=MsaT017353.1.exon1;Parent=MsaT017353.1
Chr3	CDS	108315416	108315544	108315416	ID=cds.MsaT017353.1;Parent=MsaT017353.1
Chr3	exon	108318555	108318669	108318555	ID=MsaT017353.1.exon2;Parent=MsaT017353.1
Chr3	CDS	108318555	108318669	108318555	ID=cds.MsaT017353.1;Parent=MsaT017353.1
Chr3	exon	108318767	108318917	108318767	ID=MsaT017353.1.exon3;Parent=MsaT017353.1
Chr3	CDS	108318767	108318917	108318767	ID=cds.MsaT017353.1;Parent=MsaT017353.1
Chr3	exon	108319011	108319086	108319011	ID=MsaT017353.1.exon4;Parent=MsaT017353.1
Chr3	CDS	108319011	108319086	108319011	ID=cds.MsaT017353.1;Parent=MsaT017353.1
Chr3	exon	108319252	108319377	108319252	ID=MsaT017353.1.exon5;Parent=MsaT017353.1
Chr3	CDS	108319252	108319377	108319252	ID=cds.MsaT017353.1;Parent=MsaT017353.1
Chr3	exon	108319465	108319716	108319465	ID=MsaT017353.1.exon6;Parent=MsaT017353.1
Chr3	CDS	108319465	108319716	108319465	ID=cds.MsaT017353.1;Parent=MsaT017353.1

Gene Sequence

>MsaT017353.1

ATGGCAACAACGGAATCTGATCTTGATGAGTTTTTGAATCTCGATTACGAGTTTCGGTATCCAAGTCTTGCCGATACGGAGGCATTCATGACCGGAGTTTGCTCCGCCGCTTTCCAAACTCTCCTACCGGATGTTGTGAGTTCATTTTCAACTTGTGGTGGACTAACAGACTCCCAAAACTTCACTCCCAAACATTCCACCATCAGTGCTACTATTGATTCTCAGCCATCTATTTATGGCACTGTTGGAAGCCCAGTTTCAGCTAATAAACCAAACAACAAAGAGAATAATATCAAAGGGACATCAAGTGGTTCATCTGATCCATCCGACGAGGATAATGAATCAGGTCATTGTGAACAAATTACAAATAAACTTGATATGAAACGCCATAGAAGAAGGGTTTCTAATTGCGAGTCAGCCAAGAGGTCAAGGTGGAGAAAACAAGCACATTTGTCTGAACTTGAGTCTCAGGTTGAAAAACTGCAACTGGAAAACGCAACACTATACAAACAGTTTACGGATACTATTCAACAATTTCATGAGGCTGATACAAATAACCGAGTGCTAAAATCAGATGTAGAAGCTTTGAGAGCTAAGGTGAAGTTAGCTGAGGATATGGTCACTAGAAGTTCTTTCACCACATCACTAAACAATCAGTTTCTTCATAATCAACGTCAAATGAGCACAACACCACAACTCAACATGACTACCAGTATTCGCCGCATGCCACATGTTTCGCCAACCATCAATGTCCTGCAGGGAAATAATAGTGCCTCATACGGTGGTGTTGCGGTTGGCGTGCTGGTCGAATCTTGCTGGGTTTGGAAACTTGGGCGTGCCTTACAATGA

Protein sequence

>MsaT017353.1

MATTESDLDEFLNLDYEFRYPSLADTEAFMTGVCSAAFQTLLPDVVSSFSTCGGLTDSQNFTPKHSTISATIDSQPSIYGTVGSPVSANKPNNKENNIKGTSSGSSDPSDEDNESGHCEQITNKLDMKRHRRRVSNCESAKRSRWRKQAHLSELESQVEKLQLENATLYKQFTDTIQQFHEADTNNRVLKSDVEALRAKVKLAEDMVTRSSFTTSLNNQFLHNQRQMSTTPQLNMTTSIRRMPHVSPTINVLQGNNSASYGGVAVGVLVESCWVWKLGRALQ*