AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG017378


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG017378 MtrunA17_Chr3g0139591 64.634 82 20 2 1 73 1 82 5.23e-30 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 17 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCTCATCTGCTGAAAA+AGG 0.250913 3:+108596233 None:intergenic
CCCTCACACTACTCTGTTCA+AGG 0.330582 3:-108596130 MsaT017378.1:intron
TTTATATCTGTGAGATGAAT+CGG 0.405381 3:+108596158 None:intergenic
TTTGATTACTGGATAAATCA+AGG 0.409871 3:+108595863 None:intergenic
TTTGTCTGAACTTGAGTCTC+AGG 0.438416 3:-108595435 MsaT017378.1:intron
GCAAGTCAGCCAGGAGATCA+AGG 0.509998 3:-108595475 MsaT017378.1:CDS
TTGATTACTGGATAAATCAA+GGG 0.516883 3:+108595864 None:intergenic
AGAACAAGACTGTCGTGGAA+TGG 0.542339 3:-108596213 MsaT017378.1:CDS
TGATGAATCAGTCTCCTCTA+CGG 0.543409 3:-108595890 MsaT017378.1:CDS
TTTCGAATCGCAAGTCAGCC+AGG 0.548619 3:-108595484 MsaT017378.1:CDS
AACAATGACTGGAGTTCAAG+AGG 0.577971 3:-108596267 None:intergenic
GCTGCTCGGGAAACAATGAC+TGG 0.584445 3:-108596278 None:intergenic
GAGAAAGAACAAGACTGTCG+TGG 0.606913 3:-108596218 MsaT017378.1:CDS
CCTTGAACAGAGTAGTGTGA+GGG 0.630037 3:+108596130 None:intergenic
ACCTTGAACAGAGTAGTGTG+AGG 0.659209 3:+108596129 None:intergenic
TAAATCAAGGGAAACCGTAG+AGG 0.659390 3:+108595876 None:intergenic
AGTCAGCCAGGAGATCAAGG+CGG 0.755309 3:-108595472 MsaT017378.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 108595365 108596285 108595365 ID=MsaG017378
Chr3 mRNA 108595365 108596285 108595365 ID=MsaT017378.1;Parent=MsaG017378
Chr3 exon 108595365 108595385 108595365 ID=MsaT017378.1.exon4;Parent=MsaT017378.1
Chr3 CDS 108595365 108595385 108595365 ID=cds.MsaT017378.1;Parent=MsaT017378.1
Chr3 exon 108595436 108595507 108595436 ID=MsaT017378.1.exon3;Parent=MsaT017378.1
Chr3 CDS 108595436 108595507 108595436 ID=cds.MsaT017378.1;Parent=MsaT017378.1
Chr3 exon 108595872 108595932 108595872 ID=MsaT017378.1.exon2;Parent=MsaT017378.1
Chr3 CDS 108595872 108595932 108595872 ID=cds.MsaT017378.1;Parent=MsaT017378.1
Chr3 exon 108596131 108596285 108596131 ID=MsaT017378.1.exon1;Parent=MsaT017378.1
Chr3 CDS 108596131 108596285 108596131 ID=cds.MsaT017378.1;Parent=MsaT017378.1
Gene Sequence

>MsaT017378.1

ATGACTGGAGTTCAAGAGGACCGTATTTCACCTTTTTCAGCAGATGAGAAAGAACAAGACTGTCGTGGAATGGATATGCTTACAGCCGCTAAAAGACAAAAGCATCCGATTCATCTCACAGATATAAAATTTTCCCTCACACTACTCTGTTCAAGGCATTGCTTGCTTTGTGTTCTGATGAATCAGTCTCCTCTACGGTTTCCCTTGATTTATCCAGTTTCGAATCGCAAGTCAGCCAGGAGATCAAGGCGGAGAAAACGAGCGCATTTGTCTGAACTTGAGTCTCAGGTTAGACAATTTGATATCTAA

Protein sequence

>MsaT017378.1

MTGVQEDRISPFSADEKEQDCRGMDMLTAAKRQKHPIHLTDIKFSLTLLCSRHCLLCVLMNQSPLRFPLIYPVSNRKSARRSRRRKRAHLSELESQVRQFDI*