Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017400 | XP_024634048.1 | 95.805 | 596 | 24 | 1 | 1 | 596 | 1 | 595 | 0.0 | 1136 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017400 | sp|Q9SZD1|TCX5_ARATH | 40.433 | 554 | 243 | 18 | 13 | 533 | 24 | 523 | 3.94e-111 | 348 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017400 | tr|A0A072V2F6|A0A072V2F6_MEDTR | 91.639 | 598 | 46 | 4 | 1 | 596 | 1 | 596 | 0.0 | 1090 |
Gene ID | Type | Classification |
---|---|---|
MsaG017400 | TF | CPP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000243 | MsaG017400 | 0.816732 | 8.256088e-52 | 1.667830e-49 |
MsaG000247 | MsaG017400 | 0.803196 | 6.584100e-49 | 9.573392e-47 |
MsaG000400 | MsaG017400 | 0.803455 | 5.821462e-49 | 8.515137e-47 |
MsaG000952 | MsaG017400 | 0.820894 | 9.457746e-53 | 2.129889e-50 |
MsaG001132 | MsaG017400 | 0.813268 | 4.805223e-51 | 8.893394e-49 |
MsaG001867 | MsaG017400 | 0.805417 | 2.280836e-49 | 3.491441e-47 |
MsaG001855 | MsaG017400 | 0.816776 | 8.068892e-52 | 1.631902e-49 |
MsaG002146 | MsaG017400 | 0.822126 | 4.928679e-53 | 1.146840e-50 |
MsaG002564 | MsaG017400 | 0.801975 | 1.172085e-48 | 1.657181e-46 |
MsaG002965 | MsaG017400 | 0.819908 | 1.587895e-52 | 3.483848e-50 |
MsaG003589 | MsaG017400 | 0.803172 | 6.658807e-49 | 9.676541e-47 |
MsaG003599 | MsaG017400 | 0.816964 | 7.326904e-52 | 1.489040e-49 |
MsaG004030 | MsaG017400 | 0.807613 | 7.888983e-50 | 1.271911e-47 |
MsaG004297 | MsaG017400 | 0.802243 | 1.033017e-48 | 1.469473e-46 |
MsaG004748 | MsaG017400 | 0.805058 | 2.709420e-49 | 4.113247e-47 |
MsaG004759 | MsaG017400 | 0.803213 | 6.530075e-49 | 9.498532e-47 |
MsaG004923 | MsaG017400 | 0.803882 | 4.750816e-49 | 7.018187e-47 |
MsaG004912 | MsaG017400 | 0.810641 | 1.783471e-50 | 3.093655e-48 |
MsaG005408 | MsaG017400 | 0.805210 | 2.518455e-49 | 3.836864e-47 |
MsaG005525 | MsaG017400 | 0.801227 | 1.666366e-48 | 2.316244e-46 |
MsaG006233 | MsaG017400 | 0.800458 | 2.387249e-48 | 3.261320e-46 |
MsaG006380 | MsaG017400 | 0.817552 | 5.409981e-52 | 1.116236e-49 |
MsaG006920 | MsaG017400 | 0.804088 | 4.307172e-49 | 6.393624e-47 |
MsaG006934 | MsaG017400 | 0.811927 | 9.411797e-51 | 1.684887e-48 |
MsaG007418 | MsaG017400 | 0.826740 | 4.093721e-54 | 1.080694e-51 |
MsaG007668 | MsaG017400 | 0.806758 | 1.194425e-49 | 1.887158e-47 |
MsaG007719 | MsaG017400 | 0.808598 | 4.877851e-50 | 8.052958e-48 |
MsaG007841 | MsaG017400 | 0.822284 | 4.529395e-53 | 1.058442e-50 |
MsaG008404 | MsaG017400 | 0.807821 | 7.127012e-50 | 1.154856e-47 |
MsaG008428 | MsaG017400 | 0.829009 | 1.172610e-54 | 3.298682e-52 |
MsaG008603 | MsaG017400 | 0.820810 | 9.887736e-53 | 2.221681e-50 |
MsaG009235 | MsaG017400 | 0.816816 | 7.906251e-52 | 1.600618e-49 |
MsaG009803 | MsaG017400 | 0.811490 | 1.170168e-50 | 2.072395e-48 |
MsaG009881 | MsaG017400 | 0.803700 | 5.181632e-49 | 7.622541e-47 |
MsaG011023 | MsaG017400 | 0.811240 | 1.324880e-50 | 2.332102e-48 |
MsaG011024 | MsaG017400 | 0.852286 | 9.772626e-61 | 5.734399e-58 |
MsaG011125 | MsaG017400 | 0.808998 | 4.009900e-50 | 6.684256e-48 |
MsaG011557 | MsaG017400 | 0.813920 | 3.458921e-51 | 6.507452e-49 |
MsaG012297 | MsaG017400 | 0.805641 | 2.048197e-49 | 3.151848e-47 |
MsaG012576 | MsaG017400 | 0.808234 | 5.826149e-50 | 9.534866e-48 |
MsaG013310 | MsaG017400 | 0.807926 | 6.773060e-50 | 1.100304e-47 |
MsaG013324 | MsaG017400 | 0.800244 | 2.638117e-48 | 3.586544e-46 |
MsaG013369 | MsaG017400 | 0.808202 | 5.918079e-50 | 9.677857e-48 |
MsaG014366 | MsaG017400 | 0.814300 | 2.854498e-51 | 5.421629e-49 |
MsaG016366 | MsaG017400 | 0.806202 | 1.562866e-49 | 2.437071e-47 |
MsaG016655 | MsaG017400 | 0.812374 | 7.525242e-51 | 1.362089e-48 |
MsaG017003 | MsaG017400 | 0.819109 | 2.411446e-52 | 5.180763e-50 |
MsaG017114 | MsaG017400 | 0.805015 | 2.765955e-49 | 4.194909e-47 |
MsaG017400 | MsaG017551 | 0.808710 | 4.617251e-50 | 7.643792e-48 |
MsaG017400 | MsaG017683 | 0.800585 | 2.250105e-48 | 3.082772e-46 |
MsaG017400 | MsaG018466 | 0.814686 | 2.346308e-51 | 4.499840e-49 |
MsaG017400 | MsaG018494 | 0.802201 | 1.053741e-48 | 1.497516e-46 |
MsaG017400 | MsaG018524 | 0.825889 | 6.514007e-54 | 1.679447e-51 |
MsaG017400 | MsaG018634 | 0.808652 | 4.749251e-50 | 7.851222e-48 |
MsaG017400 | MsaG018659 | 0.802302 | 1.004779e-48 | 1.431288e-46 |
MsaG017400 | MsaG018689 | 0.812709 | 6.362464e-51 | 1.161258e-48 |
MsaG017400 | MsaG018998 | 0.812104 | 8.613325e-51 | 1.548576e-48 |
MsaG017400 | MsaG019776 | 0.807777 | 7.281453e-50 | 1.178645e-47 |
MsaG017400 | MsaG020532 | 0.825675 | 7.318405e-54 | 1.875530e-51 |
MsaG017400 | MsaG020695 | 0.811316 | 1.275621e-50 | 2.249609e-48 |
MsaG017400 | MsaG020954 | 0.803175 | 6.648630e-49 | 9.662524e-47 |
MsaG017400 | MsaG021301 | 0.806652 | 1.257363e-49 | 1.981615e-47 |
MsaG017400 | MsaG023134 | 0.809330 | 3.405738e-50 | 5.722436e-48 |
MsaG017400 | MsaG023537 | 0.805064 | 2.701585e-49 | 4.101910e-47 |
MsaG017400 | MsaG023688 | 0.827812 | 2.273664e-54 | 6.184955e-52 |
MsaG017400 | MsaG023691 | 0.818697 | 2.988836e-52 | 6.351859e-50 |
MsaG017400 | MsaG024258 | 0.804744 | 3.149009e-49 | 4.745831e-47 |
MsaG017400 | MsaG024283 | 0.811075 | 1.438134e-50 | 2.521246e-48 |
MsaG017400 | MsaG024414 | 0.808677 | 4.692980e-50 | 7.762898e-48 |
MsaG017400 | MsaG024535 | 0.808739 | 4.552408e-50 | 7.541686e-48 |
MsaG017400 | MsaG025496 | 0.812413 | 7.381304e-51 | 1.337318e-48 |
MsaG017400 | MsaG025503 | 0.821389 | 7.284707e-53 | 1.662123e-50 |
MsaG017400 | MsaG026584 | 0.806787 | 1.177754e-49 | 1.862044e-47 |
MsaG017400 | MsaG026637 | 0.832999 | 1.242736e-55 | 3.922834e-53 |
MsaG017400 | MsaG028107 | 0.829598 | 8.448459e-55 | 2.417177e-52 |
MsaG017400 | MsaG028738 | 0.864126 | 3.031068e-64 | 2.765556e-61 |
MsaG017400 | MsaG029038 | 0.814361 | 2.767144e-51 | 5.263866e-49 |
MsaG017400 | MsaG029041 | 0.833340 | 1.023163e-55 | 3.262282e-53 |
MsaG017400 | MsaG029515 | 0.814947 | 2.054959e-51 | 3.967133e-49 |
MsaG017400 | MsaG029839 | 0.817860 | 4.614577e-52 | 9.596904e-50 |
MsaG017400 | MsaG030479 | 0.812702 | 6.385013e-51 | 1.165183e-48 |
MsaG017400 | MsaG030474 | 0.815100 | 1.901548e-51 | 3.685088e-49 |
MsaG017400 | MsaG031241 | 0.804909 | 2.909854e-49 | 4.402222e-47 |
MsaG017400 | MsaG031414 | 0.811795 | 1.005256e-50 | 1.793687e-48 |
MsaG017400 | MsaG031440 | 0.809843 | 2.645437e-50 | 4.500724e-48 |
MsaG017400 | MsaG031584 | 0.835071 | 3.784814e-56 | 1.270487e-53 |
MsaG017400 | MsaG031997 | 0.801886 | 1.222567e-48 | 1.725079e-46 |
MsaG017400 | MsaG032180 | 0.815537 | 1.522180e-51 | 2.982742e-49 |
MsaG017400 | MsaG032426 | 0.819730 | 1.743694e-52 | 3.807378e-50 |
MsaG017400 | MsaG034066 | 0.804804 | 3.060024e-49 | 4.618142e-47 |
MsaG017400 | MsaG034225 | 0.815699 | 1.401034e-51 | 2.756730e-49 |
MsaG017400 | MsaG034644 | 0.813560 | 4.147683e-51 | 7.733056e-49 |
MsaG017400 | MsaG035457 | 0.817344 | 6.024427e-52 | 1.236360e-49 |
MsaG017400 | MsaG035534 | 0.805864 | 1.839639e-49 | 2.845716e-47 |
MsaG017400 | MsaG036150 | 0.825047 | 1.028643e-53 | 2.590949e-51 |
MsaG017400 | MsaG040099 | 0.812265 | 7.947482e-51 | 1.434593e-48 |
MsaG017400 | MsaG040264 | 0.832013 | 2.176514e-55 | 6.676326e-53 |
MsaG017400 | MsaG040342 | 0.800496 | 2.345501e-48 | 3.206965e-46 |
MsaG017400 | MsaG040720 | 0.811687 | 1.060795e-50 | 1.887798e-48 |
MsaG017400 | MsaG042162 | 0.801052 | 1.808390e-48 | 2.503726e-46 |
MsaG017400 | MsaG044372 | 0.811758 | 1.024038e-50 | 1.825522e-48 |
MsaG017400 | MsaG044576 | 0.820335 | 1.269600e-52 | 2.817301e-50 |
MsaG017400 | MsaG044852 | 0.826036 | 6.014312e-54 | 1.556938e-51 |
MsaG017400 | MsaG046611 | 0.811433 | 1.203468e-50 | 2.128435e-48 |
MsaG017400 | MsaG046981 | 0.801647 | 1.368142e-48 | 1.919966e-46 |
MsaG017400 | MsaG047018 | 0.812601 | 6.718724e-51 | 1.222961e-48 |
MsaG017400 | MsaG000003 | 0.804328 | 3.840844e-49 | 5.733094e-47 |
MsaG017400 | MsaG006154 | 0.807510 | 8.293843e-50 | 1.333923e-47 |
MsaG017400 | MsaG008205 | 0.805750 | 1.942992e-49 | 2.997596e-47 |
MsaG017400 | MsaG013196 | 0.800958 | 1.889928e-48 | 2.611094e-46 |
MsaG017400 | MsaG012533 | 0.802496 | 9.168561e-49 | 1.311842e-46 |
MsaG017400 | MsaG013042 | 0.807236 | 9.474558e-50 | 1.513840e-47 |
MsaG017400 | MsaG019851 | 0.812864 | 5.887377e-51 | 1.078687e-48 |
MsaG017400 | MsaG021117 | 0.813974 | 3.365798e-51 | 6.340708e-49 |
MsaG017400 | MsaG020214 | 0.806315 | 1.479915e-49 | 2.313906e-47 |
MsaG017400 | MsaG019703 | 0.823932 | 1.876697e-53 | 4.585368e-51 |
MsaG017400 | MsaG023053 | 0.804305 | 3.883688e-49 | 5.793955e-47 |
MsaG017400 | MsaG027456 | 0.801251 | 1.647482e-48 | 2.291252e-46 |
MsaG017400 | MsaG026953 | 0.813832 | 3.616328e-51 | 6.788677e-49 |
MsaG017400 | MsaG026809 | 0.800502 | 2.339339e-48 | 3.198939e-46 |
MsaG017400 | MsaG030637 | 0.812465 | 7.188979e-51 | 1.304198e-48 |
MsaG017400 | MsaG034688 | 0.807046 | 1.038809e-49 | 1.652403e-47 |
MsaG017400 | MsaG032305 | 0.801634 | 1.376021e-48 | 1.930487e-46 |
MsaG017400 | MsaG037042 | 0.805915 | 1.794298e-49 | 2.778958e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017400 | MtrunA17_Chr3g0139951 | 97.000 | 400 | 12 | 0 | 1 | 400 | 1 | 400 | 0.0 | 806 |
MsaG017400 | MtrunA17_Chr6g0485811 | 45.376 | 465 | 225 | 10 | 125 | 570 | 107 | 561 | 7.44e-117 | 360 |
MsaG017400 | MtrunA17_Chr8g0390351 | 44.662 | 459 | 228 | 11 | 109 | 549 | 44 | 494 | 4.37e-114 | 352 |
MsaG017400 | MtrunA17_Chr3g0139941 | 78.125 | 192 | 9 | 2 | 402 | 593 | 1 | 159 | 6.66e-96 | 290 |
MsaG017400 | MtrunA17_Chr1g0149101 | 44.604 | 139 | 73 | 4 | 148 | 282 | 498 | 636 | 1.09e-28 | 121 |
MsaG017400 | MtrunA17_Chr5g0394661 | 48.800 | 125 | 60 | 4 | 148 | 269 | 488 | 611 | 4.10e-27 | 116 |
MsaG017400 | MtrunA17_Chr1g0205031 | 36.719 | 128 | 68 | 5 | 143 | 267 | 409 | 526 | 6.65e-14 | 74.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017400 | AT4G29000.1 | 40.433 | 554 | 243 | 18 | 13 | 533 | 24 | 523 | 4.00e-112 | 348 |
MsaG017400 | AT2G20110.3 | 40.883 | 521 | 247 | 14 | 84 | 590 | 66 | 539 | 9.66e-106 | 329 |
MsaG017400 | AT2G20110.1 | 41.352 | 503 | 240 | 13 | 84 | 572 | 66 | 527 | 8.30e-105 | 328 |
MsaG017400 | AT2G20110.2 | 40.588 | 510 | 241 | 13 | 84 | 572 | 66 | 534 | 7.51e-103 | 323 |
MsaG017400 | AT5G25790.1 | 36.722 | 482 | 248 | 15 | 49 | 524 | 11 | 441 | 8.10e-83 | 267 |
MsaG017400 | AT5G25790.2 | 35.714 | 504 | 267 | 15 | 49 | 546 | 11 | 463 | 1.69e-82 | 268 |
MsaG017400 | AT5G25790.3 | 36.515 | 482 | 245 | 16 | 49 | 524 | 11 | 437 | 4.08e-82 | 265 |
MsaG017400 | AT3G16160.1 | 44.737 | 152 | 80 | 2 | 116 | 266 | 34 | 182 | 3.13e-32 | 128 |
MsaG017400 | AT3G22760.2 | 41.401 | 157 | 87 | 3 | 126 | 280 | 186 | 339 | 1.50e-28 | 119 |
MsaG017400 | AT3G22760.1 | 41.401 | 157 | 87 | 3 | 126 | 280 | 309 | 462 | 2.41e-28 | 120 |
MsaG017400 | AT4G14770.1 | 46.774 | 124 | 64 | 2 | 148 | 269 | 375 | 498 | 4.68e-28 | 119 |
MsaG017400 | AT4G14770.2 | 46.774 | 124 | 64 | 2 | 148 | 269 | 355 | 478 | 6.93e-28 | 119 |
MsaG017400 | AT4G14770.3 | 46.774 | 124 | 64 | 2 | 148 | 269 | 356 | 479 | 6.95e-28 | 119 |
MsaG017400 | AT3G22780.1 | 42.029 | 138 | 78 | 2 | 148 | 283 | 401 | 538 | 1.07e-27 | 118 |
MsaG017400 | AT3G04850.1 | 45.968 | 124 | 65 | 2 | 148 | 269 | 453 | 576 | 5.20e-27 | 116 |
Find 126 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACATCAATTTAAGTGTTTC+TGG | 0.101248 | 3:+108766133 | None:intergenic |
GCTAAAGTACTTACAATTTA+AGG | 0.107021 | 3:+108767980 | None:intergenic |
TTCTCTTCTTGGGTGTTATA+TGG | 0.169921 | 3:+108767280 | None:intergenic |
ATTATTATTGGTAGCATTAA+AGG | 0.183098 | 3:-108765938 | MsaT017400.1:intron |
CATTCCAATTGCCTCCTTTC+GGG | 0.215507 | 3:+108767786 | None:intergenic |
ATTTGTCTTTGCAGCTTCTT+TGG | 0.243681 | 3:+108766611 | None:intergenic |
GCAACTAATGCTGCCATTAA+TGG | 0.244194 | 3:-108767336 | MsaT017400.1:CDS |
TCAAAATAAAGCAGGGTTAA+AGG | 0.248253 | 3:-108768052 | MsaT017400.1:CDS |
TACTTACAATTTAAGGCATT+TGG | 0.284828 | 3:+108767987 | None:intergenic |
TCTCTTCTTGGGTGTTATAT+GGG | 0.286069 | 3:+108767281 | None:intergenic |
AAAATCACATACCTGAATTT+AGG | 0.297536 | 3:+108766788 | None:intergenic |
CTTGGTGAACTGATTATTAT+TGG | 0.298905 | 3:-108765950 | MsaT017400.1:CDS |
TCATTCCAATTGCCTCCTTT+CGG | 0.299863 | 3:+108767785 | None:intergenic |
AAGTCCAACTGCTCCATTAA+TGG | 0.310344 | 3:+108767323 | None:intergenic |
TTGATATTGACATTCATAAT+AGG | 0.314713 | 3:-108766165 | MsaT017400.1:CDS |
GTGTCTGAAATTCAATTAAT+AGG | 0.329611 | 3:-108767537 | MsaT017400.1:CDS |
GGCTTATCCTGACCAAGTTC+AGG | 0.337443 | 3:-108765979 | MsaT017400.1:CDS |
TCGGAAATTTGCGCGGCAAT+TGG | 0.338947 | 3:-108769582 | MsaT017400.1:CDS |
TCCTCCGGCGCAAATGCATT+TGG | 0.349311 | 3:-108769453 | MsaT017400.1:CDS |
AATAGAAGCTTCATATTTCT+CGG | 0.353823 | 3:+108766276 | None:intergenic |
CTACTAACCATAGAAACTTC+TGG | 0.357925 | 3:+108767706 | None:intergenic |
TTTGCATGATTCTCCGAAAC+AGG | 0.382385 | 3:+108766208 | None:intergenic |
ACCAAGTTCAGGGATGTTCT+TGG | 0.382968 | 3:-108765968 | MsaT017400.1:CDS |
AACCTCTTCACCGGAAGCTT+TGG | 0.384541 | 3:+108769281 | None:intergenic |
AGATGTTGCCAAGCCTGTTT+CGG | 0.392240 | 3:-108766221 | MsaT017400.1:CDS |
TTCGGTAATGGTTCTGCAAA+TGG | 0.394963 | 3:-108766088 | MsaT017400.1:CDS |
AACACTCACAATACTTCTTA+AGG | 0.401328 | 3:+108767478 | None:intergenic |
TTAATAGGAAGGCACAATAA+AGG | 0.404131 | 3:-108767522 | MsaT017400.1:CDS |
TAATTTCAAGACCTAAATTC+AGG | 0.410173 | 3:-108766799 | MsaT017400.1:intron |
GCGTCGGTGGCGACAATGTC+AGG | 0.412454 | 3:+108769528 | None:intergenic |
TGTTTCCACGGCCGTCTCAC+TGG | 0.412786 | 3:+108769419 | None:intergenic |
GGACTTGGACCCTCCATCTC+TGG | 0.418333 | 3:-108767306 | MsaT017400.1:CDS |
ATTAATGGAGCAGTTGGACT+TGG | 0.419842 | 3:-108767321 | MsaT017400.1:CDS |
GCTACCTATGCAAGAACTAA+TGG | 0.420530 | 3:-108764253 | MsaT017400.1:CDS |
TAAATTGATGTGTGATGAAC+AGG | 0.421391 | 3:-108766122 | MsaT017400.1:CDS |
AGCCACTGGGATGGAGCAAT+TGG | 0.435821 | 3:+108764273 | None:intergenic |
GTACTCCACACCAAAGCTTC+CGG | 0.447922 | 3:-108769291 | MsaT017400.1:CDS |
TACTGTGAGTGCTATGCAGC+TGG | 0.448205 | 3:-108767868 | MsaT017400.1:CDS |
AAAGGAAGCTGACAGGGATA+AGG | 0.448296 | 3:+108766844 | None:intergenic |
TTCAAATTTCCAGAAATGAG+AGG | 0.459036 | 3:-108766322 | MsaT017400.1:intron |
CATGACTGCTCAACACCAAC+AGG | 0.463692 | 3:-108767208 | MsaT017400.1:intron |
ACCAAGAACATCCCTGAACT+TGG | 0.469962 | 3:+108765967 | None:intergenic |
TGATAGTGGTGCTGAAACTA+AGG | 0.471033 | 3:-108764320 | MsaT017400.1:CDS |
TCTTTCGTTGAGGTTGCTCA+TGG | 0.471035 | 3:-108764215 | MsaT017400.1:CDS |
CACTGCTGTTTATGCAGAGC+AGG | 0.471249 | 3:-108766005 | MsaT017400.1:CDS |
CTGTTTATGCAGAGCAGGAA+AGG | 0.476553 | 3:-108766000 | MsaT017400.1:CDS |
AAGGAAGCTGACAGGGATAA+GGG | 0.478405 | 3:+108766845 | None:intergenic |
TCACAGCCTCAAAATAAAGC+AGG | 0.479128 | 3:-108768060 | MsaT017400.1:CDS |
GCTGCCCGAAAGGAGGCAAT+TGG | 0.479529 | 3:-108767790 | MsaT017400.1:CDS |
GTTCTTGCATAGGTAGCCAC+TGG | 0.479534 | 3:+108764259 | None:intergenic |
GATAAGGGAGATGAAGCTAT+AGG | 0.479560 | 3:+108766860 | None:intergenic |
GAACATCCCTGAACTTGGTC+AGG | 0.480468 | 3:+108765972 | None:intergenic |
GATTGAAAATGCGGCATCAC+CGG | 0.492928 | 3:+108769353 | None:intergenic |
GGAGAAGAGCGAAACGACGC+TGG | 0.493971 | 3:-108769615 | MsaT017400.1:CDS |
CGGAAACAAAGGAAGCTGAC+AGG | 0.494375 | 3:+108766837 | None:intergenic |
TGTTATATGGGTTCCAGAGA+TGG | 0.499612 | 3:+108767293 | None:intergenic |
TGAGGCTGTGATCTAGGGCT+AGG | 0.501431 | 3:+108768072 | None:intergenic |
CGACGCTGGATTTAGCTAAT+CGG | 0.509373 | 3:-108769601 | MsaT017400.1:CDS |
AAAGGATGTCACTGCAAGAA+AGG | 0.510127 | 3:-108767504 | MsaT017400.1:CDS |
TTGGATTTCGCCGCCGCATG+TGG | 0.510164 | 3:-108769563 | MsaT017400.1:CDS |
ATCGAAACTAACTGCGGGCG+CGG | 0.513160 | 3:+108769329 | None:intergenic |
TCAAATTTCCAGAAATGAGA+GGG | 0.516415 | 3:-108766321 | MsaT017400.1:intron |
CTGAAATTCAATTAATAGGA+AGG | 0.519135 | 3:-108767533 | MsaT017400.1:CDS |
GCTTATCCTGACCAAGTTCA+GGG | 0.520596 | 3:-108765978 | MsaT017400.1:CDS |
CAAAAGTCTTCCAACTCTGA+TGG | 0.520619 | 3:-108766031 | MsaT017400.1:CDS |
ATGATTCTCCGAAACAGGCT+TGG | 0.524373 | 3:+108766213 | None:intergenic |
AAATGCATTTGCGCCGGAGG+AGG | 0.526333 | 3:+108769455 | None:intergenic |
GCTGCCATTAATGGAGCAGT+TGG | 0.529615 | 3:-108767327 | MsaT017400.1:CDS |
CAGAGCAGAGGACGTTGGCA+TGG | 0.529760 | 3:+108767454 | None:intergenic |
AGTCACCAGTGAGACGGCCG+TGG | 0.538539 | 3:-108769424 | MsaT017400.1:CDS |
CACCAAAGCTTCCGGTGAAG+AGG | 0.538599 | 3:-108769283 | MsaT017400.1:CDS |
GAAGCTGCAAAGACAAATGC+AGG | 0.539292 | 3:-108766606 | MsaT017400.1:intron |
TGTGACAGTGACTGCGGCGT+CGG | 0.541888 | 3:+108769512 | None:intergenic |
TGTGGTGGTGATTGTTTCCA+CGG | 0.542299 | 3:+108769407 | None:intergenic |
AGCGCTTGAAACCTCTTCAC+CGG | 0.544016 | 3:+108769272 | None:intergenic |
TTCATGTTGAAGGTCTGTGT+TGG | 0.547492 | 3:-108766691 | MsaT017400.1:intron |
GGAAGCTTTGGTGTGGAGTA+CGG | 0.547715 | 3:+108769293 | None:intergenic |
TCCAAATGCATTTGCGCCGG+AGG | 0.550391 | 3:+108769452 | None:intergenic |
CTCTGCTGCTGCCACTGTGG+TGG | 0.557444 | 3:+108769392 | None:intergenic |
ACCGTCGGATTTGCCTCCTC+CGG | 0.560178 | 3:-108769468 | MsaT017400.1:CDS |
GGAGGCAAATCCGACGGTGT+CGG | 0.562332 | 3:+108769473 | None:intergenic |
ATAGGCAGTGTCGGAAACAA+AGG | 0.562595 | 3:+108766826 | None:intergenic |
GAACAATGAGGCTGCCCGAA+AGG | 0.567258 | 3:-108767800 | MsaT017400.1:CDS |
GAATCATCGAAACTAACTGC+GGG | 0.568372 | 3:+108769324 | None:intergenic |
TGCATAGGTAGCCACTGGGA+TGG | 0.569627 | 3:+108764264 | None:intergenic |
ATGTCCATTAGTTCTTGCAT+AGG | 0.570734 | 3:+108764249 | None:intergenic |
GATTTCGCCGCCGCATGTGG+AGG | 0.572850 | 3:-108769560 | MsaT017400.1:CDS |
AAATGAGAGGGAAAGCTGCT+AGG | 0.574833 | 3:-108766309 | MsaT017400.1:CDS |
CGGTGTCGGAGGTCGTAGAA+TGG | 0.576418 | 3:+108769487 | None:intergenic |
AGCAGTGTATCCATCAGAGT+TGG | 0.576661 | 3:+108766021 | None:intergenic |
TAGTCTAGTTCAAATCAGAC+AGG | 0.581100 | 3:-108767358 | MsaT017400.1:CDS |
TTAAGTGTTTCTGGTGACAG+TGG | 0.589606 | 3:+108766142 | None:intergenic |
GGAGGCAATTGGAATGACAC+TGG | 0.589713 | 3:-108767779 | MsaT017400.1:CDS |
GACAGTGACTGCGGCGTCGG+TGG | 0.593114 | 3:+108769515 | None:intergenic |
AAATCCAAATGCATTTGCGC+CGG | 0.594109 | 3:+108769449 | None:intergenic |
CTTCACCGGAAGCTTTGGTG+TGG | 0.594505 | 3:+108769286 | None:intergenic |
CAATGAGGCTGCCCGAAAGG+AGG | 0.594923 | 3:-108767797 | MsaT017400.1:CDS |
CACAGCCTCAAAATAAAGCA+GGG | 0.602704 | 3:-108768059 | MsaT017400.1:CDS |
GGAAACAAAGGAAGCTGACA+GGG | 0.605542 | 3:+108766838 | None:intergenic |
GGCAAATCCGACGGTGTCGG+AGG | 0.608094 | 3:+108769476 | None:intergenic |
TATATGGGTTCCAGAGATGG+AGG | 0.609649 | 3:+108767296 | None:intergenic |
GCAGCTGGGATCTATTGTGA+TGG | 0.610068 | 3:-108767853 | MsaT017400.1:CDS |
GAGAACGTCACAGTCTCCGC+CGG | 0.610187 | 3:-108769372 | MsaT017400.1:CDS |
GGGCGCGGTGATTGAAAATG+CGG | 0.613912 | 3:+108769344 | None:intergenic |
ACTGTGAGTGCTATGCAGCT+GGG | 0.620605 | 3:-108767867 | MsaT017400.1:CDS |
TGATGTGTGATGAACAGGAT+GGG | 0.620967 | 3:-108766117 | MsaT017400.1:CDS |
ATACTACTGATCTTTCGTTG+AGG | 0.630168 | 3:-108764225 | MsaT017400.1:CDS |
TTCTTGCATAGGTAGCCACT+GGG | 0.635007 | 3:+108764260 | None:intergenic |
TCATAATAATCTGAACAATG+AGG | 0.638704 | 3:-108767812 | MsaT017400.1:CDS |
GATAGTGGTGCTGAAACTAA+GGG | 0.640097 | 3:-108764319 | MsaT017400.1:CDS |
TGAAAATGCGGCATCACCGG+CGG | 0.641386 | 3:+108769356 | None:intergenic |
GGCGACAATGTCAGGTACGA+CGG | 0.643457 | 3:+108769536 | None:intergenic |
GCCGGAGGAGGCAAATCCGA+CGG | 0.645977 | 3:+108769467 | None:intergenic |
TCACTCACAGATCAAACTGT+CGG | 0.650466 | 3:-108767231 | MsaT017400.1:CDS |
ATATGGGTTCCAGAGATGGA+GGG | 0.670217 | 3:+108767297 | None:intergenic |
TCTACGACCTCCGACACCGT+CGG | 0.672076 | 3:-108769483 | MsaT017400.1:CDS |
TTGATGTGTGATGAACAGGA+TGG | 0.672796 | 3:-108766118 | MsaT017400.1:CDS |
GTTCTCTGCTGCTGCCACTG+TGG | 0.675511 | 3:+108769389 | None:intergenic |
TAGCTAATCGGAAATTTGCG+CGG | 0.681451 | 3:-108769589 | MsaT017400.1:CDS |
CGACGGACCTCCACATGCGG+CGG | 0.682146 | 3:+108769553 | None:intergenic |
GTACGACGGACCTCCACATG+CGG | 0.684282 | 3:+108769550 | None:intergenic |
TGCCAATTGCTCCATCCCAG+TGG | 0.687073 | 3:-108764275 | MsaT017400.1:CDS |
ATAGTGGTGCTGAAACTAAG+GGG | 0.690161 | 3:-108764318 | MsaT017400.1:CDS |
TGAATCATCGAAACTAACTG+CGG | 0.719757 | 3:+108769323 | None:intergenic |
ATGGTTTGTGACAGTGACTG+CGG | 0.730603 | 3:+108769506 | None:intergenic |
GGAAACAATCACCACCACAG+TGG | 0.761756 | 3:-108769403 | MsaT017400.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 108764210 | 108769639 | 108764210 | ID=MsaG017400 |
Chr3 | mRNA | 108764210 | 108769639 | 108764210 | ID=MsaT017400.1;Parent=MsaG017400 |
Chr3 | exon | 108764210 | 108764406 | 108764210 | ID=MsaT017400.1.exon8;Parent=MsaT017400.1 |
Chr3 | CDS | 108764210 | 108764406 | 108764210 | ID=cds.MsaT017400.1;Parent=MsaT017400.1 |
Chr3 | exon | 108765939 | 108766331 | 108765939 | ID=MsaT017400.1.exon7;Parent=MsaT017400.1 |
Chr3 | CDS | 108765939 | 108766331 | 108765939 | ID=cds.MsaT017400.1;Parent=MsaT017400.1 |
Chr3 | exon | 108766607 | 108766701 | 108766607 | ID=MsaT017400.1.exon6;Parent=MsaT017400.1 |
Chr3 | CDS | 108766607 | 108766701 | 108766607 | ID=cds.MsaT017400.1;Parent=MsaT017400.1 |
Chr3 | exon | 108766800 | 108766891 | 108766800 | ID=MsaT017400.1.exon5;Parent=MsaT017400.1 |
Chr3 | CDS | 108766800 | 108766891 | 108766800 | ID=cds.MsaT017400.1;Parent=MsaT017400.1 |
Chr3 | exon | 108767209 | 108767565 | 108767209 | ID=MsaT017400.1.exon4;Parent=MsaT017400.1 |
Chr3 | CDS | 108767209 | 108767565 | 108767209 | ID=cds.MsaT017400.1;Parent=MsaT017400.1 |
Chr3 | exon | 108767714 | 108767891 | 108767714 | ID=MsaT017400.1.exon3;Parent=MsaT017400.1 |
Chr3 | CDS | 108767714 | 108767891 | 108767714 | ID=cds.MsaT017400.1;Parent=MsaT017400.1 |
Chr3 | exon | 108767994 | 108768104 | 108767994 | ID=MsaT017400.1.exon2;Parent=MsaT017400.1 |
Chr3 | CDS | 108767994 | 108768104 | 108767994 | ID=cds.MsaT017400.1;Parent=MsaT017400.1 |
Chr3 | exon | 108769272 | 108769639 | 108769272 | ID=MsaT017400.1.exon1;Parent=MsaT017400.1 |
Chr3 | CDS | 108769272 | 108769639 | 108769272 | ID=cds.MsaT017400.1;Parent=MsaT017400.1 |
Gene Sequence |
Protein sequence |