AlfalfaGEDB | MsaG017400

M. sativa ssp. caerulea / MsaG017400

KEGG: K21776
GO: -
PFAM: PF03638.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017400	XP_024634048.1	95.805	596	24	1	1	596	1	595	0.0	1136

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017400	sp\|Q9SZD1\|TCX5_ARATH	40.433	554	243	18	13	533	24	523	3.94e-111	348

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017400	tr\|A0A072V2F6\|A0A072V2F6_MEDTR	91.639	598	46	4	1	596	1	596	0.0	1090

TFs/TRs:

Gene ID	Type	Classification
MsaG017400	TF	CPP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000243	MsaG017400	0.816732	8.256088e-52	1.667830e-49
MsaG000247	MsaG017400	0.803196	6.584100e-49	9.573392e-47
MsaG000400	MsaG017400	0.803455	5.821462e-49	8.515137e-47
MsaG000952	MsaG017400	0.820894	9.457746e-53	2.129889e-50
MsaG001132	MsaG017400	0.813268	4.805223e-51	8.893394e-49
MsaG001867	MsaG017400	0.805417	2.280836e-49	3.491441e-47
MsaG001855	MsaG017400	0.816776	8.068892e-52	1.631902e-49
MsaG002146	MsaG017400	0.822126	4.928679e-53	1.146840e-50
MsaG002564	MsaG017400	0.801975	1.172085e-48	1.657181e-46
MsaG002965	MsaG017400	0.819908	1.587895e-52	3.483848e-50
MsaG003589	MsaG017400	0.803172	6.658807e-49	9.676541e-47
MsaG003599	MsaG017400	0.816964	7.326904e-52	1.489040e-49
MsaG004030	MsaG017400	0.807613	7.888983e-50	1.271911e-47
MsaG004297	MsaG017400	0.802243	1.033017e-48	1.469473e-46
MsaG004748	MsaG017400	0.805058	2.709420e-49	4.113247e-47
MsaG004759	MsaG017400	0.803213	6.530075e-49	9.498532e-47
MsaG004923	MsaG017400	0.803882	4.750816e-49	7.018187e-47
MsaG004912	MsaG017400	0.810641	1.783471e-50	3.093655e-48
MsaG005408	MsaG017400	0.805210	2.518455e-49	3.836864e-47
MsaG005525	MsaG017400	0.801227	1.666366e-48	2.316244e-46
MsaG006233	MsaG017400	0.800458	2.387249e-48	3.261320e-46
MsaG006380	MsaG017400	0.817552	5.409981e-52	1.116236e-49
MsaG006920	MsaG017400	0.804088	4.307172e-49	6.393624e-47
MsaG006934	MsaG017400	0.811927	9.411797e-51	1.684887e-48
MsaG007418	MsaG017400	0.826740	4.093721e-54	1.080694e-51
MsaG007668	MsaG017400	0.806758	1.194425e-49	1.887158e-47
MsaG007719	MsaG017400	0.808598	4.877851e-50	8.052958e-48
MsaG007841	MsaG017400	0.822284	4.529395e-53	1.058442e-50
MsaG008404	MsaG017400	0.807821	7.127012e-50	1.154856e-47
MsaG008428	MsaG017400	0.829009	1.172610e-54	3.298682e-52
MsaG008603	MsaG017400	0.820810	9.887736e-53	2.221681e-50
MsaG009235	MsaG017400	0.816816	7.906251e-52	1.600618e-49
MsaG009803	MsaG017400	0.811490	1.170168e-50	2.072395e-48
MsaG009881	MsaG017400	0.803700	5.181632e-49	7.622541e-47
MsaG011023	MsaG017400	0.811240	1.324880e-50	2.332102e-48
MsaG011024	MsaG017400	0.852286	9.772626e-61	5.734399e-58
MsaG011125	MsaG017400	0.808998	4.009900e-50	6.684256e-48
MsaG011557	MsaG017400	0.813920	3.458921e-51	6.507452e-49
MsaG012297	MsaG017400	0.805641	2.048197e-49	3.151848e-47
MsaG012576	MsaG017400	0.808234	5.826149e-50	9.534866e-48
MsaG013310	MsaG017400	0.807926	6.773060e-50	1.100304e-47
MsaG013324	MsaG017400	0.800244	2.638117e-48	3.586544e-46
MsaG013369	MsaG017400	0.808202	5.918079e-50	9.677857e-48
MsaG014366	MsaG017400	0.814300	2.854498e-51	5.421629e-49
MsaG016366	MsaG017400	0.806202	1.562866e-49	2.437071e-47
MsaG016655	MsaG017400	0.812374	7.525242e-51	1.362089e-48
MsaG017003	MsaG017400	0.819109	2.411446e-52	5.180763e-50
MsaG017114	MsaG017400	0.805015	2.765955e-49	4.194909e-47
MsaG017400	MsaG017551	0.808710	4.617251e-50	7.643792e-48
MsaG017400	MsaG017683	0.800585	2.250105e-48	3.082772e-46
MsaG017400	MsaG018466	0.814686	2.346308e-51	4.499840e-49
MsaG017400	MsaG018494	0.802201	1.053741e-48	1.497516e-46
MsaG017400	MsaG018524	0.825889	6.514007e-54	1.679447e-51
MsaG017400	MsaG018634	0.808652	4.749251e-50	7.851222e-48
MsaG017400	MsaG018659	0.802302	1.004779e-48	1.431288e-46
MsaG017400	MsaG018689	0.812709	6.362464e-51	1.161258e-48
MsaG017400	MsaG018998	0.812104	8.613325e-51	1.548576e-48
MsaG017400	MsaG019776	0.807777	7.281453e-50	1.178645e-47
MsaG017400	MsaG020532	0.825675	7.318405e-54	1.875530e-51
MsaG017400	MsaG020695	0.811316	1.275621e-50	2.249609e-48
MsaG017400	MsaG020954	0.803175	6.648630e-49	9.662524e-47
MsaG017400	MsaG021301	0.806652	1.257363e-49	1.981615e-47
MsaG017400	MsaG023134	0.809330	3.405738e-50	5.722436e-48
MsaG017400	MsaG023537	0.805064	2.701585e-49	4.101910e-47
MsaG017400	MsaG023688	0.827812	2.273664e-54	6.184955e-52
MsaG017400	MsaG023691	0.818697	2.988836e-52	6.351859e-50
MsaG017400	MsaG024258	0.804744	3.149009e-49	4.745831e-47
MsaG017400	MsaG024283	0.811075	1.438134e-50	2.521246e-48
MsaG017400	MsaG024414	0.808677	4.692980e-50	7.762898e-48
MsaG017400	MsaG024535	0.808739	4.552408e-50	7.541686e-48
MsaG017400	MsaG025496	0.812413	7.381304e-51	1.337318e-48
MsaG017400	MsaG025503	0.821389	7.284707e-53	1.662123e-50
MsaG017400	MsaG026584	0.806787	1.177754e-49	1.862044e-47
MsaG017400	MsaG026637	0.832999	1.242736e-55	3.922834e-53
MsaG017400	MsaG028107	0.829598	8.448459e-55	2.417177e-52
MsaG017400	MsaG028738	0.864126	3.031068e-64	2.765556e-61
MsaG017400	MsaG029038	0.814361	2.767144e-51	5.263866e-49
MsaG017400	MsaG029041	0.833340	1.023163e-55	3.262282e-53
MsaG017400	MsaG029515	0.814947	2.054959e-51	3.967133e-49
MsaG017400	MsaG029839	0.817860	4.614577e-52	9.596904e-50
MsaG017400	MsaG030479	0.812702	6.385013e-51	1.165183e-48
MsaG017400	MsaG030474	0.815100	1.901548e-51	3.685088e-49
MsaG017400	MsaG031241	0.804909	2.909854e-49	4.402222e-47
MsaG017400	MsaG031414	0.811795	1.005256e-50	1.793687e-48
MsaG017400	MsaG031440	0.809843	2.645437e-50	4.500724e-48
MsaG017400	MsaG031584	0.835071	3.784814e-56	1.270487e-53
MsaG017400	MsaG031997	0.801886	1.222567e-48	1.725079e-46
MsaG017400	MsaG032180	0.815537	1.522180e-51	2.982742e-49
MsaG017400	MsaG032426	0.819730	1.743694e-52	3.807378e-50
MsaG017400	MsaG034066	0.804804	3.060024e-49	4.618142e-47
MsaG017400	MsaG034225	0.815699	1.401034e-51	2.756730e-49
MsaG017400	MsaG034644	0.813560	4.147683e-51	7.733056e-49
MsaG017400	MsaG035457	0.817344	6.024427e-52	1.236360e-49
MsaG017400	MsaG035534	0.805864	1.839639e-49	2.845716e-47
MsaG017400	MsaG036150	0.825047	1.028643e-53	2.590949e-51
MsaG017400	MsaG040099	0.812265	7.947482e-51	1.434593e-48
MsaG017400	MsaG040264	0.832013	2.176514e-55	6.676326e-53
MsaG017400	MsaG040342	0.800496	2.345501e-48	3.206965e-46
MsaG017400	MsaG040720	0.811687	1.060795e-50	1.887798e-48
MsaG017400	MsaG042162	0.801052	1.808390e-48	2.503726e-46
MsaG017400	MsaG044372	0.811758	1.024038e-50	1.825522e-48
MsaG017400	MsaG044576	0.820335	1.269600e-52	2.817301e-50
MsaG017400	MsaG044852	0.826036	6.014312e-54	1.556938e-51
MsaG017400	MsaG046611	0.811433	1.203468e-50	2.128435e-48
MsaG017400	MsaG046981	0.801647	1.368142e-48	1.919966e-46
MsaG017400	MsaG047018	0.812601	6.718724e-51	1.222961e-48
MsaG017400	MsaG000003	0.804328	3.840844e-49	5.733094e-47
MsaG017400	MsaG006154	0.807510	8.293843e-50	1.333923e-47
MsaG017400	MsaG008205	0.805750	1.942992e-49	2.997596e-47
MsaG017400	MsaG013196	0.800958	1.889928e-48	2.611094e-46
MsaG017400	MsaG012533	0.802496	9.168561e-49	1.311842e-46
MsaG017400	MsaG013042	0.807236	9.474558e-50	1.513840e-47
MsaG017400	MsaG019851	0.812864	5.887377e-51	1.078687e-48
MsaG017400	MsaG021117	0.813974	3.365798e-51	6.340708e-49
MsaG017400	MsaG020214	0.806315	1.479915e-49	2.313906e-47
MsaG017400	MsaG019703	0.823932	1.876697e-53	4.585368e-51
MsaG017400	MsaG023053	0.804305	3.883688e-49	5.793955e-47
MsaG017400	MsaG027456	0.801251	1.647482e-48	2.291252e-46
MsaG017400	MsaG026953	0.813832	3.616328e-51	6.788677e-49
MsaG017400	MsaG026809	0.800502	2.339339e-48	3.198939e-46
MsaG017400	MsaG030637	0.812465	7.188979e-51	1.304198e-48
MsaG017400	MsaG034688	0.807046	1.038809e-49	1.652403e-47
MsaG017400	MsaG032305	0.801634	1.376021e-48	1.930487e-46
MsaG017400	MsaG037042	0.805915	1.794298e-49	2.778958e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017400	MtrunA17_Chr3g0139951	97.000	400	12	0	1	400	1	400	0.0	806
MsaG017400	MtrunA17_Chr6g0485811	45.376	465	225	10	125	570	107	561	7.44e-117	360
MsaG017400	MtrunA17_Chr8g0390351	44.662	459	228	11	109	549	44	494	4.37e-114	352
MsaG017400	MtrunA17_Chr3g0139941	78.125	192	9	2	402	593	1	159	6.66e-96	290
MsaG017400	MtrunA17_Chr1g0149101	44.604	139	73	4	148	282	498	636	1.09e-28	121
MsaG017400	MtrunA17_Chr5g0394661	48.800	125	60	4	148	269	488	611	4.10e-27	116
MsaG017400	MtrunA17_Chr1g0205031	36.719	128	68	5	143	267	409	526	6.65e-14	74.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017400	AT4G29000.1	40.433	554	243	18	13	533	24	523	4.00e-112	348
MsaG017400	AT2G20110.3	40.883	521	247	14	84	590	66	539	9.66e-106	329
MsaG017400	AT2G20110.1	41.352	503	240	13	84	572	66	527	8.30e-105	328
MsaG017400	AT2G20110.2	40.588	510	241	13	84	572	66	534	7.51e-103	323
MsaG017400	AT5G25790.1	36.722	482	248	15	49	524	11	441	8.10e-83	267
MsaG017400	AT5G25790.2	35.714	504	267	15	49	546	11	463	1.69e-82	268
MsaG017400	AT5G25790.3	36.515	482	245	16	49	524	11	437	4.08e-82	265
MsaG017400	AT3G16160.1	44.737	152	80	2	116	266	34	182	3.13e-32	128
MsaG017400	AT3G22760.2	41.401	157	87	3	126	280	186	339	1.50e-28	119
MsaG017400	AT3G22760.1	41.401	157	87	3	126	280	309	462	2.41e-28	120
MsaG017400	AT4G14770.1	46.774	124	64	2	148	269	375	498	4.68e-28	119
MsaG017400	AT4G14770.2	46.774	124	64	2	148	269	355	478	6.93e-28	119
MsaG017400	AT4G14770.3	46.774	124	64	2	148	269	356	479	6.95e-28	119
MsaG017400	AT3G22780.1	42.029	138	78	2	148	283	401	538	1.07e-27	118
MsaG017400	AT3G04850.1	45.968	124	65	2	148	269	453	576	5.20e-27	116

Find 126 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CACATCAATTTAAGTGTTTC+TGG	0.101248	3:+108766133	None:intergenic
GCTAAAGTACTTACAATTTA+AGG	0.107021	3:+108767980	None:intergenic
TTCTCTTCTTGGGTGTTATA+TGG	0.169921	3:+108767280	None:intergenic
ATTATTATTGGTAGCATTAA+AGG	0.183098	3:-108765938	MsaT017400.1:intron
CATTCCAATTGCCTCCTTTC+GGG	0.215507	3:+108767786	None:intergenic
ATTTGTCTTTGCAGCTTCTT+TGG	0.243681	3:+108766611	None:intergenic
GCAACTAATGCTGCCATTAA+TGG	0.244194	3:-108767336	MsaT017400.1:CDS
TCAAAATAAAGCAGGGTTAA+AGG	0.248253	3:-108768052	MsaT017400.1:CDS
TACTTACAATTTAAGGCATT+TGG	0.284828	3:+108767987	None:intergenic
TCTCTTCTTGGGTGTTATAT+GGG	0.286069	3:+108767281	None:intergenic
AAAATCACATACCTGAATTT+AGG	0.297536	3:+108766788	None:intergenic
CTTGGTGAACTGATTATTAT+TGG	0.298905	3:-108765950	MsaT017400.1:CDS
TCATTCCAATTGCCTCCTTT+CGG	0.299863	3:+108767785	None:intergenic
AAGTCCAACTGCTCCATTAA+TGG	0.310344	3:+108767323	None:intergenic
TTGATATTGACATTCATAAT+AGG	0.314713	3:-108766165	MsaT017400.1:CDS
GTGTCTGAAATTCAATTAAT+AGG	0.329611	3:-108767537	MsaT017400.1:CDS
GGCTTATCCTGACCAAGTTC+AGG	0.337443	3:-108765979	MsaT017400.1:CDS
TCGGAAATTTGCGCGGCAAT+TGG	0.338947	3:-108769582	MsaT017400.1:CDS
TCCTCCGGCGCAAATGCATT+TGG	0.349311	3:-108769453	MsaT017400.1:CDS
AATAGAAGCTTCATATTTCT+CGG	0.353823	3:+108766276	None:intergenic
CTACTAACCATAGAAACTTC+TGG	0.357925	3:+108767706	None:intergenic
TTTGCATGATTCTCCGAAAC+AGG	0.382385	3:+108766208	None:intergenic
ACCAAGTTCAGGGATGTTCT+TGG	0.382968	3:-108765968	MsaT017400.1:CDS
AACCTCTTCACCGGAAGCTT+TGG	0.384541	3:+108769281	None:intergenic
AGATGTTGCCAAGCCTGTTT+CGG	0.392240	3:-108766221	MsaT017400.1:CDS
TTCGGTAATGGTTCTGCAAA+TGG	0.394963	3:-108766088	MsaT017400.1:CDS
AACACTCACAATACTTCTTA+AGG	0.401328	3:+108767478	None:intergenic
TTAATAGGAAGGCACAATAA+AGG	0.404131	3:-108767522	MsaT017400.1:CDS
TAATTTCAAGACCTAAATTC+AGG	0.410173	3:-108766799	MsaT017400.1:intron
GCGTCGGTGGCGACAATGTC+AGG	0.412454	3:+108769528	None:intergenic
TGTTTCCACGGCCGTCTCAC+TGG	0.412786	3:+108769419	None:intergenic
GGACTTGGACCCTCCATCTC+TGG	0.418333	3:-108767306	MsaT017400.1:CDS
ATTAATGGAGCAGTTGGACT+TGG	0.419842	3:-108767321	MsaT017400.1:CDS
GCTACCTATGCAAGAACTAA+TGG	0.420530	3:-108764253	MsaT017400.1:CDS
TAAATTGATGTGTGATGAAC+AGG	0.421391	3:-108766122	MsaT017400.1:CDS
AGCCACTGGGATGGAGCAAT+TGG	0.435821	3:+108764273	None:intergenic
GTACTCCACACCAAAGCTTC+CGG	0.447922	3:-108769291	MsaT017400.1:CDS
TACTGTGAGTGCTATGCAGC+TGG	0.448205	3:-108767868	MsaT017400.1:CDS
AAAGGAAGCTGACAGGGATA+AGG	0.448296	3:+108766844	None:intergenic
TTCAAATTTCCAGAAATGAG+AGG	0.459036	3:-108766322	MsaT017400.1:intron
CATGACTGCTCAACACCAAC+AGG	0.463692	3:-108767208	MsaT017400.1:intron
ACCAAGAACATCCCTGAACT+TGG	0.469962	3:+108765967	None:intergenic
TGATAGTGGTGCTGAAACTA+AGG	0.471033	3:-108764320	MsaT017400.1:CDS
TCTTTCGTTGAGGTTGCTCA+TGG	0.471035	3:-108764215	MsaT017400.1:CDS
CACTGCTGTTTATGCAGAGC+AGG	0.471249	3:-108766005	MsaT017400.1:CDS
CTGTTTATGCAGAGCAGGAA+AGG	0.476553	3:-108766000	MsaT017400.1:CDS
AAGGAAGCTGACAGGGATAA+GGG	0.478405	3:+108766845	None:intergenic
TCACAGCCTCAAAATAAAGC+AGG	0.479128	3:-108768060	MsaT017400.1:CDS
GCTGCCCGAAAGGAGGCAAT+TGG	0.479529	3:-108767790	MsaT017400.1:CDS
GTTCTTGCATAGGTAGCCAC+TGG	0.479534	3:+108764259	None:intergenic
GATAAGGGAGATGAAGCTAT+AGG	0.479560	3:+108766860	None:intergenic
GAACATCCCTGAACTTGGTC+AGG	0.480468	3:+108765972	None:intergenic
GATTGAAAATGCGGCATCAC+CGG	0.492928	3:+108769353	None:intergenic
GGAGAAGAGCGAAACGACGC+TGG	0.493971	3:-108769615	MsaT017400.1:CDS
CGGAAACAAAGGAAGCTGAC+AGG	0.494375	3:+108766837	None:intergenic
TGTTATATGGGTTCCAGAGA+TGG	0.499612	3:+108767293	None:intergenic
TGAGGCTGTGATCTAGGGCT+AGG	0.501431	3:+108768072	None:intergenic
CGACGCTGGATTTAGCTAAT+CGG	0.509373	3:-108769601	MsaT017400.1:CDS
AAAGGATGTCACTGCAAGAA+AGG	0.510127	3:-108767504	MsaT017400.1:CDS
TTGGATTTCGCCGCCGCATG+TGG	0.510164	3:-108769563	MsaT017400.1:CDS
ATCGAAACTAACTGCGGGCG+CGG	0.513160	3:+108769329	None:intergenic
TCAAATTTCCAGAAATGAGA+GGG	0.516415	3:-108766321	MsaT017400.1:intron
CTGAAATTCAATTAATAGGA+AGG	0.519135	3:-108767533	MsaT017400.1:CDS
GCTTATCCTGACCAAGTTCA+GGG	0.520596	3:-108765978	MsaT017400.1:CDS
CAAAAGTCTTCCAACTCTGA+TGG	0.520619	3:-108766031	MsaT017400.1:CDS
ATGATTCTCCGAAACAGGCT+TGG	0.524373	3:+108766213	None:intergenic
AAATGCATTTGCGCCGGAGG+AGG	0.526333	3:+108769455	None:intergenic
GCTGCCATTAATGGAGCAGT+TGG	0.529615	3:-108767327	MsaT017400.1:CDS
CAGAGCAGAGGACGTTGGCA+TGG	0.529760	3:+108767454	None:intergenic
AGTCACCAGTGAGACGGCCG+TGG	0.538539	3:-108769424	MsaT017400.1:CDS
CACCAAAGCTTCCGGTGAAG+AGG	0.538599	3:-108769283	MsaT017400.1:CDS
GAAGCTGCAAAGACAAATGC+AGG	0.539292	3:-108766606	MsaT017400.1:intron
TGTGACAGTGACTGCGGCGT+CGG	0.541888	3:+108769512	None:intergenic
TGTGGTGGTGATTGTTTCCA+CGG	0.542299	3:+108769407	None:intergenic
AGCGCTTGAAACCTCTTCAC+CGG	0.544016	3:+108769272	None:intergenic
TTCATGTTGAAGGTCTGTGT+TGG	0.547492	3:-108766691	MsaT017400.1:intron
GGAAGCTTTGGTGTGGAGTA+CGG	0.547715	3:+108769293	None:intergenic
TCCAAATGCATTTGCGCCGG+AGG	0.550391	3:+108769452	None:intergenic
CTCTGCTGCTGCCACTGTGG+TGG	0.557444	3:+108769392	None:intergenic
ACCGTCGGATTTGCCTCCTC+CGG	0.560178	3:-108769468	MsaT017400.1:CDS
GGAGGCAAATCCGACGGTGT+CGG	0.562332	3:+108769473	None:intergenic
ATAGGCAGTGTCGGAAACAA+AGG	0.562595	3:+108766826	None:intergenic
GAACAATGAGGCTGCCCGAA+AGG	0.567258	3:-108767800	MsaT017400.1:CDS
GAATCATCGAAACTAACTGC+GGG	0.568372	3:+108769324	None:intergenic
TGCATAGGTAGCCACTGGGA+TGG	0.569627	3:+108764264	None:intergenic
ATGTCCATTAGTTCTTGCAT+AGG	0.570734	3:+108764249	None:intergenic
GATTTCGCCGCCGCATGTGG+AGG	0.572850	3:-108769560	MsaT017400.1:CDS
AAATGAGAGGGAAAGCTGCT+AGG	0.574833	3:-108766309	MsaT017400.1:CDS
CGGTGTCGGAGGTCGTAGAA+TGG	0.576418	3:+108769487	None:intergenic
AGCAGTGTATCCATCAGAGT+TGG	0.576661	3:+108766021	None:intergenic
TAGTCTAGTTCAAATCAGAC+AGG	0.581100	3:-108767358	MsaT017400.1:CDS
TTAAGTGTTTCTGGTGACAG+TGG	0.589606	3:+108766142	None:intergenic
GGAGGCAATTGGAATGACAC+TGG	0.589713	3:-108767779	MsaT017400.1:CDS
GACAGTGACTGCGGCGTCGG+TGG	0.593114	3:+108769515	None:intergenic
AAATCCAAATGCATTTGCGC+CGG	0.594109	3:+108769449	None:intergenic
CTTCACCGGAAGCTTTGGTG+TGG	0.594505	3:+108769286	None:intergenic
CAATGAGGCTGCCCGAAAGG+AGG	0.594923	3:-108767797	MsaT017400.1:CDS
CACAGCCTCAAAATAAAGCA+GGG	0.602704	3:-108768059	MsaT017400.1:CDS
GGAAACAAAGGAAGCTGACA+GGG	0.605542	3:+108766838	None:intergenic
GGCAAATCCGACGGTGTCGG+AGG	0.608094	3:+108769476	None:intergenic
TATATGGGTTCCAGAGATGG+AGG	0.609649	3:+108767296	None:intergenic
GCAGCTGGGATCTATTGTGA+TGG	0.610068	3:-108767853	MsaT017400.1:CDS
GAGAACGTCACAGTCTCCGC+CGG	0.610187	3:-108769372	MsaT017400.1:CDS
GGGCGCGGTGATTGAAAATG+CGG	0.613912	3:+108769344	None:intergenic
ACTGTGAGTGCTATGCAGCT+GGG	0.620605	3:-108767867	MsaT017400.1:CDS
TGATGTGTGATGAACAGGAT+GGG	0.620967	3:-108766117	MsaT017400.1:CDS
ATACTACTGATCTTTCGTTG+AGG	0.630168	3:-108764225	MsaT017400.1:CDS
TTCTTGCATAGGTAGCCACT+GGG	0.635007	3:+108764260	None:intergenic
TCATAATAATCTGAACAATG+AGG	0.638704	3:-108767812	MsaT017400.1:CDS
GATAGTGGTGCTGAAACTAA+GGG	0.640097	3:-108764319	MsaT017400.1:CDS
TGAAAATGCGGCATCACCGG+CGG	0.641386	3:+108769356	None:intergenic
GGCGACAATGTCAGGTACGA+CGG	0.643457	3:+108769536	None:intergenic
GCCGGAGGAGGCAAATCCGA+CGG	0.645977	3:+108769467	None:intergenic
TCACTCACAGATCAAACTGT+CGG	0.650466	3:-108767231	MsaT017400.1:CDS
ATATGGGTTCCAGAGATGGA+GGG	0.670217	3:+108767297	None:intergenic
TCTACGACCTCCGACACCGT+CGG	0.672076	3:-108769483	MsaT017400.1:CDS
TTGATGTGTGATGAACAGGA+TGG	0.672796	3:-108766118	MsaT017400.1:CDS
GTTCTCTGCTGCTGCCACTG+TGG	0.675511	3:+108769389	None:intergenic
TAGCTAATCGGAAATTTGCG+CGG	0.681451	3:-108769589	MsaT017400.1:CDS
CGACGGACCTCCACATGCGG+CGG	0.682146	3:+108769553	None:intergenic
GTACGACGGACCTCCACATG+CGG	0.684282	3:+108769550	None:intergenic
TGCCAATTGCTCCATCCCAG+TGG	0.687073	3:-108764275	MsaT017400.1:CDS
ATAGTGGTGCTGAAACTAAG+GGG	0.690161	3:-108764318	MsaT017400.1:CDS
TGAATCATCGAAACTAACTG+CGG	0.719757	3:+108769323	None:intergenic
ATGGTTTGTGACAGTGACTG+CGG	0.730603	3:+108769506	None:intergenic
GGAAACAATCACCACCACAG+TGG	0.761756	3:-108769403	MsaT017400.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	108764210	108769639	108764210	ID=MsaG017400
Chr3	mRNA	108764210	108769639	108764210	ID=MsaT017400.1;Parent=MsaG017400
Chr3	exon	108764210	108764406	108764210	ID=MsaT017400.1.exon8;Parent=MsaT017400.1
Chr3	CDS	108764210	108764406	108764210	ID=cds.MsaT017400.1;Parent=MsaT017400.1
Chr3	exon	108765939	108766331	108765939	ID=MsaT017400.1.exon7;Parent=MsaT017400.1
Chr3	CDS	108765939	108766331	108765939	ID=cds.MsaT017400.1;Parent=MsaT017400.1
Chr3	exon	108766607	108766701	108766607	ID=MsaT017400.1.exon6;Parent=MsaT017400.1
Chr3	CDS	108766607	108766701	108766607	ID=cds.MsaT017400.1;Parent=MsaT017400.1
Chr3	exon	108766800	108766891	108766800	ID=MsaT017400.1.exon5;Parent=MsaT017400.1
Chr3	CDS	108766800	108766891	108766800	ID=cds.MsaT017400.1;Parent=MsaT017400.1
Chr3	exon	108767209	108767565	108767209	ID=MsaT017400.1.exon4;Parent=MsaT017400.1
Chr3	CDS	108767209	108767565	108767209	ID=cds.MsaT017400.1;Parent=MsaT017400.1
Chr3	exon	108767714	108767891	108767714	ID=MsaT017400.1.exon3;Parent=MsaT017400.1
Chr3	CDS	108767714	108767891	108767714	ID=cds.MsaT017400.1;Parent=MsaT017400.1
Chr3	exon	108767994	108768104	108767994	ID=MsaT017400.1.exon2;Parent=MsaT017400.1
Chr3	CDS	108767994	108768104	108767994	ID=cds.MsaT017400.1;Parent=MsaT017400.1
Chr3	exon	108769272	108769639	108769272	ID=MsaT017400.1.exon1;Parent=MsaT017400.1
Chr3	CDS	108769272	108769639	108769272	ID=cds.MsaT017400.1;Parent=MsaT017400.1

Gene Sequence

>MsaT017400.1

ATGGAGAAGAGCGAAACGACGCTGGATTTAGCTAATCGGAAATTTGCGCGGCAATTGGATTTCGCCGCCGCATGTGGAGGTCCGTCGTACCTGACATTGTCGCCACCGACGCCGCAGTCACTGTCACAAACCATTCTACGACCTCCGACACCGTCGGATTTGCCTCCTCCGGCGCAAATGCATTTGGATTTTCAGTCACCAGTGAGACGGCCGTGGAAACAATCACCACCACAGTGGCAGCAGCAGAGAACGTCACAGTCTCCGCCGGTGATGCCGCATTTTCAATCACCGCGCCCGCAGTTAGTTTCGATGATTCATCGATTACCGTACTCCACACCAAAGCTTCCGGTGAAGAGGTTTCAAGCGCTAAACGAGTCTCCTAGCCCTAGATCACAGCCTCAAAATAAAGCAGGGTTAAAGGACAACACTCTAAAGAAGCAAAAACGGTGTAACTGCAAAAATTCCAAATGCCTTAAATTGTACTGTGAGTGCTATGCAGCTGGGATCTATTGTGATGGTTGCAACTGTCAAAATTGTCATAATAATCTGAACAATGAGGCTGCCCGAAAGGAGGCAATTGGAATGACACTGGAAAAAAATCCAAATGCTTTCAGACCAAAAATTGCAAGCAGTCCGCAAAAACCAGAAGTTTCTATGGAGGAAGTGTCTGAAATTCAATTAATAGGAAGGCACAATAAAGGATGTCACTGCAAGAAAGGTTGCCTTAAGAAGTATTGTGAGTGTTTCCATGCCAACGTCCTCTGCTCTGAAAATTGTAAATGCATTGACTGCAAGAATTTTGAAGGAAGTGACGAATGGAGAATAGTTTTACAAGAAGAGTGTAGTCTAGTTCAAATCAGACAGGCAACTAATGCTGCCATTAATGGAGCAGTTGGACTTGGACCCTCCATCTCTGGAACCCATATAACACCCAAGAAGAGAAAAATCCAGGAAAGTTTTTCTGGCAAATCACTCACAGATCAAACTGTCGGCATGACTGCTCAACACCAACAGGAACTTGATCCTATAGCTTCATCTCCCTTATCCCTGTCAGCTTCCTTTGTTTCCGACACTGCCTATAAAATAATTTCAAGACCTAAATTCAGGTCTGTGTTGGCTGATGTCCTCCAGACACAGAATGTGAAAAATCTTTGTTCACTTTTAGTTGTTCTCTCCAAAGAAGCTGCAAAGACAAATGCAGAAATGAGAGGGAAAGCTGCTAGGAAAATAGAGACCGAGAAATATGAAGCTTCTATTGCTTCATCATCTCAATTGCTGCAAGACAGTAGAGATGTTGCCAAGCCTGTTTCGGAGAATCATGCAAATAAAGATGTAGCAGATGCAGTTGATATTGACATTCATAATAGGCCACTGTCACCAGAAACACTTAAATTGATGTGTGATGAACAGGATGGGATGTTTTTCGGTAATGGTTCTGCAAATGGAGTTGCAATTGACAATACTTATCAGAACATGATTCAAAAGTCTTCCAACTCTGATGGATACACTGCTGTTTATGCAGAGCAGGAAAGGCTTATCCTGACCAAGTTCAGGGATGTTCTTGGTGAACTGATTATTATTGGTAGCATTAAAGAAACAATGCACTCTTCATCAGTGAAGAAAGATATGAGTATCGAGAAAACACCTAAAAACAATGGTGATAGTGGTGCTGAAACTAAGGGGATTCTTCTCAACAACTGCACTGCCAATTGCTCCATCCCAGTGGCTACCTATGCAAGAACTAATGGACATGATACTACTGATCTTTCGTTGAGGTTGCTCATGGATTGA

Protein sequence

>MsaT017400.1

MEKSETTLDLANRKFARQLDFAAACGGPSYLTLSPPTPQSLSQTILRPPTPSDLPPPAQMHLDFQSPVRRPWKQSPPQWQQQRTSQSPPVMPHFQSPRPQLVSMIHRLPYSTPKLPVKRFQALNESPSPRSQPQNKAGLKDNTLKKQKRCNCKNSKCLKLYCECYAAGIYCDGCNCQNCHNNLNNEAARKEAIGMTLEKNPNAFRPKIASSPQKPEVSMEEVSEIQLIGRHNKGCHCKKGCLKKYCECFHANVLCSENCKCIDCKNFEGSDEWRIVLQEECSLVQIRQATNAAINGAVGLGPSISGTHITPKKRKIQESFSGKSLTDQTVGMTAQHQQELDPIASSPLSLSASFVSDTAYKIISRPKFRSVLADVLQTQNVKNLCSLLVVLSKEAAKTNAEMRGKAARKIETEKYEASIASSSQLLQDSRDVAKPVSENHANKDVADAVDIDIHNRPLSPETLKLMCDEQDGMFFGNGSANGVAIDNTYQNMIQKSSNSDGYTAVYAEQERLILTKFRDVLGELIIIGSIKETMHSSSVKKDMSIEKTPKNNGDSGAETKGILLNNCTANCSIPVATYARTNGHDTTDLSLRLLMD*