AlfalfaGEDB | MsaG017400

M. sativa ssp. caerulea / MsaG017400

KEGG: K21776
GO: -
PFAM: PF03638.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017400	XP_024634048.1	95.805	596	24	1	1	596	1	595	0.0	1136

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017400	sp\|Q9SZD1\|TCX5_ARATH	40.433	554	243	18	13	533	24	523	3.94e-111	348

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017400	tr\|A0A072V2F6\|A0A072V2F6_MEDTR	91.639	598	46	4	1	596	1	596	0.0	1090

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TFs/TRs:

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Gene ID	Type	Classification
MsaG017400	TF	CPP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000243	MsaG017400	0.816732	8.256088e-52	1.667830e-49
MsaG000247	MsaG017400	0.803196	6.584100e-49	9.573392e-47
MsaG000400	MsaG017400	0.803455	5.821462e-49	8.515137e-47
MsaG000952	MsaG017400	0.820894	9.457746e-53	2.129889e-50
MsaG001132	MsaG017400	0.813268	4.805223e-51	8.893394e-49
MsaG001855	MsaG017400	0.816776	8.068892e-52	1.631902e-49
MsaG001867	MsaG017400	0.805417	2.280836e-49	3.491441e-47
MsaG002146	MsaG017400	0.822126	4.928679e-53	1.146840e-50
MsaG002564	MsaG017400	0.801975	1.172085e-48	1.657181e-46
MsaG002965	MsaG017400	0.819908	1.587895e-52	3.483848e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017400	MtrunA17_Chr3g0139951	97.000	400	12	0	1	400	1	400	0.0	806
MsaG017400	MtrunA17_Chr6g0485811	45.376	465	225	10	125	570	107	561	7.44e-117	360
MsaG017400	MtrunA17_Chr8g0390351	44.662	459	228	11	109	549	44	494	4.37e-114	352
MsaG017400	MtrunA17_Chr3g0139941	78.125	192	9	2	402	593	1	159	6.66e-96	290
MsaG017400	MtrunA17_Chr1g0149101	44.604	139	73	4	148	282	498	636	1.09e-28	121
MsaG017400	MtrunA17_Chr5g0394661	48.800	125	60	4	148	269	488	611	4.10e-27	116
MsaG017400	MtrunA17_Chr1g0205031	36.719	128	68	5	143	267	409	526	6.65e-14	74.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017400	AT4G29000.1	40.433	554	243	18	13	533	24	523	4.00e-112	348
MsaG017400	AT2G20110.3	40.883	521	247	14	84	590	66	539	9.66e-106	329
MsaG017400	AT2G20110.1	41.352	503	240	13	84	572	66	527	8.30e-105	328
MsaG017400	AT2G20110.2	40.588	510	241	13	84	572	66	534	7.51e-103	323
MsaG017400	AT5G25790.1	36.722	482	248	15	49	524	11	441	8.10e-83	267
MsaG017400	AT5G25790.2	35.714	504	267	15	49	546	11	463	1.69e-82	268
MsaG017400	AT5G25790.3	36.515	482	245	16	49	524	11	437	4.08e-82	265
MsaG017400	AT3G16160.1	44.737	152	80	2	116	266	34	182	3.13e-32	128
MsaG017400	AT3G22760.2	41.401	157	87	3	126	280	186	339	1.50e-28	119
MsaG017400	AT3G22760.1	41.401	157	87	3	126	280	309	462	2.41e-28	120

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Find 126 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACATACCTGAATTT+AGG	0.297536	3:+108766788	None:intergenic
AAAGGAAGCTGACAGGGATA+AGG	0.448296	3:+108766844	None:intergenic
AAAGGATGTCACTGCAAGAA+AGG	0.510127	3:-108767504	MsaT017400.1:CDS
AAATCCAAATGCATTTGCGC+CGG	0.594109	3:+108769449	None:intergenic
AAATGAGAGGGAAAGCTGCT+AGG	0.574833	3:-108766309	MsaT017400.1:CDS
AAATGCATTTGCGCCGGAGG+AGG	0.526333	3:+108769455	None:intergenic
AACACTCACAATACTTCTTA+AGG	0.401328	3:+108767478	None:intergenic
AACCTCTTCACCGGAAGCTT+TGG	0.384541	3:+108769281	None:intergenic
AAGGAAGCTGACAGGGATAA+GGG	0.478405	3:+108766845	None:intergenic
AAGTCCAACTGCTCCATTAA+TGG	0.310344	3:+108767323	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	108764210	108769639	108764210	ID=MsaG017400
Chr3	mRNA	108764210	108769639	108764210	ID=MsaT017400.1;Parent=MsaG017400
Chr3	exon	108764210	108764406	108764210	ID=MsaT017400.1.exon8;Parent=MsaT017400.1
Chr3	CDS	108764210	108764406	108764210	ID=cds.MsaT017400.1;Parent=MsaT017400.1
Chr3	exon	108765939	108766331	108765939	ID=MsaT017400.1.exon7;Parent=MsaT017400.1
Chr3	CDS	108765939	108766331	108765939	ID=cds.MsaT017400.1;Parent=MsaT017400.1
Chr3	exon	108766607	108766701	108766607	ID=MsaT017400.1.exon6;Parent=MsaT017400.1
Chr3	CDS	108766607	108766701	108766607	ID=cds.MsaT017400.1;Parent=MsaT017400.1
Chr3	exon	108766800	108766891	108766800	ID=MsaT017400.1.exon5;Parent=MsaT017400.1
Chr3	CDS	108766800	108766891	108766800	ID=cds.MsaT017400.1;Parent=MsaT017400.1
Chr3	exon	108767209	108767565	108767209	ID=MsaT017400.1.exon4;Parent=MsaT017400.1
Chr3	CDS	108767209	108767565	108767209	ID=cds.MsaT017400.1;Parent=MsaT017400.1
Chr3	exon	108767714	108767891	108767714	ID=MsaT017400.1.exon3;Parent=MsaT017400.1
Chr3	CDS	108767714	108767891	108767714	ID=cds.MsaT017400.1;Parent=MsaT017400.1
Chr3	exon	108767994	108768104	108767994	ID=MsaT017400.1.exon2;Parent=MsaT017400.1
Chr3	CDS	108767994	108768104	108767994	ID=cds.MsaT017400.1;Parent=MsaT017400.1
Chr3	exon	108769272	108769639	108769272	ID=MsaT017400.1.exon1;Parent=MsaT017400.1
Chr3	CDS	108769272	108769639	108769272	ID=cds.MsaT017400.1;Parent=MsaT017400.1

Gene Sequence

>MsaT017400.1

ATGGAGAAGAGCGAAACGACGCTGGATTTAGCTAATCGGAAATTTGCGCGGCAATTGGATTTCGCCGCCGCATGTGGAGGTCCGTCGTACCTGACATTGTCGCCACCGACGCCGCAGTCACTGTCACAAACCATTCTACGACCTCCGACACCGTCGGATTTGCCTCCTCCGGCGCAAATGCATTTGGATTTTCAGTCACCAGTGAGACGGCCGTGGAAACAATCACCACCACAGTGGCAGCAGCAGAGAACGTCACAGTCTCCGCCGGTGATGCCGCATTTTCAATCACCGCGCCCGCAGTTAGTTTCGATGATTCATCGATTACCGTACTCCACACCAAAGCTTCCGGTGAAGAGGTTTCAAGCGCTAAACGAGTCTCCTAGCCCTAGATCACAGCCTCAAAATAAAGCAGGGTTAAAGGACAACACTCTAAAGAAGCAAAAACGGTGTAACTGCAAAAATTCCAAATGCCTTAAATTGTACTGTGAGTGCTATGCAGCTGGGATCTATTGTGATGGTTGCAACTGTCAAAATTGTCATAATAATCTGAACAATGAGGCTGCCCGAAAGGAGGCAATTGGAATGACACTGGAAAAAAATCCAAATGCTTTCAGACCAAAAATTGCAAGCAGTCCGCAAAAACCAGAAGTTTCTATGGAGGAAGTGTCTGAAATTCAATTAATAGGAAGGCACAATAAAGGATGTCACTGCAAGAAAGGTTGCCTTAAGAAGTATTGTGAGTGTTTCCATGCCAACGTCCTCTGCTCTGAAAATTGTAAATGCATTGACTGCAAGAATTTTGAAGGAAGTGACGAATGGAGAATAGTTTTACAAGAAGAGTGTAGTCTAGTTCAAATCAGACAGGCAACTAATGCTGCCATTAATGGAGCAGTTGGACTTGGACCCTCCATCTCTGGAACCCATATAACACCCAAGAAGAGAAAAATCCAGGAAAGTTTTTCTGGCAAATCACTCACAGATCAAACTGTCGGCATGACTGCTCAACACCAACAGGAACTTGATCCTATAGCTTCATCTCCCTTATCCCTGTCAGCTTCCTTTGTTTCCGACACTGCCTATAAAATAATTTCAAGACCTAAATTCAGGTCTGTGTTGGCTGATGTCCTCCAGACACAGAATGTGAAAAATCTTTGTTCACTTTTAGTTGTTCTCTCCAAAGAAGCTGCAAAGACAAATGCAGAAATGAGAGGGAAAGCTGCTAGGAAAATAGAGACCGAGAAATATGAAGCTTCTATTGCTTCATCATCTCAATTGCTGCAAGACAGTAGAGATGTTGCCAAGCCTGTTTCGGAGAATCATGCAAATAAAGATGTAGCAGATGCAGTTGATATTGACATTCATAATAGGCCACTGTCACCAGAAACACTTAAATTGATGTGTGATGAACAGGATGGGATGTTTTTCGGTAATGGTTCTGCAAATGGAGTTGCAATTGACAATACTTATCAGAACATGATTCAAAAGTCTTCCAACTCTGATGGATACACTGCTGTTTATGCAGAGCAGGAAAGGCTTATCCTGACCAAGTTCAGGGATGTTCTTGGTGAACTGATTATTATTGGTAGCATTAAAGAAACAATGCACTCTTCATCAGTGAAGAAAGATATGAGTATCGAGAAAACACCTAAAAACAATGGTGATAGTGGTGCTGAAACTAAGGGGATTCTTCTCAACAACTGCACTGCCAATTGCTCCATCCCAGTGGCTACCTATGCAAGAACTAATGGACATGATACTACTGATCTTTCGTTGAGGTTGCTCATGGATTGA

Protein sequence

>MsaT017400.1

MEKSETTLDLANRKFARQLDFAAACGGPSYLTLSPPTPQSLSQTILRPPTPSDLPPPAQMHLDFQSPVRRPWKQSPPQWQQQRTSQSPPVMPHFQSPRPQLVSMIHRLPYSTPKLPVKRFQALNESPSPRSQPQNKAGLKDNTLKKQKRCNCKNSKCLKLYCECYAAGIYCDGCNCQNCHNNLNNEAARKEAIGMTLEKNPNAFRPKIASSPQKPEVSMEEVSEIQLIGRHNKGCHCKKGCLKKYCECFHANVLCSENCKCIDCKNFEGSDEWRIVLQEECSLVQIRQATNAAINGAVGLGPSISGTHITPKKRKIQESFSGKSLTDQTVGMTAQHQQELDPIASSPLSLSASFVSDTAYKIISRPKFRSVLADVLQTQNVKNLCSLLVVLSKEAAKTNAEMRGKAARKIETEKYEASIASSSQLLQDSRDVAKPVSENHANKDVADAVDIDIHNRPLSPETLKLMCDEQDGMFFGNGSANGVAIDNTYQNMIQKSSNSDGYTAVYAEQERLILTKFRDVLGELIIIGSIKETMHSSSVKKDMSIEKTPKNNGDSGAETKGILLNNCTANCSIPVATYARTNGHDTTDLSLRLLMD*