AlfalfaGEDB | MsaG017412

M. sativa ssp. caerulea / MsaG017412

KEGG: K02218 K08960
GO: -
PFAM: PF00069.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017412	XP_013462017.1	97.424	427	7	1	1	427	1	423	0.0	867

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017412	sp\|Q93Z18\|CKL3_ARATH	60.748	428	147	5	1	424	1	411	0.0	524

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017412	tr\|A0A072V2G9\|A0A072V2G9_MEDTR	97.424	427	7	1	1	427	1	423	0.0	867

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000419	MsaG017412	0.852213	1.024941e-60	5.998443e-58
MsaG000497	MsaG017412	0.804939	2.868467e-49	4.342606e-47
MsaG001273	MsaG017412	0.805767	1.927078e-49	2.974214e-47
MsaG002978	MsaG017412	0.810137	2.288643e-50	3.921372e-48
MsaG003831	MsaG017412	0.803009	7.192944e-49	1.041359e-46
MsaG004092	MsaG017412	0.820493	1.168036e-52	2.602699e-50
MsaG004112	MsaG017412	0.812817	6.026212e-51	1.102837e-48
MsaG004273	MsaG017412	0.802006	1.155231e-48	1.634442e-46
MsaG004280	MsaG017412	0.812333	7.683177e-51	1.389232e-48
MsaG005055	MsaG017412	0.805190	2.542534e-49	3.871831e-47
MsaG005239	MsaG017412	0.818823	2.798468e-52	5.967067e-50
MsaG005406	MsaG017412	0.850087	4.054647e-60	2.203758e-57
MsaG005886	MsaG017412	0.851502	1.627310e-60	9.289180e-58
MsaG005984	MsaG017412	0.809437	3.232176e-50	5.445204e-48
MsaG006610	MsaG017412	0.876280	3.294008e-68	5.015562e-65
MsaG006855	MsaG017412	0.812665	6.505695e-51	1.186058e-48
MsaG007241	MsaG017412	0.832354	1.793738e-55	5.556554e-53
MsaG007315	MsaG017412	0.819488	1.979176e-52	4.294379e-50
MsaG007416	MsaG017412	0.801732	1.314177e-48	1.847834e-46
MsaG007828	MsaG017412	0.815341	1.682232e-51	3.280076e-49
MsaG008250	MsaG017412	0.803305	6.250202e-49	9.110756e-47
MsaG008237	MsaG017412	0.809953	2.506266e-50	4.275137e-48
MsaG008298	MsaG017412	0.833506	9.302233e-56	2.980572e-53
MsaG008434	MsaG017412	0.802366	9.748857e-49	1.390746e-46
MsaG008634	MsaG017412	0.813620	4.025267e-51	7.515906e-49
MsaG009389	MsaG017412	0.821641	6.373615e-53	1.464048e-50
MsaG009603	MsaG017412	0.842275	5.311207e-58	2.228099e-55
MsaG010104	MsaG017412	0.852970	6.247257e-61	3.754975e-58
MsaG010112	MsaG017412	0.806260	1.519548e-49	2.372825e-47
MsaG010365	MsaG017412	0.837540	8.977737e-57	3.246648e-54
MsaG010860	MsaG017412	0.801909	1.209236e-48	1.707142e-46
MsaG011109	MsaG017412	0.806288	1.498866e-49	2.342088e-47
MsaG011298	MsaG017412	0.818136	3.998956e-52	8.376265e-50
MsaG011941	MsaG017412	0.801575	1.414867e-48	1.982292e-46
MsaG011952	MsaG017412	0.801011	1.843266e-48	2.549734e-46
MsaG012038	MsaG017412	0.824580	1.324094e-53	3.292727e-51
MsaG012489	MsaG017412	0.818950	2.620139e-52	5.605531e-50
MsaG012496	MsaG017412	0.804443	3.635645e-49	5.441107e-47
MsaG012586	MsaG017412	0.806709	1.223080e-49	1.930173e-47
MsaG015829	MsaG017412	0.801957	1.182111e-48	1.670654e-46
MsaG015851	MsaG017412	0.803775	4.999947e-49	7.367981e-47
MsaG016495	MsaG017412	0.808196	5.937400e-50	9.707956e-48
MsaG017303	MsaG017412	0.805170	2.567560e-49	3.908096e-47
MsaG017286	MsaG017412	0.832853	1.350498e-55	4.244752e-53
MsaG017412	MsaG018489	0.808434	5.284478e-50	8.690000e-48
MsaG017412	MsaG018598	0.803333	6.170279e-49	8.999835e-47
MsaG017412	MsaG018786	0.814905	2.099861e-51	4.049494e-49
MsaG017412	MsaG018795	0.821456	7.027617e-53	1.606329e-50
MsaG017412	MsaG018975	0.809243	3.554766e-50	5.960374e-48
MsaG017412	MsaG019275	0.821567	6.629835e-53	1.519861e-50
MsaG017412	MsaG019308	0.859205	9.520012e-63	7.181825e-60
MsaG017412	MsaG019569	0.805789	1.907070e-49	2.944848e-47
MsaG017412	MsaG019657	0.811069	1.442686e-50	2.528829e-48
MsaG017412	MsaG019788	0.821552	6.681732e-53	1.531162e-50
MsaG017412	MsaG019935	0.809065	3.879539e-50	6.477490e-48
MsaG017412	MsaG020245	0.818751	2.906277e-52	6.185216e-50
MsaG017412	MsaG020288	0.860671	3.457324e-63	2.758117e-60
MsaG017412	MsaG020467	0.840871	1.240564e-57	4.977103e-55
MsaG017412	MsaG020718	0.822615	3.798335e-53	8.955567e-51
MsaG017412	MsaG021321	0.814998	2.003346e-51	3.872483e-49
MsaG017412	MsaG021322	0.813328	4.662281e-51	8.641799e-49
MsaG017412	MsaG021650	0.827774	2.321822e-54	6.309142e-52
MsaG017412	MsaG021720	0.840750	1.333929e-57	5.331151e-55
MsaG017412	MsaG022515	0.802105	1.102401e-48	1.563218e-46
MsaG017412	MsaG023962	0.802150	1.079375e-48	1.532159e-46
MsaG017412	MsaG024008	0.810404	2.005410e-50	3.458705e-48
MsaG017412	MsaG025289	0.806326	1.472027e-49	2.302153e-47
MsaG017412	MsaG026022	0.852305	9.655105e-61	5.669262e-58
MsaG017412	MsaG026192	0.816068	1.160503e-51	2.304851e-49
MsaG017412	MsaG026849	0.823509	2.355294e-53	5.689122e-51
MsaG017412	MsaG026830	0.808294	5.659052e-50	9.274696e-48
MsaG017412	MsaG026831	0.831691	2.610207e-55	7.932035e-53
MsaG017412	MsaG027026	0.821737	6.057167e-53	1.394892e-50
MsaG017412	MsaG026987	0.824823	1.161472e-53	2.907583e-51
MsaG017412	MsaG027395	0.801311	1.601951e-48	2.230979e-46
MsaG017412	MsaG027505	0.846236	4.639631e-59	2.214711e-56
MsaG017412	MsaG027557	0.813133	5.142402e-51	9.485466e-49
MsaG017412	MsaG028109	0.813500	4.276257e-51	7.960422e-49
MsaG017412	MsaG029070	0.804516	3.512279e-49	5.265286e-47
MsaG017412	MsaG029422	0.811377	1.237800e-50	2.186106e-48
MsaG017412	MsaG029919	0.816887	7.623428e-52	1.546195e-49
MsaG017412	MsaG035151	0.812543	6.913424e-51	1.256658e-48
MsaG017412	MsaG035198	0.837360	9.980539e-57	3.589308e-54
MsaG017412	MsaG042000	0.828402	1.641420e-54	4.539683e-52
MsaG017412	MsaG042579	0.823074	2.972488e-53	7.096069e-51
MsaG017412	MsaG043788	0.835880	2.368278e-56	8.144658e-54
MsaG017412	MsaG044278	0.803234	6.466536e-49	9.410693e-47
MsaG017412	MsaG044319	0.807126	9.994164e-50	1.592771e-47
MsaG017412	MsaG044477	0.821872	5.638965e-53	1.303242e-50
MsaG017412	MsaG044546	0.803820	4.893639e-49	7.218811e-47
MsaG017412	MsaG044955	0.802322	9.956134e-49	1.418884e-46
MsaG017412	MsaG044957	0.817173	6.579190e-52	1.344315e-49
MsaG017412	MsaG045251	0.831164	3.513975e-55	1.051459e-52
MsaG017412	MsaG045548	0.805941	1.772008e-49	2.746116e-47
MsaG017412	MsaG045568	0.807035	1.044172e-49	1.660520e-47
MsaG017412	MsaG045767	0.803434	5.878792e-49	8.594952e-47
MsaG017412	MsaG045822	0.817768	4.839763e-52	1.004134e-49
MsaG017412	MsaG045975	0.800096	2.827450e-48	3.831094e-46
MsaG017412	MsaG046027	0.801778	1.286339e-48	1.810531e-46
MsaG017412	MsaG046054	0.809838	2.652664e-50	4.512419e-48
MsaG017412	MsaG046143	0.832315	1.833570e-55	5.673509e-53
MsaG017412	MsaG046540	0.818870	2.732152e-52	5.832744e-50
MsaG017412	MsaG046473	0.805305	2.406207e-49	3.673859e-47
MsaG017412	MsaG046498	0.808410	5.348195e-50	8.789485e-48
MsaG017412	MsaG046507	0.846958	2.952341e-59	1.443646e-56
MsaG017412	MsaG047011	0.810715	1.719255e-50	2.987619e-48
MsaG017412	MsaG001564	0.803551	5.563267e-49	8.155745e-47
MsaG017412	MsaG001950	0.839391	3.006021e-57	1.151213e-54
MsaG017412	MsaG001966	0.812466	7.186773e-51	1.303823e-48
MsaG017412	MsaG012272	0.826470	4.745197e-54	1.243342e-51
MsaG017412	MsaG013252	0.829228	1.038459e-54	2.939299e-52
MsaG017412	MsaG019605	0.815510	1.543289e-51	3.021998e-49
MsaG017412	MsaG019592	0.824723	1.225574e-53	3.059644e-51
MsaG017412	MsaG028121	0.809764	2.750586e-50	4.670599e-48
MsaG017412	MsaG027669	0.816559	9.019466e-52	1.813989e-49
MsaG017412	MsaG034262	0.825860	6.618090e-54	1.704897e-51
MsaG017412	MsaG030837	0.808852	4.306502e-50	7.153651e-48
MsaG017412	MsaG036661	0.830122	6.306825e-55	1.831637e-52
MsaG017412	MsaG036866	0.815815	1.320447e-51	2.605798e-49
MsaG017412	MsaG037513	0.804078	4.327765e-49	6.422719e-47
MsaG017412	MsaG035795	0.811804	1.000469e-50	1.785607e-48
MsaG017412	MsaG036928	0.824018	1.792759e-53	4.390580e-51
MsaG017412	MsaG041852	0.818831	2.787693e-52	5.945216e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017412	MtrunA17_Chr3g0140071	97.424	427	7	1	1	427	1	423	0.0	867
MsaG017412	MtrunA17_Chr1g0146151	61.827	427	152	2	1	427	1	416	0.0	537
MsaG017412	MtrunA17_Chr6g0486611	63.659	410	135	4	1	408	1	398	0.0	535
MsaG017412	MtrunA17_Chr8g0390211	60.233	430	155	5	1	427	1	417	0.0	512
MsaG017412	MtrunA17_Chr4g0071031	65.896	346	111	2	1	345	1	340	6.36e-172	489
MsaG017412	MtrunA17_Chr2g0329981	66.959	342	110	2	1	339	1	342	1.41e-171	489
MsaG017412	MtrunA17_Chr1g0183631	68.239	318	101	0	1	318	1	318	3.61e-168	479
MsaG017412	MtrunA17_Chr7g0261501	67.500	320	104	0	1	320	1	320	1.51e-165	473
MsaG017412	MtrunA17_Chr1g0166821	69.707	307	93	0	1	307	2	308	2.17e-165	473
MsaG017412	MtrunA17_Chr2g0299661	60.533	375	131	5	1	364	1	369	5.01e-165	472
MsaG017412	MtrunA17_Chr8g0342821	65.970	335	105	3	1	335	1	326	1.07e-164	471
MsaG017412	MtrunA17_Chr1g0187571	66.770	322	99	1	1	322	2	315	7.40e-162	464
MsaG017412	MtrunA17_Chr1g0167261	66.667	300	98	1	1	298	2	301	4.59e-148	424
MsaG017412	MtrunA17_Chr3g0140431	36.918	279	163	6	5	273	32	307	1.96e-54	190
MsaG017412	MtrunA17_Chr7g0214531	35.439	285	165	6	5	273	31	312	9.84e-54	188
MsaG017412	MtrunA17_Chr1g0146301	36.201	279	165	6	5	273	118	393	4.77e-53	188
MsaG017412	MtrunA17_Chr1g0213321	35.357	280	167	6	5	273	113	389	1.53e-52	186
MsaG017412	MtrunA17_Chr7g0253211	36.396	283	162	6	9	277	324	602	1.92e-50	182
MsaG017412	MtrunA17_Chr8g0340491	34.752	282	162	7	9	273	128	404	3.95e-46	169
MsaG017412	MtrunA17_Chr7g0245031	26.293	232	144	5	9	229	148	363	6.32e-15	76.6
MsaG017412	MtrunA17_Chr7g0276111	28.440	218	136	6	6	213	141	348	1.01e-14	76.3
MsaG017412	MtrunA17_Chr7g0272841	27.854	219	133	6	8	213	67	273	2.84e-14	75.1
MsaG017412	MtrunA17_Chr7g0242561	28.111	217	130	7	8	213	55	256	3.02e-14	74.7
MsaG017412	MtrunA17_Chr5g0405421	27.854	219	130	6	8	213	98	301	3.29e-14	74.7
MsaG017412	MtrunA17_Chr1g0201571	28.774	212	126	9	9	209	126	323	1.18e-13	72.8
MsaG017412	MtrunA17_Chr8g0374701	27.477	222	136	7	6	213	122	332	1.29e-13	72.8
MsaG017412	MtrunA17_Chr1g0203881	27.848	237	152	8	8	238	40	263	1.88e-13	72.0
MsaG017412	MtrunA17_Chr4g0045261	27.650	217	139	5	6	213	134	341	3.87e-13	71.2
MsaG017412	MtrunA17_Chr3g0127571	27.523	218	138	6	6	213	135	342	4.76e-13	70.9
MsaG017412	MtrunA17_Chr7g0257751	29.139	151	100	4	8	152	57	206	4.93e-13	70.9
MsaG017412	MtrunA17_Chr1g0173541	29.487	156	103	4	8	157	51	205	4.98e-13	70.9
MsaG017412	MtrunA17_Chr5g0402551	27.650	217	139	6	6	213	131	338	2.35e-12	68.9
MsaG017412	MtrunA17_Chr4g0059951	28.571	154	103	4	5	152	69	221	6.92e-12	67.4
MsaG017412	MtrunA17_Chr8g0385971	30.841	214	109	9	14	209	95	287	1.03e-11	66.6
MsaG017412	MtrunA17_Chr3g0093391	25.664	226	129	7	9	209	23	234	1.13e-11	66.6
MsaG017412	MtrunA17_Chr8g0339221	28.846	156	100	3	1	154	1	147	1.51e-11	65.9
MsaG017412	MtrunA17_Chr4g0018201	24.793	242	142	7	9	218	759	992	1.65e-11	66.6
MsaG017412	MtrunA17_Chr0c02g0489761	26.977	215	141	5	5	213	74	278	1.66e-11	66.2
MsaG017412	MtrunA17_Chr3g0098951	24.793	242	151	7	9	238	84	306	1.92e-11	65.9
MsaG017412	MtrunA17_Chr5g0428981	24.793	242	142	7	9	218	763	996	1.94e-11	66.2
MsaG017412	MtrunA17_Chr7g0256001	27.570	214	137	5	9	213	141	345	2.42e-11	65.5
MsaG017412	MtrunA17_Chr5g0407121	31.250	144	87	5	5	136	34	177	2.55e-11	65.1
MsaG017412	MtrunA17_Chr5g0444171	24.885	217	135	6	9	213	92	292	2.82e-11	65.5
MsaG017412	MtrunA17_Chr3g0123491	25.523	239	134	8	8	214	92	318	3.57e-11	64.7
MsaG017412	MtrunA17_Chr3g0107051	26.484	219	135	8	7	214	19	222	3.88e-11	64.7
MsaG017412	MtrunA17_Chr5g0448721	26.360	239	151	7	9	238	96	318	4.54e-11	64.7
MsaG017412	MtrunA17_Chr3g0139371	25.316	237	134	8	8	214	73	296	6.43e-11	63.9
MsaG017412	MtrunA17_Chr3g0131861	29.245	212	115	7	14	209	102	294	7.19e-11	63.9
MsaG017412	MtrunA17_Chr8g0387671	26.540	211	139	5	9	213	66	266	9.88e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017412	AT4G28880.3	60.748	428	147	5	1	424	1	411	0.0	524
MsaG017412	AT4G28880.2	60.748	428	147	5	1	424	1	411	0.0	524
MsaG017412	AT4G28880.1	60.748	428	147	5	1	424	1	411	0.0	524
MsaG017412	AT4G28880.4	60.748	428	147	5	1	424	1	411	0.0	524
MsaG017412	AT4G28860.1	60.047	428	151	5	1	427	1	409	0.0	520
MsaG017412	AT4G28860.2	73.270	318	85	0	1	318	1	318	0.0	514
MsaG017412	AT4G26100.1	56.867	415	145	8	1	407	1	389	1.77e-167	478
MsaG017412	AT1G72710.1	66.159	328	109	2	1	327	1	327	8.91e-165	471
MsaG017412	AT5G57015.1	66.154	325	108	1	1	323	1	325	9.58e-165	470
MsaG017412	AT5G44100.1	71.044	297	86	0	1	297	1	297	5.82e-163	467
MsaG017412	AT5G44100.2	71.044	297	86	0	1	297	1	297	5.82e-163	467
MsaG017412	AT1G03930.1	69.024	297	92	0	1	297	1	297	1.04e-161	464
MsaG017412	AT3G23340.1	66.562	320	106	1	1	320	1	319	1.08e-161	463
MsaG017412	AT4G28540.1	69.799	298	90	0	1	298	5	302	1.55e-161	464
MsaG017412	AT2G19470.1	68.092	304	97	0	1	304	1	304	1.58e-161	462
MsaG017412	AT4G14340.1	56.250	400	156	4	1	399	7	388	4.59e-159	457
MsaG017412	AT4G14340.2	63.582	335	114	1	1	335	7	333	5.18e-159	453
MsaG017412	AT5G43320.1	69.360	297	91	0	1	297	1	297	3.16e-157	453
MsaG017412	AT5G43320.2	62.536	347	126	2	1	347	1	343	1.48e-156	447
MsaG017412	AT5G43320.3	62.536	347	126	2	1	347	1	343	1.48e-156	447
MsaG017412	AT1G04440.1	69.024	297	92	0	1	297	1	297	9.77e-156	449
MsaG017412	AT3G23340.2	62.813	320	104	2	1	320	1	305	4.35e-148	428
MsaG017412	AT4G08800.1	60.204	294	85	2	1	294	1	262	2.85e-129	374
MsaG017412	AT2G25760.2	36.786	280	162	4	9	273	107	386	2.40e-55	194
MsaG017412	AT2G25760.1	37.143	280	158	5	9	273	107	383	6.90e-55	193
MsaG017412	AT3G13670.1	34.948	289	169	6	5	277	131	416	3.53e-53	189
MsaG017412	AT3G03940.1	36.525	282	163	6	9	277	140	418	3.50e-52	186
MsaG017412	AT5G18190.2	35.563	284	167	6	9	279	130	410	1.08e-50	182
MsaG017412	AT5G18190.1	35.563	284	167	6	9	279	130	410	1.08e-50	182
MsaG017412	AT3G50530.1	28.111	217	138	5	6	213	145	352	3.57e-15	78.2
MsaG017412	AT1G54960.1	28.440	218	133	6	8	213	67	273	7.74e-15	77.0
MsaG017412	AT1G54960.2	28.440	218	133	6	8	213	67	273	7.74e-15	77.0
MsaG017412	AT3G49370.1	29.358	218	136	6	7	215	140	348	3.14e-14	75.1
MsaG017412	AT4G36070.2	27.230	213	139	5	8	213	70	273	3.68e-14	74.7
MsaG017412	AT4G36070.1	27.230	213	139	5	8	213	70	273	4.09e-14	74.7
MsaG017412	AT2G17890.1	26.761	213	140	5	8	213	107	310	4.50e-14	74.7
MsaG017412	AT5G24430.1	29.224	219	135	6	7	215	141	349	7.45e-14	73.9
MsaG017412	AT1G09000.2	28.571	217	132	6	9	213	69	274	9.61e-14	73.6
MsaG017412	AT1G09000.1	28.571	217	132	6	9	213	69	274	1.07e-13	73.6
MsaG017412	AT1G67580.1	30.811	185	115	6	8	182	405	586	2.79e-13	72.4
MsaG017412	AT1G67580.2	30.811	185	115	6	8	182	405	586	2.79e-13	72.4
MsaG017412	AT3G57530.2	26.047	215	143	6	5	213	59	263	4.28e-13	71.2
MsaG017412	AT3G50530.2	27.083	240	142	8	6	213	145	383	5.69e-13	71.2
MsaG017412	AT1G74740.1	28.931	159	106	4	5	157	55	212	6.14e-13	70.9
MsaG017412	AT5G12480.1	25.806	217	135	7	8	213	58	259	6.47e-13	70.9
MsaG017412	AT3G08730.1	24.569	232	158	5	4	229	128	348	9.23e-13	70.1
MsaG017412	AT3G08730.2	24.569	232	158	5	4	229	128	348	9.23e-13	70.1
MsaG017412	AT3G57530.1	29.221	154	102	4	5	152	59	211	1.09e-12	70.1
MsaG017412	AT5G19450.2	26.852	216	132	7	9	213	57	257	1.09e-12	70.1
MsaG017412	AT5G19450.1	26.852	216	132	7	9	213	57	257	1.09e-12	70.1
MsaG017412	AT2G41860.1	25.943	212	141	6	8	213	53	254	1.11e-12	70.1
MsaG017412	AT2G46700.1	25.664	226	132	5	6	213	140	347	1.19e-12	70.1
MsaG017412	AT1G12580.1	25.210	238	157	6	8	238	43	266	1.21e-12	70.1
MsaG017412	AT2G41860.2	25.943	212	141	6	8	213	53	254	1.83e-12	69.3
MsaG017412	AT2G32510.1	26.154	260	166	7	1	255	1	239	2.29e-12	68.6
MsaG017412	AT5G66210.3	27.064	218	131	6	9	213	62	264	2.97e-12	68.6
MsaG017412	AT2G35890.2	26.360	239	151	7	9	238	132	354	3.10e-12	68.9
MsaG017412	AT2G35890.1	26.360	239	151	7	9	238	132	354	3.10e-12	68.9
MsaG017412	AT4G32660.2	28.085	235	130	6	8	214	70	293	3.31e-12	67.8
MsaG017412	AT4G32660.3	28.085	235	130	6	8	214	62	285	3.64e-12	68.2
MsaG017412	AT4G32660.1	28.085	235	130	6	8	214	70	293	3.83e-12	68.2
MsaG017412	AT3G23000.1	26.941	219	139	8	4	213	20	226	4.02e-12	68.2
MsaG017412	AT5G66210.5	27.064	218	131	6	9	213	62	264	4.06e-12	68.2
MsaG017412	AT5G66210.1	27.064	218	131	6	9	213	62	264	4.60e-12	68.2
MsaG017412	AT5G66210.2	27.064	218	131	6	9	213	62	264	4.60e-12	68.2
MsaG017412	AT4G21940.3	26.147	218	131	7	9	213	102	302	4.79e-12	68.2
MsaG017412	AT4G23650.1	27.700	213	138	6	9	215	78	280	5.21e-12	68.2
MsaG017412	AT5G66210.6	27.064	218	131	6	9	213	62	264	5.26e-12	67.8
MsaG017412	AT5G66210.4	27.064	218	131	6	9	213	62	264	5.26e-12	67.8
MsaG017412	AT1G18890.1	26.818	220	135	7	5	213	59	263	5.44e-12	68.2
MsaG017412	AT4G21940.1	26.147	218	131	7	9	213	102	302	7.19e-12	67.8
MsaG017412	AT4G21940.2	26.147	218	131	7	9	213	102	302	7.20e-12	67.8
MsaG017412	AT3G20410.2	26.496	234	141	8	9	230	91	305	1.45e-11	66.6
MsaG017412	AT3G20410.1	26.496	234	141	8	9	230	91	305	1.45e-11	66.6
MsaG017412	AT3G17850.1	24.419	258	151	7	9	233	882	1128	1.49e-11	67.0
MsaG017412	AT4G10010.2	29.469	207	121	8	14	209	161	353	2.83e-11	65.9
MsaG017412	AT1G33770.1	26.354	277	160	11	14	277	146	391	3.15e-11	65.9
MsaG017412	AT5G64960.1	25.506	247	142	8	9	230	26	255	3.60e-11	65.5
MsaG017412	AT1G49580.1	26.977	215	139	5	8	213	149	354	4.18e-11	65.5
MsaG017412	AT1G45160.2	27.059	255	144	9	9	233	670	912	4.97e-11	65.5
MsaG017412	AT5G63370.5	27.442	215	127	7	8	207	296	496	5.00e-11	65.1
MsaG017412	AT5G63370.10	27.442	215	127	7	8	207	296	496	5.00e-11	65.1
MsaG017412	AT1G45160.1	27.059	255	144	9	9	233	670	912	5.11e-11	65.5
MsaG017412	AT2G31500.1	27.189	217	132	7	8	213	65	266	5.16e-11	65.1
MsaG017412	AT5G63370.7	27.488	211	132	7	8	207	296	496	5.33e-11	65.1
MsaG017412	AT5G63370.8	27.488	211	132	7	8	207	296	496	5.33e-11	65.1
MsaG017412	AT5G63370.4	27.488	211	132	7	8	207	296	496	5.33e-11	65.1
MsaG017412	AT5G63370.6	27.488	211	132	7	8	207	296	496	5.33e-11	65.1
MsaG017412	AT5G63370.1	27.488	211	132	7	8	207	296	496	5.33e-11	65.1
MsaG017412	AT1G76040.3	27.801	241	143	8	9	237	112	333	5.49e-11	64.7
MsaG017412	AT5G63370.2	27.488	211	132	7	8	207	162	362	6.06e-11	64.7
MsaG017412	AT5G63370.3	27.488	211	132	7	8	207	162	362	6.06e-11	64.7
MsaG017412	AT5G63370.9	27.442	215	127	7	8	207	162	362	6.53e-11	64.3
MsaG017412	AT3G19100.1	25.581	215	142	5	8	213	143	348	6.56e-11	64.7
MsaG017412	AT3G56760.1	27.826	230	142	6	9	223	124	344	6.63e-11	64.7
MsaG017412	AT1G76040.2	27.801	241	143	8	9	237	112	333	8.33e-11	64.3
MsaG017412	AT4G04720.2	24.885	217	135	6	9	213	80	280	8.73e-11	64.3
MsaG017412	AT4G04720.1	24.885	217	135	6	9	213	80	280	8.73e-11	64.3

Find 99 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAAGTTCCTGTGGGCCTTTC+AGG	0.062348	3:-108986486	None:intergenic
TCAAACCTAGGTCGTGTATT+TGG	0.098979	3:+108986507	MsaT017412.1:CDS
AGGAATATGCTTGCTTGTTT+TGG	0.195324	3:-108983223	None:intergenic
TATTCTGGTTATGGATCTTC+TGG	0.212846	3:+108982626	MsaT017412.1:CDS
TTTGATCAAGATCCAGATTA+TGG	0.217415	3:+108984756	MsaT017412.1:CDS
TTGGAGAAGACTGTATAATT+TGG	0.243957	3:-108982453	None:intergenic
GAATCCAGCTGCTTGAAATA+TGG	0.275973	3:-108986539	None:intergenic
CAAGCAAGCATATTCCTTAT+AGG	0.278492	3:+108983229	MsaT017412.1:CDS
ATAACTTCCTAATGGGTATT+AGG	0.293154	3:+108983021	MsaT017412.1:CDS
AGAGAGAATAAAAGTTTAAC+AGG	0.303019	3:+108984020	MsaT017412.1:intron
CAAACCTAGGTCGTGTATTT+GGG	0.321394	3:+108986508	MsaT017412.1:CDS
TCATTTGGTGAAATTTATAT+AGG	0.322821	3:+108981803	MsaT017412.1:CDS
GCAAAGTCGCCGTGATGATT+TGG	0.329153	3:+108984166	MsaT017412.1:CDS
ATACCCATTAGGAAGTTATC+TGG	0.331317	3:-108983017	None:intergenic
TAGGTTTATATTATTGATTT+CGG	0.339874	3:+108983177	MsaT017412.1:intron
TGATGGAGATCATAATATTC+TGG	0.354764	3:+108982611	MsaT017412.1:CDS
AAAATCGGAAGCGGTTCATT+TGG	0.355035	3:+108981788	MsaT017412.1:CDS
GGATCTTCTGGGACGTAGTC+TGG	0.355238	3:+108982638	MsaT017412.1:CDS
AGCATTTAGATTCTTTAGAT+TGG	0.357090	3:-108986179	None:intergenic
CAAACCAGATAACTTCCTAA+TGG	0.358154	3:+108983013	MsaT017412.1:CDS
CGCTTTAAGAATCCATAATC+TGG	0.362175	3:-108984768	None:intergenic
GTCCTTATGTACTTCTTAAG+AGG	0.366081	3:+108984203	MsaT017412.1:CDS
AACAACAAAATATACCTATA+AGG	0.367234	3:-108983243	None:intergenic
CGTGATGATTTGGAGTCTAT+TGG	0.367974	3:+108984176	MsaT017412.1:CDS
AGATCATAATATTCTGGTTA+TGG	0.373211	3:+108982617	MsaT017412.1:CDS
TGAGGTCGTTGCCGTCAAAA+TGG	0.379560	3:+108981933	MsaT017412.1:CDS
TTTAAGATTGGTCGCAAAAT+CGG	0.381240	3:+108981773	MsaT017412.1:CDS
TATATTATTGATTTCGGACT+AGG	0.399991	3:+108983183	MsaT017412.1:CDS
CACATTTGGACGATCAAGAT+TGG	0.402023	3:-108986137	None:intergenic
TTAGGCTGCACACGCACATT+TGG	0.429031	3:-108986151	None:intergenic
AAACCAGATAACTTCCTAAT+GGG	0.430261	3:+108983014	MsaT017412.1:CDS
TTTATAACTTACTTTCTCCT+TGG	0.432685	3:-108982472	None:intergenic
GTAGAAGAAATTCAGAAAGA+AGG	0.436062	3:-108986561	None:intergenic
AATCCAGCTGCTTGAAATAT+GGG	0.440658	3:-108986538	None:intergenic
ACTCCCATATTTCAAGCAGC+TGG	0.449190	3:+108986535	MsaT017412.1:CDS
TGCTCCCGCAGAAGACAAAA+AGG	0.451965	3:-108982665	None:intergenic
TTTAGATTCTTTAGATTGGA+TGG	0.456240	3:-108986175	None:intergenic
GTTGGCGGAAAGTTTAAGAT+TGG	0.473575	3:+108981761	MsaT017412.1:CDS
ATTCTGGTTATGGATCTTCT+GGG	0.476383	3:+108982627	MsaT017412.1:CDS
ACTATGACAATTTATTCGAC+TGG	0.479555	3:+108985368	MsaT017412.1:CDS
TGCAATACTCACTTAGGAAT+CGG	0.487644	3:+108984062	MsaT017412.1:CDS
TTCTTTAGATTGGATGGCTT+AGG	0.488699	3:-108986169	None:intergenic
TTCCTCTTAAGAAGTACATA+AGG	0.490195	3:-108984205	None:intergenic
CAGTCTACAACCAGTGGTTG+TGG	0.500770	3:+108985631	MsaT017412.1:CDS
GTACCGCACCATCTCATAGT+TGG	0.509024	3:-108982588	None:intergenic
TCTAAATGCTAAGAATCATA+CGG	0.510015	3:+108986192	MsaT017412.1:CDS
CGTGAGTTGTTCACTCGTGA+AGG	0.516158	3:+108984798	MsaT017412.1:CDS
AATAGAGTACATGCATTCCA+AGG	0.528223	3:+108982971	MsaT017412.1:CDS
GCATCCACAACTATTGTATG+AGG	0.532224	3:+108982430	MsaT017412.1:CDS
GCAAGTTGCAATACTCACTT+AGG	0.533425	3:+108984056	MsaT017412.1:CDS
AACATGGAGTGGGTCGTTGG+CGG	0.534619	3:+108981746	None:intergenic
ACCTAGGTTTGAAGTTCCTG+TGG	0.540684	3:-108986496	None:intergenic
TATTAGGAGAAAATCAAGTC+AGG	0.540941	3:+108983037	MsaT017412.1:CDS
TTGGCCTCATACAATAGTTG+TGG	0.548570	3:-108982434	None:intergenic
CAATGATCCGTCCACTTCAT+CGG	0.549710	3:+108986428	MsaT017412.1:CDS
TTATGTACTTCTTAAGAGGA+AGG	0.553282	3:+108984207	MsaT017412.1:CDS
CTTTCAGACCCTGCCAAGGA+AGG	0.558293	3:-108984356	None:intergenic
ATGAGATGGTGCGGTACTGA+TGG	0.560221	3:+108982594	MsaT017412.1:CDS
AACAACATGGAGTGGGTCGT+TGG	0.562685	3:+108981743	None:intergenic
TTTGATGTTAGCAGACCAGA+TGG	0.566646	3:+108982707	MsaT017412.1:CDS
TGTAGGAGAAGAAGAGAACA+AGG	0.572961	3:+108982408	MsaT017412.1:intron
CTAAATGCTAAGAATCATAC+GGG	0.574445	3:+108986193	MsaT017412.1:CDS
GAATAAAAGTTTAACAGGGA+CGG	0.577039	3:+108984025	MsaT017412.1:CDS
TTTGGGCAAAGCCGATGAAG+TGG	0.584387	3:-108986439	None:intergenic
TCTAAGCCTGAAAGGCCCAC+AGG	0.585651	3:+108986480	MsaT017412.1:CDS
GCACTAGGTACGGCATCTGA+AGG	0.595661	3:-108985587	None:intergenic
TATTCCCAAATACACGACCT+AGG	0.597805	3:-108986512	None:intergenic
AAAGTAAGACGCAAACTCCA+CGG	0.599632	3:-108984712	None:intergenic
CATCCGCTAACAACATGGAG+TGG	0.601509	3:+108981735	None:intergenic
AAGTAAGACGCAAACTCCAC+GGG	0.604948	3:-108984711	None:intergenic
CCTAGGTTTGAAGTTCCTGT+GGG	0.606084	3:-108986495	None:intergenic
ACTAGGAACAGCACTAGGTA+CGG	0.607129	3:-108985597	None:intergenic
ACCACTGGTTGTAGACTGCT+AGG	0.607910	3:-108985626	None:intergenic
ATCAGCAGACGCAACAGACA+AGG	0.613053	3:+108985404	MsaT017412.1:CDS
ATCCGCTAACAACATGGAGT+GGG	0.614583	3:+108981736	None:intergenic
TGGATCTTGATCAAATGTCA+AGG	0.615184	3:-108984748	None:intergenic
GTGGTATTCCAACTATGAGA+TGG	0.615515	3:+108982580	MsaT017412.1:CDS
AGACTGCTAGGCACAGCACT+AGG	0.616647	3:-108985614	None:intergenic
AAGGAGACAAAAGCAATCAT+CGG	0.624317	3:+108985423	MsaT017412.1:CDS
ATTGGTCGCAAAATCGGAAG+CGG	0.626522	3:+108981779	MsaT017412.1:CDS
CTCAGAGGTGTCCATATCAG+AGG	0.626948	3:-108981914	None:intergenic
GGCAAAGCCGATGAAGTGGA+CGG	0.627991	3:-108986435	None:intergenic
AAAATGTCTCTAAGCCTGAA+AGG	0.629959	3:+108986472	MsaT017412.1:CDS
CCCACAGGAACTTCAAACCT+AGG	0.637853	3:+108986495	MsaT017412.1:CDS
AAATTATACAGTCTTCTCCA+AGG	0.638640	3:+108982455	MsaT017412.1:CDS
GCCTAGCAGTCTACAACCAG+TGG	0.640292	3:+108985625	MsaT017412.1:CDS
ACAGCTTTCAGACCCTGCCA+AGG	0.644712	3:-108984360	None:intergenic
ATTGAAAATGTATACCTCAG+TGG	0.646544	3:-108984433	None:intergenic
TCTTCTGGGACGTAGTCTGG+AGG	0.649427	3:+108982641	MsaT017412.1:CDS
TCTGAAAGCTGTCACCAAAG+AGG	0.650261	3:+108984371	MsaT017412.1:CDS
ACAGCACTAGGAACAGCACT+AGG	0.656993	3:-108985602	None:intergenic
ATAGAGTACATGCATTCCAA+GGG	0.660373	3:+108982972	MsaT017412.1:CDS
GCTTTGCGAATCATATCCCG+TGG	0.663642	3:+108984695	MsaT017412.1:CDS
CTCTGATATGGACACCTCTG+AGG	0.669495	3:+108981915	MsaT017412.1:CDS
CAATAGACTCCAAATCATCA+CGG	0.670210	3:-108984175	None:intergenic
ATTCCAACTATGAGATGGTG+CGG	0.673968	3:+108982585	MsaT017412.1:CDS
GAGAGAATAAAAGTTTAACA+GGG	0.702224	3:+108984021	MsaT017412.1:intron
TTTGACGGCAACGACCTCAG+AGG	0.711927	3:-108981929	None:intergenic
GAAGTTATCAACTTCCACTG+AGG	0.761442	3:+108984419	MsaT017412.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	108981749	108986572	108981749	ID=MsaG017412
Chr3	mRNA	108981749	108986572	108981749	ID=MsaT017412.1;Parent=MsaG017412
Chr3	exon	108981749	108981824	108981749	ID=MsaT017412.1.exon1;Parent=MsaT017412.1
Chr3	CDS	108981749	108981824	108981749	ID=cds.MsaT017412.1;Parent=MsaT017412.1
Chr3	exon	108981914	108981954	108981914	ID=MsaT017412.1.exon2;Parent=MsaT017412.1
Chr3	CDS	108981914	108981954	108981914	ID=cds.MsaT017412.1;Parent=MsaT017412.1
Chr3	exon	108982413	108982482	108982413	ID=MsaT017412.1.exon3;Parent=MsaT017412.1
Chr3	CDS	108982413	108982482	108982413	ID=cds.MsaT017412.1;Parent=MsaT017412.1
Chr3	exon	108982580	108982728	108982580	ID=MsaT017412.1.exon4;Parent=MsaT017412.1
Chr3	CDS	108982580	108982728	108982580	ID=cds.MsaT017412.1;Parent=MsaT017412.1
Chr3	exon	108982963	108983058	108982963	ID=MsaT017412.1.exon5;Parent=MsaT017412.1
Chr3	CDS	108982963	108983058	108982963	ID=cds.MsaT017412.1;Parent=MsaT017412.1
Chr3	exon	108983180	108983250	108983180	ID=MsaT017412.1.exon6;Parent=MsaT017412.1
Chr3	CDS	108983180	108983250	108983180	ID=cds.MsaT017412.1;Parent=MsaT017412.1
Chr3	exon	108984022	108984083	108984022	ID=MsaT017412.1.exon7;Parent=MsaT017412.1
Chr3	CDS	108984022	108984083	108984022	ID=cds.MsaT017412.1;Parent=MsaT017412.1
Chr3	exon	108984165	108984228	108984165	ID=MsaT017412.1.exon8;Parent=MsaT017412.1
Chr3	CDS	108984165	108984228	108984165	ID=cds.MsaT017412.1;Parent=MsaT017412.1
Chr3	exon	108984356	108984440	108984356	ID=MsaT017412.1.exon9;Parent=MsaT017412.1
Chr3	CDS	108984356	108984440	108984356	ID=cds.MsaT017412.1;Parent=MsaT017412.1
Chr3	exon	108984693	108984819	108984693	ID=MsaT017412.1.exon10;Parent=MsaT017412.1
Chr3	CDS	108984693	108984819	108984693	ID=cds.MsaT017412.1;Parent=MsaT017412.1
Chr3	exon	108985362	108985444	108985362	ID=MsaT017412.1.exon11;Parent=MsaT017412.1
Chr3	CDS	108985362	108985444	108985362	ID=cds.MsaT017412.1;Parent=MsaT017412.1
Chr3	exon	108985587	108985665	108985587	ID=MsaT017412.1.exon12;Parent=MsaT017412.1
Chr3	CDS	108985587	108985665	108985587	ID=cds.MsaT017412.1;Parent=MsaT017412.1
Chr3	exon	108986095	108986222	108986095	ID=MsaT017412.1.exon13;Parent=MsaT017412.1
Chr3	CDS	108986095	108986222	108986095	ID=cds.MsaT017412.1;Parent=MsaT017412.1
Chr3	exon	108986420	108986572	108986420	ID=MsaT017412.1.exon14;Parent=MsaT017412.1
Chr3	CDS	108986420	108986572	108986420	ID=cds.MsaT017412.1;Parent=MsaT017412.1

Gene Sequence

>MsaT017412.1

ATGGAGTGGGTCGTTGGCGGAAAGTTTAAGATTGGTCGCAAAATCGGAAGCGGTTCATTTGGTGAAATTTATATAGCCTCTGATATGGACACCTCTGAGGTCGTTGCCGTCAAAATGGAGAAGAAGAGAACAAGGCATCCACAACTATTGTATGAGGCCAAATTATACAGTCTTCTCCAAGGAGAAAGTGGTATTCCAACTATGAGATGGTGCGGTACTGATGGAGATCATAATATTCTGGTTATGGATCTTCTGGGACGTAGTCTGGAGGACCTTTTTGTCTTCTGCGGGAGCAAGTTTACTTTAAAAACAGTTTTGATGTTAGCAGACCAGATGCTTTCGAGAATAGAGTACATGCATTCCAAGGGATTTTTACATAGAGACATCAAACCAGATAACTTCCTAATGGGTATTAGGAGAAAATCAAGTCAGGTTTATATTATTGATTTCGGACTAGGAAAAAGATACCGGGACCCCAAAACAAGCAAGCATATTCCTTATAGAGAGAATAAAAGTTTAACAGGGACGGCACGATATGCAAGTTGCAATACTCACTTAGGAATCGAGCAAAGTCGCCGTGATGATTTGGAGTCTATTGGCTATGTCCTTATGTACTTCTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGAAAGCTGTCACCAAAGAGGAAAAATATGACAAGATTCGTGAGAAGAAGTTATCAACTTCCACTGAGAAGCTTTGCGAATCATATCCCGTGGAGTTTGCGTCTTACTTTCATTATTGTCGCTCCTTGACATTTGATCAAGATCCAGATTATGGATTCTTAAAGCGTCTGTTTCGTGAGTTGTTCACTCGTGAAGGATATGACTATGACAATTTATTCGACTGGACCATCCTAAAATATCAGCAGACGCAACAGACAAGGAGACAAAAGCAATCATCGCCTTCAGATGCCGTACCTAGTGCTGTTCCTAGTGCTGTGCCTAGCAGTCTACAACCAGTGGTTGTGGAAAAACATACAGGAATCAATAATTCACCTCAAGTTACTGTAACAAAACTGCTAACCAATCTTGATCGTCCAAATGTGCGTGTGCAGCCTAAGCCATCCAATCTAAAGAATCTAAATGCTAAGAATCATACGGGAAAACATAATGTGAACAATGATCCGTCCACTTCATCGGCTTTGCCCAAATCAACTGCAGAAAATGTCTCTAAGCCTGAAAGGCCCACAGGAACTTCAAACCTAGGTCGTGTATTTGGGAATAACTCCCATATTTCAAGCAGCTGGATTCCTTCTTTCTGA

Protein sequence

>MsaT017412.1

MEWVVGGKFKIGRKIGSGSFGEIYIASDMDTSEVVAVKMEKKRTRHPQLLYEAKLYSLLQGESGIPTMRWCGTDGDHNILVMDLLGRSLEDLFVFCGSKFTLKTVLMLADQMLSRIEYMHSKGFLHRDIKPDNFLMGIRRKSSQVYIIDFGLGKRYRDPKTSKHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLESIGYVLMYFLRGSLPWQGLKAVTKEEKYDKIREKKLSTSTEKLCESYPVEFASYFHYCRSLTFDQDPDYGFLKRLFRELFTREGYDYDNLFDWTILKYQQTQQTRRQKQSSPSDAVPSAVPSAVPSSLQPVVVEKHTGINNSPQVTVTKLLTNLDRPNVRVQPKPSNLKNLNAKNHTGKHNVNNDPSTSSALPKSTAENVSKPERPTGTSNLGRVFGNNSHISSSWIPSF*