AlfalfaGEDB | MsaG017433

M. sativa ssp. caerulea / MsaG017433

KEGG: K11644
GO: GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017433	XP_003613438.2	97.436	39	1	0	42	80	46	84	1.73e-15	80.9

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017433	sp\|O04539\|SNL4_ARATH	81.579	38	7	0	42	79	17	54	2.17e-13	66.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017433	tr\|G7K6W4\|G7K6W4_MEDTR	97.436	39	1	0	42	80	46	84	8.25e-16	80.9

TFs/TRs:

Gene ID	Type	Classification
MsaG017433	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG017433	MsaG017434	0.825075	1.013151e-53	2.553889e-51

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017433	MtrunA17_Chr5g0415031	97.436	39	1	0	42	80	46	84	1.59e-19	80.9
MsaG017433	MtrunA17_Chr8g0364231	71.795	39	11	0	42	80	45	83	5.80e-14	65.1
MsaG017433	MtrunA17_Chr1g0206771	56.364	55	21	1	28	79	2	56	2.82e-12	58.9
MsaG017433	MtrunA17_Chr6g0452001	71.053	38	11	0	42	79	66	103	4.20e-12	59.7
MsaG017433	MtrunA17_Chr1g0206781	61.538	39	15	0	42	80	14	52	1.39e-11	55.8
MsaG017433	MtrunA17_Chr1g0205811	64.103	39	14	0	42	80	17	55	4.30e-11	54.3
MsaG017433	MtrunA17_Chr6g0452021	65.789	38	13	0	42	79	46	83	5.67e-11	56.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017433	AT1G59890.2	83.784	37	6	0	43	79	49	85	2.07e-14	66.6
MsaG017433	AT1G70060.2	81.579	38	7	0	42	79	17	54	2.20e-14	66.6
MsaG017433	AT1G70060.1	81.579	38	7	0	42	79	17	54	2.20e-14	66.6
MsaG017433	AT1G59890.1	83.784	37	6	0	43	79	49	85	2.49e-14	66.6
MsaG017433	AT1G59890.3	83.784	37	6	0	43	79	49	85	2.62e-14	66.2
MsaG017433	AT1G59890.4	83.784	37	6	0	43	79	49	85	3.37e-14	66.2
MsaG017433	AT1G10450.3	52.174	69	30	2	15	80	57	125	4.35e-14	65.9
MsaG017433	AT1G10450.2	52.174	69	30	2	15	80	6	74	4.98e-14	65.5
MsaG017433	AT1G10450.1	52.174	69	30	2	15	80	6	74	4.98e-14	65.5
MsaG017433	AT1G24190.3	73.684	38	10	0	42	79	17	54	2.12e-12	60.8
MsaG017433	AT1G24190.1	73.684	38	10	0	42	79	17	54	2.25e-12	60.8
MsaG017433	AT1G24190.2	73.684	38	10	0	42	79	17	54	2.41e-12	60.8
MsaG017433	AT3G01320.2	68.421	38	12	0	42	79	60	97	4.33e-12	60.1
MsaG017433	AT3G01320.1	68.421	38	12	0	42	79	60	97	4.37e-12	60.1
MsaG017433	AT5G15020.2	53.061	49	23	0	31	79	44	92	3.05e-11	57.8
MsaG017433	AT5G15020.1	53.061	49	23	0	31	79	44	92	3.05e-11	57.8
MsaG017433	AT5G15025.1	68.421	38	12	0	42	79	50	87	3.36e-11	55.1

Find 10 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAATGTGCCTTCTTATTTGA+AGG	0.371628	3:-109226843	MsaT017433.1:intron
TTAATCAAACCTGAGATTGT+TGG	0.433476	3:+109226243	None:intergenic
GCTGATGGAGCTGTGGACTT+TGG	0.439632	3:-109226871	None:intergenic
ATTAACGTGCCAACAATCTC+AGG	0.477289	3:-109226252	MsaT017433.1:intron
AACAATACCTTCAAATAAGA+AGG	0.490879	3:+109226836	None:intergenic
AGACAAGAAGGAAAAGTATG+AGG	0.539440	3:-109226019	MsaT017433.1:CDS
AGCATATCTCAAGGCGATCA+AGG	0.551355	3:-109226052	MsaT017433.1:CDS
TTCAGGGATTGATTCTAATG+TGG	0.588863	3:-109226313	MsaT017433.1:intron
TGATGTTGTAGCATATCTCA+AGG	0.606029	3:-109226061	MsaT017433.1:intron
ATTTGTAGAGTTGATACTGA+TGG	0.633224	3:-109225870	MsaT017433.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	109225857	109226889	109225857	ID=MsaG017433
Chr3	mRNA	109225857	109226889	109225857	ID=MsaT017433.1;Parent=MsaG017433
Chr3	exon	109225857	109225884	109225857	ID=MsaT017433.1.exon4;Parent=MsaT017433.1
Chr3	CDS	109225857	109225884	109225857	ID=cds.MsaT017433.1;Parent=MsaT017433.1
Chr3	exon	109225982	109226072	109225982	ID=MsaT017433.1.exon3;Parent=MsaT017433.1
Chr3	CDS	109225982	109226072	109225982	ID=cds.MsaT017433.1;Parent=MsaT017433.1
Chr3	exon	109226253	109226330	109226253	ID=MsaT017433.1.exon2;Parent=MsaT017433.1
Chr3	CDS	109226253	109226330	109226253	ID=cds.MsaT017433.1;Parent=MsaT017433.1
Chr3	exon	109226844	109226889	109226844	ID=MsaT017433.1.exon1;Parent=MsaT017433.1
Chr3	CDS	109226844	109226889	109226844	ID=cds.MsaT017433.1;Parent=MsaT017433.1

Gene Sequence	>MsaT017433.1 ATGGAGCTGTGGACTTTGGCTATTGAATGTGCCTTCTTATTTGAAGGGATTGATTCTAATGTGGAGTGTGAGAATCTAAATTGTTCAATGAATTGTGAAGACATTAACGTGCCAACAATCTCAGCATATCTCAAGGCGATCAAGGATATTTTTCAAGACAAGAAGGAAAAGTATGAGGACTTTTTGGAGGTTATGAAAGATTTTAAAGCACAAAGAGTTGATACTGATGGTGTCATTGAATGA
Protein sequence	>MsaT017433.1 MELWTLAIECAFLFEGIDSNVECENLNCSMNCEDINVPTISAYLKAIKDIFQDKKEKYEDFLEVMKDFKAQRVDTDGVIE*