AlfalfaGEDB | MsaG017465

M. sativa ssp. caerulea / MsaG017465

KEGG: K00924
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017465	PNY05767.1	78.861	1036	161	4	1	980	1	1034	0.0	1598

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017465	sp\|Q9SGP2\|HSL1_ARATH	37.896	979	485	20	38	932	22	961	0.0	571

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017465	tr\|A0A2K3NRW8\|A0A2K3NRW8_TRIPR	78.861	1036	161	4	1	980	1	1034	0.0	1598

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000118	MsaG017465	0.821237	7.893945e-53	1.793921e-50
MsaG000153	MsaG017465	0.814320	2.824779e-51	5.367859e-49
MsaG000187	MsaG017465	0.810392	2.018134e-50	3.479553e-48
MsaG000248	MsaG017465	0.842762	3.950342e-58	1.683412e-55
MsaG000523	MsaG017465	0.804055	4.376574e-49	6.491557e-47
MsaG000796	MsaG017465	0.804208	4.068080e-49	6.055325e-47
MsaG000798	MsaG017465	0.836491	1.659553e-56	5.813284e-54
MsaG001027	MsaG017465	0.810666	1.762098e-50	3.058314e-48
MsaG001210	MsaG017465	0.813771	3.729021e-51	6.989356e-49
MsaG001259	MsaG017465	0.800626	2.207488e-48	3.027210e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017465	MtrunA17_Chr3g0140551	84.185	1037	103	8	1	980	1	1033	0.0	1588
MsaG017465	MtrunA17_Chr6g0487061	47.200	1000	462	11	16	958	14	1004	0.0	842
MsaG017465	MtrunA17_Chr6g0487031	45.879	1007	473	15	13	956	6	1003	0.0	793
MsaG017465	MtrunA17_Chr6g0486961	45.025	995	475	13	14	952	2	980	0.0	783
MsaG017465	MtrunA17_Chr6g0478111	46.276	1007	445	18	35	956	29	1024	0.0	761
MsaG017465	MtrunA17_Chr4g0046511	38.693	964	513	19	30	932	22	968	0.0	559
MsaG017465	MtrunA17_Chr2g0324931	38.154	975	515	22	31	940	22	973	0.0	556
MsaG017465	MtrunA17_Chr6g0487021	44.556	698	343	7	11	671	4	694	2.58e-176	531
MsaG017465	MtrunA17_Chr5g0400701	34.653	1010	549	25	16	932	6	997	2.06e-173	532
MsaG017465	MtrunA17_Chr4g0017251	35.736	985	530	25	8	930	4	947	1.64e-166	513

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017465	AT5G25930.1	50.200	1000	432	14	23	971	16	1000	0.0	915
MsaG017465	AT1G28440.1	37.896	979	485	20	38	932	22	961	0.0	571
MsaG017465	AT5G65710.1	36.765	952	502	18	61	932	57	988	6.40e-178	543
MsaG017465	AT4G28490.1	36.640	988	546	20	29	951	18	990	4.21e-170	523
MsaG017465	AT1G72180.1	33.198	982	561	22	18	937	20	968	7.58e-148	464
MsaG017465	AT5G25910.1	45.596	579	294	11	23	596	16	578	3.55e-147	457
MsaG017465	AT5G25910.1	30.556	504	276	10	81	519	242	736	4.70e-39	157
MsaG017465	AT1G08590.1	32.560	1035	604	23	6	954	1	1027	2.55e-146	462
MsaG017465	AT3G49670.1	33.978	983	555	27	34	950	26	980	8.09e-145	457
MsaG017465	AT5G65700.1	33.853	963	543	26	51	946	46	981	2.59e-142	451

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Find 219 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTAGCCTGGATAAG+TGG	0.565817	3:+109508642	MsaT017465.1:CDS
AAAGTTGATGTGTACAGCTT+TGG	0.443328	3:+109509071	MsaT017465.1:CDS
AAATCCAAGTAAACAAGGTT+AGG	0.443642	3:-109507960	None:intergenic
AAATTCCAAGTAAATTATCA+TGG	0.505038	3:+109507652	MsaT017465.1:CDS
AACACCAGTTGATTCTCGGT+GGG	0.653317	3:-109508710	None:intergenic
AACTTACATTTCCAGTTACA+AGG	0.497684	3:+109509415	MsaT017465.1:CDS
AACTTGCAAAATCTCCTTTG+TGG	0.440440	3:-109509312	None:intergenic
AAGAAGAAAACATCAGTTTC+TGG	0.211746	3:+109508677	MsaT017465.1:CDS
AAGCTCCGTCACGGTGCCAC+CGG	0.507803	3:-109506515	None:intergenic
AAGGTTAGGAAGAGAAGACA+TGG	0.645450	3:-109507946	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	109506304	109509490	109506304	ID=MsaG017465
Chr3	mRNA	109506304	109509490	109506304	ID=MsaT017465.1;Parent=MsaG017465
Chr3	exon	109506304	109508727	109506304	ID=MsaT017465.1.exon1;Parent=MsaT017465.1
Chr3	CDS	109506304	109508727	109506304	ID=cds.MsaT017465.1;Parent=MsaT017465.1
Chr3	exon	109508896	109508965	109508896	ID=MsaT017465.1.exon2;Parent=MsaT017465.1
Chr3	CDS	109508896	109508965	109508896	ID=cds.MsaT017465.1;Parent=MsaT017465.1
Chr3	exon	109509042	109509490	109509042	ID=MsaT017465.1.exon3;Parent=MsaT017465.1
Chr3	CDS	109509042	109509490	109509042	ID=cds.MsaT017465.1;Parent=MsaT017465.1

Gene Sequence

>MsaT017465.1

ATGTCTAAACTACCCCTATCCATTTCAAAATTTCCATTTTCTTTCTTCTTCCTTCTAACCTTCATAATACCCTCCAAAGTAATTTCACAATCCACAACCACCGAACAAACACTCCTTCTCAATCTTAAACGTCAACTGAATAATCCACCGCCGCTTGAATCATGGAAACCGTCGCTATCTTCGCCGTGCGATTGGCCGGAGATCAATTGCACCGGTGGCACCGTGACGGAGCTTCTCCTCTTAAACAAAAACATCACCACACAGAAACTCCCTTCCATAATCTGCAACCTCAAAAACCTCACCAAGCTTGATCTCTCCAATAATTCCATTGCCGGCGAGTTTCCGACGTGGCTGCAAAACTGCTCCAATCTCCGGTACCTCGATCTCTCCCAAAACTACTTCGCTGGTCAAATCCCAAATGACATCAGCAAACTCAAATCACTCACTTACTTCAACCTCGCCGGTAACAGCTTCACCGGCGATATCCCGGCGGCGATCGGAAAACTTCAAAATCTTCAAACACTTCACCTCTTTCAAAACAATTTCAACGGAACATTCCCGAAGGAAATTGGAGACTTATCCAATCTCGAAATTCTCGGTTTAGCTTATAACTATAAGCTCAAACCAATGGCGATTCCGATTGAATTTGGAAATTTGAAGAGCTTGATATTCATGTGGATTTCACAGTGTAACTTGATTGGAAACATTCCAGAAAGTTTCGAGAATCTCACCAATCTCGAGCAGTTGGATTTATCAACGAACAATTTAACAGGAAACATACCTAGAAAATTGTTATTGCTGAAGAATTTGAATTCTTTGTTCCTTTTCCGTAATAGGTTATTTGGTGTGATACCTAATTCGGTTCAGGCTTTGAATTTGACACATATAGATTTGGCAATGAACAATTTAACTGGTGCTATACCAGAAGAATTTGGTAAGTTGCAGAATTTGATGTTTCTGCACTTGTATTCAAATCAGTTATCTGGCGAGATTCCTAGTAGTTTAGGGCTAATTCCAAATTTGAGGAATTTTAGGGTTTTTGATAATAAGCTGAATGGAACCTTGCCTTCAGAATTAGGAAGGTATTCAAAGCTTGTGGCTTTTGAAGTTTCTGAAAATCAACTAGTTGGTGGGTTGCCAGAACATTTATGTAATGGTGGTGCTTTGTTGGGTGTGATTGCTTTTTCAAATAATCTCAGTGGAAACTTGCCAAATTCGTTTGAGAATTGTGGTTCTGTTACCACTATTCAACTTTACAAGAACAGGTTTTCAGGGGAAGTTCCTTTGAGTTTGTGGAATTTGACAAAATTATCAACCTTGATGTTAAGTGATAACTTGTTTTCTGGCAAAATTCCAAGTAAATTATCATGGAACATGTCAAGACTTGAGATTAGAAACAACAACTTTTCAGGTCAGATATCTGTTGGAGTTTCTTCTGCTTTAAATTTGGTAGTTTTTGATGCAAGAAACAACACGTTCTCTGGTGAGTTACCAAGGGAATTAACGGGTTTAACACAGCTCACTACTCTCATGCTTGATGGTAATCAACTCTCTGGAACACTTCCATCGGAGATAATATCGTGGCAATCGTTGAATACTCTAACAATCTCCAGAAACAAAATTTCAGGTCAAATACCCATTGCCATGTCTTCTCTTCCTAACCTTGTTTACTTGGATTTGTCTGAAAATAACATAACTGGTGAAATCCCAGCTCAGCTAGTGAAATTGAAGTTTATTTTTCTCAACTTGTCCTCCAACAAGCTAACAGGGAACATCCCTGATGATTTTGACAACCTTGCATATGAAAATAGTTTCTTGAACAATCCTCAACTATGTGCTCATAATGAAAATCCCAACCTTTCAAGCTGCTTGACAAAAACCACACCACGCACTAGGAGCAATTCATCTTTGAAAACGAAAGTCCTTGTTGTGATTCTTGCTGTTGCAGTCATTGCGTTGTTGGGCGCAGCTTCTTTGGCCTTCTGCACTTTGAAAAAGCACTGCGGCAAAAAGCCTGTCGGGCGTAAGCTTTCAACATGGAGGCTTACCTCATTCCAGAGGCTTGATCTCACAGAAATAAATATATTCTCAAGTTTGACAGAGAATAACCTCATAGGAAGTGGAGGGTTCGGGAAAGTTTATCGGATAGCTTCAACTCGTCCCGGTGAGTACATTGCAGTAAAGAAGATTTGGAATGTCAAAGATGTGGATGACAAACTGGATAAAGAATTTATGGCTGAGGTTGAAATCTTGGGCAATATTAGGCATTCCAATATAGTGAAGCTTTTGTGTTGTTATTCAAGTGAAAGCTCCAAACTTCTTGTTTATGAATACATGGAAAATCTTAGCCTGGATAAGTGGCTGCATAGAAAGAAGAAGAAAACATCAGTTTCTGGGTTGAGTTCACCCACCGAGAATCAACTGTTGTTGGTGAAGAATGGGGAACCATACACCGCATCTGTTCTTGCAGGATCTTTCGGCTATATTCCACCAGAATATGCATATTCAACCAGGATTGATGAGAAAGTTGATGTGTACAGCTTTGGAGTTGTGCTCCTGGAGCTAGTGACAGGAAGAGAGCCTAATTATGGAGGTGAGAATGCATGCAGTCTGGTTGATTGGGCATGGCAGCATTGTAATGAAGGGAAATGTGTCACTGATGCATTTGATGAGGTTATGAGAGAAACACGTTATGCAGATGAGATGACCAAGGTCTTCAAATTAGGCCTCATGTGCACAAGCACATTACCCTCCACTAGACCTTCCACAAAGGAGATTTTGCAAGTTCTTCGTCAGTGTTGTTCTTCAAGTTCTGCACGTAAAAGAATGTCAACTGAGGTTGATATCACTCCTCTTCTTGGCAATACAACTTACATTTCCAGTTACAAGGATAGTAGTAGGACTGGAAGTGAAAAGGAAGAAAGTTGCTTATATAGTGTGTAA

Protein sequence

>MsaT017465.1

MSKLPLSISKFPFSFFFLLTFIIPSKVISQSTTTEQTLLLNLKRQLNNPPPLESWKPSLSSPCDWPEINCTGGTVTELLLLNKNITTQKLPSIICNLKNLTKLDLSNNSIAGEFPTWLQNCSNLRYLDLSQNYFAGQIPNDISKLKSLTYFNLAGNSFTGDIPAAIGKLQNLQTLHLFQNNFNGTFPKEIGDLSNLEILGLAYNYKLKPMAIPIEFGNLKSLIFMWISQCNLIGNIPESFENLTNLEQLDLSTNNLTGNIPRKLLLLKNLNSLFLFRNRLFGVIPNSVQALNLTHIDLAMNNLTGAIPEEFGKLQNLMFLHLYSNQLSGEIPSSLGLIPNLRNFRVFDNKLNGTLPSELGRYSKLVAFEVSENQLVGGLPEHLCNGGALLGVIAFSNNLSGNLPNSFENCGSVTTIQLYKNRFSGEVPLSLWNLTKLSTLMLSDNLFSGKIPSKLSWNMSRLEIRNNNFSGQISVGVSSALNLVVFDARNNTFSGELPRELTGLTQLTTLMLDGNQLSGTLPSEIISWQSLNTLTISRNKISGQIPIAMSSLPNLVYLDLSENNITGEIPAQLVKLKFIFLNLSSNKLTGNIPDDFDNLAYENSFLNNPQLCAHNENPNLSSCLTKTTPRTRSNSSLKTKVLVVILAVAVIALLGAASLAFCTLKKHCGKKPVGRKLSTWRLTSFQRLDLTEINIFSSLTENNLIGSGGFGKVYRIASTRPGEYIAVKKIWNVKDVDDKLDKEFMAEVEILGNIRHSNIVKLLCCYSSESSKLLVYEYMENLSLDKWLHRKKKKTSVSGLSSPTENQLLLVKNGEPYTASVLAGSFGYIPPEYAYSTRIDEKVDVYSFGVVLLELVTGREPNYGGENACSLVDWAWQHCNEGKCVTDAFDEVMRETRYADEMTKVFKLGLMCTSTLPSTRPSTKEILQVLRQCCSSSSARKRMSTEVDITPLLGNTTYISSYKDSSRTGSEKEESCLYSV*