AlfalfaGEDB | MsaG017470

M. sativa ssp. caerulea / MsaG017470

KEGG: K08850
GO: GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000922 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009504 GO:0009524 GO:0009987 GO:0010564 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017470	XP_013462066.1	100.000	300	0	0	1	300	1	300	0.0	623

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017470	sp\|Q9M077\|AUR1_ARATH	87.625	299	31	1	1	299	1	293	0.0	545

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017470	tr\|A0A072V349\|A0A072V349_MEDTR	100.000	300	0	0	1	300	1	300	0.0	623

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000309	MsaG017470	0.838477	5.168641e-57	1.923876e-54
MsaG000447	MsaG017470	0.806953	1.086645e-49	1.724708e-47
MsaG000889	MsaG017470	0.828968	1.199631e-54	3.370763e-52
MsaG004225	MsaG017470	0.829250	1.025808e-54	2.905343e-52
MsaG005981	MsaG017470	0.839799	2.356258e-57	9.140572e-55
MsaG006330	MsaG017470	0.812930	5.695742e-51	1.045300e-48
MsaG008425	MsaG017470	0.855323	1.318829e-61	8.620058e-59
MsaG009050	MsaG017470	0.829378	9.549373e-55	2.714834e-52
MsaG010473	MsaG017470	0.849964	4.386167e-60	2.374275e-57
MsaG010476	MsaG017470	0.801073	1.790728e-48	2.480475e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017470	MtrunA17_Chr3g0140631	100.000	300	0	0	1	300	1	300	0.0	623
MsaG017470	MtrunA17_Chr8g0351491	65.568	273	94	0	25	297	4	276	4.13e-137	389
MsaG017470	MtrunA17_Chr8g0353621	65.299	268	93	0	30	297	3	270	8.95e-135	382
MsaG017470	MtrunA17_Chr3g0125381	62.673	217	78	1	86	299	1	217	2.08e-101	296
MsaG017470	MtrunA17_Chr4g0001331	36.296	270	163	4	25	288	8	274	5.66e-54	182
MsaG017470	MtrunA17_Chr1g0173541	37.591	274	159	7	31	295	46	316	1.80e-52	179
MsaG017470	MtrunA17_Chr5g0441691	36.226	265	160	5	37	293	68	331	1.07e-51	177
MsaG017470	MtrunA17_Chr7g0274941	33.712	264	166	6	37	292	16	278	5.49e-51	170
MsaG017470	MtrunA17_Chr2g0304111	30.851	282	187	3	19	294	5	284	7.03e-51	174
MsaG017470	MtrunA17_Chr1g0200601	34.237	295	175	7	13	292	2	292	1.37e-50	174

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017470	AT4G32830.1	87.625	299	31	1	1	299	1	293	0.0	545
MsaG017470	AT2G25880.1	85.333	300	32	1	1	300	1	288	0.0	538
MsaG017470	AT2G25880.3	85.333	300	32	1	1	300	62	349	0.0	538
MsaG017470	AT2G25880.4	88.652	282	32	0	19	300	20	301	0.0	535
MsaG017470	AT2G25880.2	74.667	300	32	2	1	300	1	256	3.03e-164	457
MsaG017470	AT2G45490.1	60.563	284	112	0	17	300	2	285	1.55e-134	383
MsaG017470	AT2G45490.2	60.870	253	99	0	17	269	2	254	5.98e-119	342
MsaG017470	AT5G10930.1	35.273	275	168	5	27	294	2	273	3.42e-54	182
MsaG017470	AT5G25110.1	34.944	269	166	4	29	291	35	300	2.53e-53	181
MsaG017470	AT4G04720.2	34.653	303	180	8	7	294	45	344	2.88e-51	177

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Find 85 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGAGAACCTTCTTAT+TGG	0.231506	3:-109543550	MsaT017470.1:CDS
AAACTAACAGATGCTGGTAA+AGG	0.474053	3:-109542760	MsaT017470.1:intron
AACATTCTGATACTTATAGG+AGG	0.608292	3:-109543144	MsaT017470.1:intron
AACCTGGCTGATGAGGTCTT+TGG	0.484063	3:+109542903	None:intergenic
AACTTAAGATAGCGGACTTT+GGG	0.378591	3:-109543420	MsaT017470.1:CDS
AAGAAACGATTGGTTTAGGA+GGG	0.596930	3:+109542932	None:intergenic
AAGAACATTCTGATACTTAT+AGG	0.295087	3:-109543147	MsaT017470.1:CDS
AATCGCAGGCGGACCATGTG+CGG	0.588135	3:-109543379	MsaT017470.1:CDS
AATGTTCTTTAGCCTCAAAA+GGG	0.485271	3:+109543161	None:intergenic
ACAAACTCCTAGAACACCCT+TGG	0.573372	3:-109542713	MsaT017470.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	109542671	109544951	109542671	ID=MsaG017470
Chr3	mRNA	109542671	109544951	109542671	ID=MsaT017470.1;Parent=MsaG017470
Chr3	exon	109542671	109542772	109542671	ID=MsaT017470.1.exon9;Parent=MsaT017470.1
Chr3	CDS	109542671	109542772	109542671	ID=cds.MsaT017470.1;Parent=MsaT017470.1
Chr3	exon	109542906	109542978	109542906	ID=MsaT017470.1.exon8;Parent=MsaT017470.1
Chr3	CDS	109542906	109542978	109542906	ID=cds.MsaT017470.1;Parent=MsaT017470.1
Chr3	exon	109543145	109543262	109543145	ID=MsaT017470.1.exon7;Parent=MsaT017470.1
Chr3	CDS	109543145	109543262	109543145	ID=cds.MsaT017470.1;Parent=MsaT017470.1
Chr3	exon	109543350	109543446	109543350	ID=MsaT017470.1.exon6;Parent=MsaT017470.1
Chr3	CDS	109543350	109543446	109543350	ID=cds.MsaT017470.1;Parent=MsaT017470.1
Chr3	exon	109543543	109543638	109543543	ID=MsaT017470.1.exon5;Parent=MsaT017470.1
Chr3	CDS	109543543	109543638	109543543	ID=cds.MsaT017470.1;Parent=MsaT017470.1
Chr3	exon	109543841	109543936	109543841	ID=MsaT017470.1.exon4;Parent=MsaT017470.1
Chr3	CDS	109543841	109543936	109543841	ID=cds.MsaT017470.1;Parent=MsaT017470.1
Chr3	exon	109544040	109544186	109544040	ID=MsaT017470.1.exon3;Parent=MsaT017470.1
Chr3	CDS	109544040	109544186	109544040	ID=cds.MsaT017470.1;Parent=MsaT017470.1
Chr3	exon	109544382	109544504	109544382	ID=MsaT017470.1.exon2;Parent=MsaT017470.1
Chr3	CDS	109544382	109544504	109544382	ID=cds.MsaT017470.1;Parent=MsaT017470.1
Chr3	exon	109544901	109544951	109544901	ID=MsaT017470.1.exon1;Parent=MsaT017470.1
Chr3	CDS	109544901	109544951	109544901	ID=cds.MsaT017470.1;Parent=MsaT017470.1

Gene Sequence

>MsaT017470.1

ATGGCCATCGCAACAGAGACTCAACCTCAGCCTCATCAACAACACCATACGGCTTCTTCGGAGGTATCAGGTTCAGCTAAGGATCAAAGAAGGTGGATTCTAAATGATTTTGATATTGGAAAACCTCTTGGTAGGGGCAAATTCGGCCATGTCTATTTGGCCAGAGAAAAAACTAGTAATCATATTGTTGCGTTGAAAGTACTCTTTAAGAGCCAATTGCAACAATCCCAAGTTGAGCATCAGCTTCGCAGAGAAGTTGAAATACAGAGCCATCTCCGTCACCCTCATATCTTGCGCCTTTATGGATACTTTTATGATCAGAAACGAGTTTACTTGATTTTAGAGTATGCACCCAAAGGTGAACTTTACAAGGAATTGCAGAAATGCAAATATTTCAGTGAAAGACGTGCAGCTACTTATGTTGCATCATTGGCTCGAGCCCTTATATATTGCCATGGAAAGCATGTCATACACAGGGACATTAAACCAGAGAACCTTCTTATTGGTGCACAGGGTGAACTTAAGATAGCGGACTTTGGGTGGTCAGTGCACACATTCAATCGCAGGCGGACCATGTGCGGCACACTGGATTACCTTCCACCTGAGATGGTGGAGAGTGTAGAACATGATGCGAGTGTGGATATATGGAGCCTTGGTGTCCTTTGCTATGAGTTTCTTTATGGAGTTCCCCCTTTTGAGGCTAAAGAACATTCTGATACTTATAGGAGGATAATTCAAGTGGATCTCAAGTTCCCTCCTAAACCAATCGTTTCTTCTGCTGCCAAAGACCTCATCAGCCAGATGCTGGTAAAGGATTCCTCTGAACGACTACCATTGCACAAACTCCTAGAACACCCTTGGATTGTTCAGAATGCAGAGCCCTCCGGTATATACAGGAGCTAG

Protein sequence

>MsaT017470.1

MAIATETQPQPHQQHHTASSEVSGSAKDQRRWILNDFDIGKPLGRGKFGHVYLAREKTSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIIQVDLKFPPKPIVSSAAKDLISQMLVKDSSERLPLHKLLEHPWIVQNAEPSGIYRS*