Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017505 | XP_003603699.1 | 94.659 | 337 | 17 | 1 | 1 | 336 | 1 | 337 | 0.0 | 634 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017505 | sp|Q9LSL1|BH093_ARATH | 66.184 | 207 | 59 | 4 | 139 | 336 | 147 | 351 | 2.82e-78 | 246 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017505 | tr|G7J450|G7J450_MEDTR | 94.659 | 337 | 17 | 1 | 1 | 336 | 1 | 337 | 0.0 | 634 |
Gene ID | Type | Classification |
---|---|---|
MsaG017505 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000225 | MsaG017505 | 0.814884 | 2.122332e-51 | 4.090690e-49 |
MsaG000646 | MsaG017505 | 0.845081 | 9.512194e-59 | 4.370511e-56 |
MsaG002015 | MsaG017505 | 0.885226 | 2.103734e-71 | 4.872949e-68 |
MsaG003210 | MsaG017505 | 0.800966 | 1.882651e-48 | 2.601543e-46 |
MsaG003214 | MsaG017505 | 0.807420 | 8.664992e-50 | 1.390623e-47 |
MsaG003315 | MsaG017505 | 0.805926 | 1.785348e-49 | 2.765765e-47 |
MsaG004039 | MsaG017505 | 0.871234 | 1.629927e-66 | 1.990079e-63 |
MsaG004178 | MsaG017505 | 0.813226 | 4.907491e-51 | 9.073499e-49 |
MsaG004373 | MsaG017505 | 0.802404 | 9.577941e-49 | 1.367551e-46 |
MsaG004468 | MsaG017505 | 0.812742 | 6.257880e-51 | 1.143093e-48 |
MsaG004555 | MsaG017505 | 0.818570 | 3.193558e-52 | 6.764523e-50 |
MsaG004715 | MsaG017505 | 0.801631 | 1.378115e-48 | 1.933279e-46 |
MsaG004755 | MsaG017505 | 0.803146 | 6.740128e-49 | 9.788837e-47 |
MsaG004890 | MsaG017505 | 0.835446 | 3.045448e-56 | 1.033844e-53 |
MsaG004958 | MsaG017505 | 0.847169 | 2.585158e-59 | 1.273183e-56 |
MsaG005508 | MsaG017505 | 0.813154 | 5.089880e-51 | 9.393380e-49 |
MsaG005680 | MsaG017505 | 0.830795 | 4.323727e-55 | 1.280101e-52 |
MsaG005642 | MsaG017505 | 0.829771 | 7.674320e-55 | 2.206446e-52 |
MsaG006023 | MsaG017505 | 0.804712 | 3.197917e-49 | 4.815809e-47 |
MsaG006051 | MsaG017505 | 0.808639 | 4.780870e-50 | 7.900723e-48 |
MsaG006175 | MsaG017505 | 0.800586 | 2.249102e-48 | 3.081466e-46 |
MsaG007328 | MsaG017505 | 0.843180 | 3.061496e-58 | 1.322178e-55 |
MsaG007716 | MsaG017505 | 0.836895 | 1.310269e-56 | 4.646023e-54 |
MsaG007744 | MsaG017505 | 0.860085 | 5.187429e-63 | 4.046455e-60 |
MsaG007833 | MsaG017505 | 0.815273 | 1.740973e-51 | 3.388839e-49 |
MsaG008621 | MsaG017505 | 0.815888 | 1.271955e-51 | 2.514754e-49 |
MsaG009078 | MsaG017505 | 0.816111 | 1.135186e-51 | 2.257051e-49 |
MsaG010066 | MsaG017505 | 0.809359 | 3.357350e-50 | 5.645160e-48 |
MsaG010906 | MsaG017505 | 0.806972 | 1.076662e-49 | 1.709622e-47 |
MsaG010899 | MsaG017505 | 0.824873 | 1.130073e-53 | 2.832852e-51 |
MsaG010900 | MsaG017505 | 0.825792 | 6.866137e-54 | 1.765428e-51 |
MsaG011659 | MsaG017505 | 0.820126 | 1.416329e-52 | 3.125542e-50 |
MsaG011974 | MsaG017505 | 0.800971 | 1.878212e-48 | 2.595704e-46 |
MsaG012642 | MsaG017505 | 0.805928 | 1.783417e-49 | 2.762933e-47 |
MsaG013845 | MsaG017505 | 0.810308 | 2.102832e-50 | 3.618169e-48 |
MsaG015978 | MsaG017505 | 0.813949 | 3.409303e-51 | 6.418720e-49 |
MsaG016839 | MsaG017505 | 0.815025 | 1.975961e-51 | 3.822071e-49 |
MsaG017058 | MsaG017505 | 0.839541 | 2.748801e-57 | 1.057692e-54 |
MsaG017095 | MsaG017505 | 0.807210 | 9.593552e-50 | 1.531932e-47 |
MsaG017173 | MsaG017505 | 0.830927 | 4.015456e-55 | 1.193346e-52 |
MsaG017505 | MsaG017702 | 0.807210 | 9.593552e-50 | 1.531932e-47 |
MsaG017505 | MsaG017886 | 0.824568 | 1.332684e-53 | 3.313055e-51 |
MsaG017505 | MsaG018343 | 0.820506 | 1.160535e-52 | 2.586810e-50 |
MsaG017505 | MsaG018791 | 0.813784 | 3.705292e-51 | 6.947251e-49 |
MsaG017505 | MsaG018834 | 0.822627 | 3.774358e-53 | 8.901816e-51 |
MsaG017505 | MsaG019288 | 0.803107 | 6.865917e-49 | 9.962825e-47 |
MsaG017505 | MsaG019727 | 0.800238 | 2.646089e-48 | 3.596870e-46 |
MsaG017505 | MsaG019925 | 0.889088 | 7.252998e-73 | 2.038651e-69 |
MsaG017505 | MsaG020033 | 0.835001 | 3.941436e-56 | 1.320302e-53 |
MsaG017505 | MsaG020020 | 0.850304 | 3.526148e-60 | 1.930933e-57 |
MsaG017505 | MsaG020580 | 0.857367 | 3.335523e-62 | 2.349288e-59 |
MsaG017505 | MsaG021043 | 0.821974 | 5.341935e-53 | 1.237973e-50 |
MsaG017505 | MsaG021448 | 0.823809 | 2.005332e-53 | 4.883545e-51 |
MsaG017505 | MsaG023719 | 0.822228 | 4.666852e-53 | 1.088911e-50 |
MsaG017505 | MsaG025969 | 0.841340 | 9.353899e-58 | 3.808816e-55 |
MsaG017505 | MsaG026777 | 0.811733 | 1.036803e-50 | 1.847169e-48 |
MsaG017505 | MsaG027235 | 0.806361 | 1.447597e-49 | 2.265779e-47 |
MsaG017505 | MsaG027491 | 0.840702 | 1.372895e-57 | 5.478888e-55 |
MsaG017505 | MsaG027716 | 0.815874 | 1.281129e-51 | 2.531982e-49 |
MsaG017505 | MsaG028234 | 0.841874 | 6.773571e-58 | 2.805603e-55 |
MsaG017505 | MsaG028715 | 0.819591 | 1.875346e-52 | 4.079928e-50 |
MsaG017505 | MsaG029086 | 0.809958 | 2.500536e-50 | 4.265802e-48 |
MsaG017505 | MsaG029324 | 0.812609 | 6.689118e-51 | 1.217833e-48 |
MsaG017505 | MsaG029446 | 0.808213 | 5.887475e-50 | 9.630286e-48 |
MsaG017505 | MsaG029951 | 0.839811 | 2.339811e-57 | 9.080254e-55 |
MsaG017505 | MsaG030327 | 0.807335 | 9.027490e-50 | 1.445870e-47 |
MsaG017505 | MsaG030471 | 0.817382 | 5.907581e-52 | 1.213583e-49 |
MsaG017505 | MsaG033333 | 0.801286 | 1.620781e-48 | 2.255921e-46 |
MsaG017505 | MsaG034829 | 0.804314 | 3.866753e-49 | 5.769839e-47 |
MsaG017505 | MsaG035015 | 0.802010 | 1.152971e-48 | 1.631400e-46 |
MsaG017505 | MsaG035057 | 0.810649 | 1.776190e-50 | 3.081665e-48 |
MsaG017505 | MsaG035705 | 0.833435 | 9.690824e-56 | 3.098642e-53 |
MsaG017505 | MsaG036109 | 0.804994 | 2.793433e-49 | 4.234461e-47 |
MsaG017505 | MsaG036326 | 0.807198 | 9.650445e-50 | 1.540585e-47 |
MsaG017505 | MsaG038016 | 0.861711 | 1.672760e-63 | 1.388197e-60 |
MsaG017505 | MsaG039921 | 0.829725 | 7.873831e-55 | 2.260860e-52 |
MsaG017505 | MsaG040072 | 0.816019 | 1.189882e-51 | 2.360300e-49 |
MsaG017505 | MsaG041039 | 0.803701 | 5.179039e-49 | 7.618938e-47 |
MsaG017505 | MsaG041734 | 0.808914 | 4.178758e-50 | 6.951668e-48 |
MsaG017505 | MsaG041899 | 0.809846 | 2.642001e-50 | 4.495134e-48 |
MsaG017505 | MsaG041900 | 0.832365 | 1.782324e-55 | 5.522998e-53 |
MsaG017505 | MsaG041901 | 0.813924 | 3.452108e-51 | 6.495270e-49 |
MsaG017505 | MsaG041902 | 0.832597 | 1.562361e-55 | 4.874058e-53 |
MsaG017505 | MsaG044336 | 0.835584 | 2.811763e-56 | 9.584386e-54 |
MsaG017505 | MsaG044663 | 0.847412 | 2.219064e-59 | 1.101827e-56 |
MsaG017505 | MsaG044664 | 0.827560 | 2.611735e-54 | 7.054638e-52 |
MsaG017505 | MsaG044888 | 0.882687 | 1.803149e-70 | 3.693685e-67 |
MsaG017505 | MsaG045445 | 0.806327 | 1.471535e-49 | 2.301429e-47 |
MsaG017505 | MsaG045452 | 0.863095 | 6.309346e-64 | 5.527370e-61 |
MsaG017505 | MsaG045890 | 0.864775 | 1.904046e-64 | 1.782818e-61 |
MsaG017505 | MsaG046029 | 0.862715 | 8.252211e-64 | 7.121895e-61 |
MsaG017505 | MsaG046657 | 0.812824 | 6.005654e-51 | 1.099267e-48 |
MsaG017505 | MsaG002331 | 0.809234 | 3.570087e-50 | 5.984790e-48 |
MsaG017505 | MsaG004907 | 0.838559 | 4.924360e-57 | 1.837688e-54 |
MsaG017505 | MsaG009542 | 0.820905 | 9.404675e-53 | 2.118564e-50 |
MsaG017505 | MsaG012695 | 0.804024 | 4.440539e-49 | 6.581778e-47 |
MsaG017505 | MsaG019142 | 0.864563 | 2.216309e-64 | 2.057677e-61 |
MsaG017505 | MsaG019914 | 0.853230 | 5.267813e-61 | 3.195298e-58 |
MsaG017505 | MsaG022111 | 0.825750 | 7.025400e-54 | 1.804231e-51 |
MsaG017505 | MsaG028289 | 0.854454 | 2.349675e-61 | 1.488777e-58 |
MsaG017505 | MsaG034730 | 0.836393 | 1.757234e-56 | 6.137675e-54 |
MsaG017505 | MsaG033321 | 0.874332 | 1.515592e-67 | 2.116764e-64 |
MsaG017505 | MsaG032473 | 0.806594 | 1.293016e-49 | 2.035067e-47 |
MsaG017505 | MsaG033065 | 0.831296 | 3.261776e-55 | 9.797177e-53 |
MsaG017505 | MsaG037679 | 0.848618 | 1.035332e-59 | 5.353072e-57 |
MsaG017505 | MsaG035272 | 0.805144 | 2.599739e-49 | 3.954636e-47 |
MsaG017505 | MsaG041378 | 0.886473 | 7.186777e-72 | 1.770010e-68 |
MsaG017505 | MsaG043826 | 0.804206 | 4.072501e-49 | 6.061615e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017505 | MtrunA17_Chr3g0141091 | 94.659 | 337 | 17 | 1 | 1 | 336 | 1 | 337 | 0.0 | 634 |
MsaG017505 | MtrunA17_Chr5g0411541 | 49.275 | 345 | 146 | 11 | 1 | 336 | 1 | 325 | 4.35e-88 | 267 |
MsaG017505 | MtrunA17_Chr7g0252041 | 46.316 | 190 | 76 | 4 | 170 | 333 | 284 | 473 | 3.31e-44 | 157 |
MsaG017505 | MtrunA17_Chr3g0131691 | 45.408 | 196 | 76 | 5 | 165 | 333 | 291 | 482 | 7.38e-42 | 151 |
MsaG017505 | MtrunA17_Chr1g0211081 | 53.425 | 73 | 34 | 0 | 160 | 232 | 305 | 377 | 3.46e-18 | 85.5 |
MsaG017505 | MtrunA17_Chr1g0185621 | 32.692 | 156 | 76 | 5 | 163 | 289 | 459 | 614 | 2.06e-14 | 74.3 |
MsaG017505 | MtrunA17_Chr2g0298751 | 52.941 | 68 | 31 | 1 | 168 | 234 | 48 | 115 | 6.14e-14 | 70.5 |
MsaG017505 | MtrunA17_Chr5g0400671 | 28.571 | 175 | 108 | 4 | 168 | 326 | 150 | 323 | 1.84e-13 | 70.1 |
MsaG017505 | MtrunA17_Chr2g0280161 | 27.273 | 187 | 113 | 6 | 161 | 329 | 167 | 348 | 9.25e-13 | 68.6 |
MsaG017505 | MtrunA17_Chr4g0049331 | 26.590 | 173 | 107 | 5 | 170 | 325 | 133 | 302 | 9.86e-13 | 67.8 |
MsaG017505 | MtrunA17_Chr8g0346161 | 31.579 | 171 | 85 | 8 | 158 | 303 | 274 | 437 | 1.23e-12 | 68.6 |
MsaG017505 | MtrunA17_Chr8g0346151 | 34.706 | 170 | 82 | 9 | 158 | 302 | 262 | 427 | 1.25e-12 | 68.6 |
MsaG017505 | MtrunA17_Chr4g0028071 | 45.312 | 64 | 35 | 0 | 165 | 228 | 142 | 205 | 2.26e-12 | 67.0 |
MsaG017505 | MtrunA17_Chr2g0320291 | 30.128 | 156 | 90 | 5 | 171 | 308 | 132 | 286 | 2.27e-12 | 67.0 |
MsaG017505 | MtrunA17_Chr7g0275821 | 28.834 | 163 | 101 | 5 | 169 | 318 | 249 | 409 | 1.37e-11 | 65.1 |
MsaG017505 | MtrunA17_Chr5g0411341 | 28.814 | 177 | 95 | 6 | 159 | 306 | 478 | 652 | 1.69e-11 | 65.5 |
MsaG017505 | MtrunA17_Chr8g0365711 | 30.872 | 149 | 80 | 4 | 171 | 298 | 243 | 389 | 2.70e-11 | 64.3 |
MsaG017505 | MtrunA17_Chr7g0260841 | 42.169 | 83 | 43 | 2 | 156 | 233 | 334 | 416 | 3.70e-11 | 63.9 |
MsaG017505 | MtrunA17_Chr8g0366751 | 38.372 | 86 | 50 | 2 | 142 | 225 | 431 | 515 | 3.76e-11 | 64.3 |
MsaG017505 | MtrunA17_Chr2g0333611 | 26.531 | 196 | 125 | 6 | 144 | 325 | 20 | 210 | 5.87e-11 | 61.6 |
MsaG017505 | MtrunA17_Chr6g0468491 | 29.004 | 231 | 113 | 10 | 1 | 229 | 13 | 194 | 9.41e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017505 | AT5G65640.1 | 66.184 | 207 | 59 | 4 | 139 | 336 | 147 | 351 | 2.87e-79 | 246 |
MsaG017505 | AT5G10570.1 | 64.286 | 182 | 57 | 3 | 159 | 336 | 138 | 315 | 9.09e-71 | 223 |
MsaG017505 | AT1G12860.1 | 46.739 | 184 | 78 | 3 | 170 | 333 | 265 | 448 | 2.12e-43 | 155 |
MsaG017505 | AT3G26744.1 | 45.026 | 191 | 75 | 5 | 170 | 333 | 305 | 492 | 2.13e-40 | 148 |
MsaG017505 | AT3G26744.4 | 45.026 | 191 | 75 | 5 | 170 | 333 | 305 | 492 | 2.13e-40 | 148 |
MsaG017505 | AT3G26744.2 | 45.026 | 191 | 75 | 5 | 170 | 333 | 305 | 492 | 2.13e-40 | 148 |
MsaG017505 | AT1G12860.2 | 50.327 | 153 | 56 | 3 | 170 | 302 | 265 | 417 | 2.36e-38 | 141 |
MsaG017505 | AT3G26744.6 | 48.125 | 160 | 53 | 5 | 170 | 302 | 305 | 461 | 3.79e-35 | 134 |
MsaG017505 | AT5G65640.2 | 62.602 | 123 | 36 | 3 | 139 | 253 | 147 | 267 | 2.77e-31 | 119 |
MsaG017505 | AT2G16910.1 | 35.484 | 155 | 64 | 4 | 171 | 289 | 313 | 467 | 5.73e-19 | 88.2 |
MsaG017505 | AT4G29930.6 | 33.775 | 151 | 78 | 5 | 171 | 307 | 53 | 195 | 1.93e-15 | 75.1 |
MsaG017505 | AT4G29930.2 | 33.333 | 144 | 85 | 5 | 171 | 307 | 53 | 192 | 2.67e-15 | 74.3 |
MsaG017505 | AT4G29930.5 | 33.333 | 144 | 85 | 5 | 171 | 307 | 53 | 192 | 4.93e-15 | 73.9 |
MsaG017505 | AT4G29930.4 | 50.000 | 66 | 32 | 1 | 171 | 235 | 53 | 118 | 2.81e-14 | 70.9 |
MsaG017505 | AT4G09820.1 | 30.409 | 171 | 103 | 5 | 161 | 327 | 352 | 510 | 2.95e-14 | 73.9 |
MsaG017505 | AT4G17880.1 | 33.129 | 163 | 89 | 6 | 159 | 303 | 401 | 561 | 4.28e-14 | 73.6 |
MsaG017505 | AT4G29930.1 | 50.000 | 66 | 32 | 1 | 171 | 235 | 53 | 118 | 9.40e-14 | 70.5 |
MsaG017505 | AT4G29930.3 | 50.000 | 66 | 32 | 1 | 171 | 235 | 53 | 118 | 1.14e-13 | 70.5 |
MsaG017505 | AT4G29930.7 | 50.000 | 66 | 32 | 1 | 171 | 235 | 53 | 118 | 1.14e-13 | 70.5 |
MsaG017505 | AT2G22760.1 | 26.111 | 180 | 112 | 4 | 153 | 312 | 98 | 276 | 1.61e-13 | 70.5 |
MsaG017505 | AT2G22760.2 | 26.437 | 174 | 107 | 4 | 153 | 306 | 98 | 270 | 4.39e-13 | 68.9 |
MsaG017505 | AT5G46830.1 | 33.557 | 149 | 83 | 3 | 169 | 303 | 340 | 486 | 1.28e-12 | 68.9 |
MsaG017505 | AT2G46510.1 | 41.111 | 90 | 43 | 2 | 148 | 227 | 361 | 450 | 2.06e-12 | 68.6 |
MsaG017505 | AT1G32640.1 | 31.847 | 157 | 78 | 5 | 169 | 303 | 449 | 598 | 3.13e-12 | 67.8 |
MsaG017505 | AT4G00870.1 | 39.535 | 86 | 40 | 2 | 156 | 229 | 221 | 306 | 3.37e-11 | 64.3 |
MsaG017505 | AT2G28160.1 | 40.909 | 66 | 39 | 0 | 163 | 228 | 122 | 187 | 4.20e-11 | 63.5 |
MsaG017505 | AT2G28160.2 | 40.909 | 66 | 39 | 0 | 163 | 228 | 122 | 187 | 4.75e-11 | 63.5 |
MsaG017505 | AT5G46760.1 | 42.466 | 73 | 40 | 1 | 159 | 229 | 400 | 472 | 9.33e-11 | 63.5 |
Find 56 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATGAAGAGCTTCAGAATT+TGG | 0.194817 | 3:-110076084 | MsaT017505.1:CDS |
TTGAAAACTACTGGCATTTC+AGG | 0.202127 | 3:+110076023 | None:intergenic |
GTACCTACCTTGCTTATCTT+AGG | 0.245588 | 3:+110075870 | None:intergenic |
GCAACAGGAATTGGAGAAAA+AGG | 0.270835 | 3:-110074956 | MsaT017505.1:intron |
AGATTTCATTGAGGAATTAA+TGG | 0.282846 | 3:-110076438 | MsaT017505.1:CDS |
TCTTCAACACCACAGATTCT+TGG | 0.321672 | 3:-110076197 | MsaT017505.1:CDS |
AACACTTTCAATGAAATCTA+TGG | 0.323772 | 3:-110076236 | MsaT017505.1:CDS |
ATACCCTGCACTTCTGAATA+AGG | 0.328974 | 3:+110074903 | None:intergenic |
TCTCTTTCGTCTTCTCCTTT+CGG | 0.335778 | 3:+110075929 | None:intergenic |
CAAGAAGAGTTTGGAAGATA+TGG | 0.342140 | 3:+110076305 | None:intergenic |
AAGTCTTCTTGAGAAATAAA+TGG | 0.343736 | 3:+110076146 | None:intergenic |
GCTGCAAACAACATGTAAAA+TGG | 0.348415 | 3:-110076060 | MsaT017505.1:CDS |
TGTTGACTACAAGAAGAGTT+TGG | 0.397391 | 3:+110076296 | None:intergenic |
GGCATTTCAGGTGATTGTAT+TGG | 0.405729 | 3:+110076035 | None:intergenic |
GTCCTTGAAGTTTCTTCGAT+CGG | 0.408164 | 3:+110075973 | None:intergenic |
TTGATCTTCTTCTCCCATCA+TGG | 0.410222 | 3:+110076115 | None:intergenic |
TACCTACCTTGCTTATCTTA+GGG | 0.413903 | 3:+110075871 | None:intergenic |
CACAATGCAGGCTTCTTGCT+CGG | 0.422339 | 3:-110075347 | MsaT017505.1:CDS |
AGGGTTGAAATTTGTTGTGC+AGG | 0.424911 | 3:-110075460 | MsaT017505.1:CDS |
ATTTGTTGTGCAGGGAAGCC+AGG | 0.426657 | 3:-110075451 | MsaT017505.1:CDS |
CTTTGTAGTTTGAGGTAGAG+AGG | 0.429500 | 3:-110075495 | MsaT017505.1:intron |
TCATTGTTGCTATAGCTTTG+AGG | 0.433942 | 3:+110076269 | None:intergenic |
TTTCAATGATTTCACAATGC+AGG | 0.451446 | 3:-110075359 | MsaT017505.1:CDS |
TTTCAACACTGGTAAGGGTA+TGG | 0.466525 | 3:-110076006 | MsaT017505.1:CDS |
CAAGCCTTATTCAGAAGTGC+AGG | 0.468092 | 3:-110074907 | MsaT017505.1:CDS |
AACCGATCGAAGAAACTTCA+AGG | 0.484937 | 3:-110075975 | MsaT017505.1:CDS |
TGTTGAAGATTCATCAAGTA+AGG | 0.499336 | 3:+110076211 | None:intergenic |
TTACCAGTGTTGAAAACTAC+TGG | 0.522074 | 3:+110076014 | None:intergenic |
GACTTTCCACTGTCCATGAT+GGG | 0.524863 | 3:-110076128 | MsaT017505.1:CDS |
GGGTTGAAATTTGTTGTGCA+GGG | 0.525508 | 3:-110075459 | MsaT017505.1:CDS |
ACAGCCTTCGAAGAATCTAA+TGG | 0.532414 | 3:-110075952 | MsaT017505.1:CDS |
ACATAGATGGAGTTCTATGA+TGG | 0.535755 | 3:-110076461 | None:intergenic |
AGACTTTCCACTGTCCATGA+TGG | 0.536479 | 3:-110076129 | MsaT017505.1:CDS |
ATGGACAGAACAGCTATACT+TGG | 0.546390 | 3:-110075747 | MsaT017505.1:CDS |
TTATTCAGAAGTGCAGGGTA+TGG | 0.549665 | 3:-110074901 | MsaT017505.1:CDS |
TTTGAGGTAGAGAGGAGTGC+AGG | 0.549939 | 3:-110075487 | MsaT017505.1:CDS |
TAGAGAGGAGTGCAGGCACA+AGG | 0.551771 | 3:-110075480 | MsaT017505.1:CDS |
TAACACATTGTTGAATCTCA+AGG | 0.553569 | 3:+110075389 | None:intergenic |
TTTGTTGTGCAGGGAAGCCA+GGG | 0.555249 | 3:-110075450 | MsaT017505.1:CDS |
TTCAGAAGTGCAGGGTATGG+TGG | 0.556553 | 3:-110074898 | MsaT017505.1:CDS |
GTAAACACATTGGAAGCATT+AGG | 0.566951 | 3:-110075412 | MsaT017505.1:CDS |
TTTCTGATTAAGATTTCACT+TGG | 0.582741 | 3:+110075621 | None:intergenic |
TCGGCCATTAGATTCTTCGA+AGG | 0.598463 | 3:+110075948 | None:intergenic |
CGAAGAATCTAATGGCCGAA+AGG | 0.611328 | 3:-110075944 | MsaT017505.1:CDS |
TGCTTCCAATGTGTTTACTG+TGG | 0.617642 | 3:+110075417 | None:intergenic |
AGAGAGGAGTGCAGGCACAA+GGG | 0.627694 | 3:-110075479 | MsaT017505.1:CDS |
CTTAATCAGAAATTCTCCAA+AGG | 0.629828 | 3:-110075610 | MsaT017505.1:intron |
TAGTATGAACCAAGAATCTG+TGG | 0.634286 | 3:+110076188 | None:intergenic |
TCTTCTCCCATCATGGACAG+TGG | 0.637946 | 3:+110076122 | None:intergenic |
CTATGATGGAGATTTCATTG+AGG | 0.638365 | 3:-110076447 | MsaT017505.1:CDS |
AATTGTCCCTAAGATAAGCA+AGG | 0.652852 | 3:-110075877 | MsaT017505.1:intron |
AAGCCTTATTCAGAAGTGCA+GGG | 0.666202 | 3:-110074906 | MsaT017505.1:CDS |
GCTATCCACAGTAAACACAT+TGG | 0.673367 | 3:-110075422 | MsaT017505.1:CDS |
TTGCTCGTAGCATTGAAAGA+CGG | 0.697294 | 3:+110075898 | None:intergenic |
AATGCAGGCTTCTTGCTCGG+AGG | 0.698752 | 3:-110075344 | MsaT017505.1:intron |
ACTGTGGATAGCAACAACCC+TGG | 0.706149 | 3:+110075433 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 110074885 | 110076477 | 110074885 | ID=MsaG017505 |
Chr3 | mRNA | 110074885 | 110076477 | 110074885 | ID=MsaT017505.1;Parent=MsaG017505 |
Chr3 | exon | 110074885 | 110074971 | 110074885 | ID=MsaT017505.1.exon4;Parent=MsaT017505.1 |
Chr3 | CDS | 110074885 | 110074971 | 110074885 | ID=cds.MsaT017505.1;Parent=MsaT017505.1 |
Chr3 | exon | 110075345 | 110075509 | 110075345 | ID=MsaT017505.1.exon3;Parent=MsaT017505.1 |
Chr3 | CDS | 110075345 | 110075509 | 110075345 | ID=cds.MsaT017505.1;Parent=MsaT017505.1 |
Chr3 | exon | 110075611 | 110075769 | 110075611 | ID=MsaT017505.1.exon2;Parent=MsaT017505.1 |
Chr3 | CDS | 110075611 | 110075769 | 110075611 | ID=cds.MsaT017505.1;Parent=MsaT017505.1 |
Chr3 | exon | 110075878 | 110076477 | 110075878 | ID=MsaT017505.1.exon1;Parent=MsaT017505.1 |
Chr3 | CDS | 110075878 | 110076477 | 110075878 | ID=cds.MsaT017505.1;Parent=MsaT017505.1 |
Gene Sequence |
Protein sequence |