AlfalfaGEDB | MsaG017526

M. sativa ssp. caerulea / MsaG017526

KEGG: K14503
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048532 GO:0048545 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1904961 GO:2000112 GO:2000113 GO:2001141
PFAM: PF05687.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017526	XP_013462104.1	91.111	315	6	1	1	293	1	315	0.0	574

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017526	sp\|Q8S307\|BZR1_ARATH	62.373	295	88	10	15	291	45	334	2.39e-103	308

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017526	tr\|B7FHU2\|B7FHU2_MEDTR	91.111	315	6	1	1	293	1	315	0.0	574

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TFs/TRs:

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Gene ID	Type	Classification
MsaG017526	TF	BES1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000011	MsaG017526	0.807596	7.953698e-50	1.281803e-47
MsaG000062	MsaG017526	0.825152	9.719393e-54	2.455109e-51
MsaG000070	MsaG017526	0.804471	3.587803e-49	5.372916e-47
MsaG000083	MsaG017526	0.807278	9.280611e-50	1.484376e-47
MsaG000113	MsaG017526	0.819857	1.631241e-52	3.573986e-50
MsaG000206	MsaG017526	0.816272	1.045045e-51	2.086452e-49
MsaG000236	MsaG017526	0.800530	2.308551e-48	3.158906e-46
MsaG000237	MsaG017526	0.849834	4.768167e-60	2.569596e-57
MsaG000292	MsaG017526	0.802729	8.214083e-49	1.181517e-46
MsaG000366	MsaG017526	0.850185	3.806237e-60	2.075890e-57

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017526	MtrunA17_Chr3g0141401	91.111	315	6	1	1	293	1	315	0.0	574
MsaG017526	MtrunA17_Chr5g0403631	53.401	294	113	8	18	291	34	323	1.27e-74	231
MsaG017526	MtrunA17_Chr1g0154651	45.652	276	85	6	16	291	37	247	4.75e-65	204
MsaG017526	MtrunA17_Chr2g0315211	39.610	308	134	15	18	290	31	321	5.48e-33	123
MsaG017526	MtrunA17_Chr2g0315201	37.013	308	135	9	18	290	31	314	3.17e-30	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017526	AT1G75080.2	62.373	295	88	10	15	291	45	334	2.43e-104	308
MsaG017526	AT1G75080.1	62.373	295	88	10	15	291	45	334	2.43e-104	308
MsaG017526	AT1G19350.3	61.616	297	91	9	15	293	66	357	1.79e-103	306
MsaG017526	AT1G19350.5	61.616	297	91	9	15	293	44	335	2.01e-103	305
MsaG017526	AT1G19350.1	61.616	297	91	9	15	293	44	335	2.01e-103	305
MsaG017526	AT1G19350.6	61.616	297	91	9	15	293	44	335	2.01e-103	305
MsaG017526	AT1G19350.4	61.616	297	91	9	15	293	44	335	2.01e-103	305
MsaG017526	AT3G50750.1	52.536	276	88	7	15	288	36	270	2.28e-67	211
MsaG017526	AT4G36780.1	57.627	177	68	3	15	187	38	211	1.48e-42	147
MsaG017526	AT1G78700.1	36.111	324	121	13	18	288	31	321	9.51e-36	131

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Find 101 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTGTGATAACAATG+AGG	0.672851	3:+110390160	MsaT017526.1:CDS
AAAGCTCTTTGTGCTGAAGC+TGG	0.466712	3:+110390188	MsaT017526.1:CDS
AAAGGTGGGAGAGACATGTT+GGG	0.494510	3:-110391265	None:intergenic
AAATTTCCTGCACCGTCGCC+TGG	0.461316	3:-110391070	None:intergenic
AAGAGGAAGATGGGCTAACT+TGG	0.459342	3:-110391168	None:intergenic
AAGATGGCACCACTTATCGC+AGG	0.566281	3:+110390225	MsaT017526.1:CDS
AAGGATTCATGAAGTGGGCT+TGG	0.442178	3:+110391690	MsaT017526.1:CDS
AAGGTGGGAGAGACATGTTG+GGG	0.734444	3:-110391264	None:intergenic
AATCAATTGCCAAAGCATCA+GGG	0.645925	3:+110391371	MsaT017526.1:CDS
AATGATGATGAAAGAGGACT+TGG	0.489656	3:-110391124	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	110390006	110391756	110390006	ID=MsaG017526
Chr3	mRNA	110390006	110391756	110390006	ID=MsaT017526.1;Parent=MsaG017526
Chr3	exon	110390006	110390045	110390006	ID=MsaT017526.1.exon1;Parent=MsaT017526.1
Chr3	CDS	110390006	110390045	110390006	ID=cds.MsaT017526.1;Parent=MsaT017526.1
Chr3	exon	110390111	110390247	110390111	ID=MsaT017526.1.exon2;Parent=MsaT017526.1
Chr3	CDS	110390111	110390247	110390111	ID=cds.MsaT017526.1;Parent=MsaT017526.1
Chr3	exon	110391052	110391756	110391052	ID=MsaT017526.1.exon3;Parent=MsaT017526.1
Chr3	CDS	110391052	110391756	110391052	ID=cds.MsaT017526.1;Parent=MsaT017526.1

Gene Sequence

>MsaT017526.1

ATGGCTTCTGACGGAGCAACTTCAGCGGCGAATTCAAGTCCGGCAAAGATTTACGCGGGATTAAGGTCTCAGGGGAATTATAATTTACCAAAACACTGTGATAACAATGAGGTCTTGAAAGCTCTTTGTGCTGAAGCTGGTTGGATTGTTGAAGAAGATGGCACCACTTATCGCAGGGGATCAAGGGCAGAAACACCAGGCGACGGTGCAGGAAATTTTAACAGAAACAACCCATTTTCATCTCAAAATCCAAGTCCTCTTTCATCATCATTTCCAAGTCCAATCCCTTCCTACCAAGTTAGCCCATCTTCCTCTTCATTTCCGAGCCCGTCTCGTATGGATGCAAACAACAATGCATCAAATTACATTCCATATGCTCGCAGCATGTTCCCCAACATGTCTCTCCCACCTTTGAGAATATCAAACAGCGCGCCTGTGACGCCACCTATCTCATCACCAACTTCAAGAAATCCCAAACCCATGATTCCAACATGGGAATCAATTGCCAAAGCATCAGGGACATCCTTCAGTCACCCTTTCTTCGCAGCTTCTGCGCCTACTAGTCCATCCCACCGGAACCTTTATACACCACCTACTATTCCTGAATGTGATGAGTCTGATACTTCTACTGTTGAGTCTGGCCAATGGTTGAATTTCCAAGCCTTTGCAGCTTCTGCTAAATCAGTCTCTCCTACATTGAACTTTATGAAACCTGTAATTAATGAGCAGCATAACATGCTGCCTCATAACAGAATGCAGGAGATGAGGATTTCAGAGCCAGAGTTTGGGGTGCAGGTCAAGCCTTGGGTTGGGGAAAGGATTCATGAAGTGGGCTTGGATGATTTGGAGCTTACTCTTGGAAATGGAAAGGCACCTAGTTAA

Protein sequence

>MsaT017526.1

MASDGATSAANSSPAKIYAGLRSQGNYNLPKHCDNNEVLKALCAEAGWIVEEDGTTYRRGSRAETPGDGAGNFNRNNPFSSQNPSPLSSSFPSPIPSYQVSPSSSSFPSPSRMDANNNASNYIPYARSMFPNMSLPPLRISNSAPVTPPISSPTSRNPKPMIPTWESIAKASGTSFSHPFFAASAPTSPSHRNLYTPPTIPECDESDTSTVESGQWLNFQAFAASAKSVSPTLNFMKPVINEQHNMLPHNRMQEMRISEPEFGVQVKPWVGERIHEVGLDDLELTLGNGKAPS*