AlfalfaGEDB | MsaG017545

M. sativa ssp. caerulea / MsaG017545

KEGG: -
GO: GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017545	XP_013462127.2	98.913	92	1	0	1	92	1	92	1.39e-60	189

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017545	sp\|F4JVB8\|RADL1_ARATH	47.778	90	44	2	3	92	14	100	7.73e-25	92.4

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017545	tr\|A0A396IZP4\|A0A396IZP4_MEDTR	98.913	92	1	0	1	92	1	92	6.62e-61	189

TFs/TRs:

Gene ID	Type	Classification
MsaG017545	TF	MYB-related

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000216	MsaG017545	0.802198	1.055197e-48	1.499478e-46
MsaG000350	MsaG017545	0.809262	3.522560e-50	5.908962e-48
MsaG000510	MsaG017545	0.803440	5.862685e-49	8.572535e-47
MsaG000719	MsaG017545	0.800787	2.047459e-48	2.817984e-46
MsaG005130	MsaG017545	0.833157	1.135406e-55	3.601115e-53
MsaG005288	MsaG017545	0.802436	9.431937e-49	1.347667e-46
MsaG007497	MsaG017545	0.827390	2.867735e-54	7.709181e-52
MsaG007607	MsaG017545	0.812717	6.336590e-51	1.156756e-48
MsaG009256	MsaG017545	0.802552	8.931143e-49	1.279523e-46
MsaG011133	MsaG017545	0.814956	2.046089e-51	3.950912e-49
MsaG012393	MsaG017545	0.857933	2.272134e-62	1.634319e-59
MsaG013265	MsaG017545	0.815979	1.214365e-51	2.406458e-49
MsaG014548	MsaG017545	0.834199	6.253869e-56	2.045221e-53
MsaG014720	MsaG017545	0.849131	7.469897e-60	3.930402e-57
MsaG015347	MsaG017545	0.855392	1.258937e-61	8.249422e-59
MsaG017362	MsaG017545	0.828855	1.276805e-54	3.576324e-52
MsaG017484	MsaG017545	0.841630	7.847818e-58	3.225266e-55
MsaG017545	MsaG017879	0.878310	6.531013e-69	1.090282e-65
MsaG017545	MsaG019532	0.810750	1.689997e-50	2.939247e-48
MsaG017545	MsaG019623	0.821996	5.279942e-53	1.224331e-50
MsaG017545	MsaG020297	0.855183	1.447112e-61	9.410688e-59
MsaG017545	MsaG020513	0.811556	1.132025e-50	2.008124e-48
MsaG017545	MsaG022018	0.800913	1.930463e-48	2.664364e-46
MsaG017545	MsaG022793	0.823436	2.448897e-53	5.903533e-51
MsaG017545	MsaG022907	0.818896	2.695352e-52	5.758061e-50
MsaG017545	MsaG023069	0.806240	1.534649e-49	2.395209e-47
MsaG017545	MsaG023671	0.828089	1.951144e-54	5.348980e-52
MsaG017545	MsaG023978	0.824292	1.546876e-53	3.816726e-51
MsaG017545	MsaG024380	0.801414	1.526494e-48	2.130888e-46
MsaG017545	MsaG027474	0.884358	4.409149e-71	9.788213e-68
MsaG017545	MsaG027566	0.803775	5.000370e-49	7.368507e-47
MsaG017545	MsaG030454	0.857152	3.858290e-62	2.695666e-59
MsaG017545	MsaG030518	0.800603	2.231319e-48	3.058312e-46
MsaG017545	MsaG031752	0.809396	3.296693e-50	5.548341e-48
MsaG017545	MsaG032230	0.809872	2.608700e-50	4.441091e-48
MsaG017545	MsaG032378	0.846298	4.462673e-59	2.134649e-56
MsaG017545	MsaG032814	0.806257	1.521528e-49	2.375753e-47
MsaG017545	MsaG033171	0.859812	6.266706e-63	4.837390e-60
MsaG017545	MsaG033856	0.819132	2.382855e-52	5.122390e-50
MsaG017545	MsaG033860	0.809088	3.836418e-50	6.408949e-48
MsaG017545	MsaG036699	0.808558	4.974803e-50	8.205141e-48
MsaG017545	MsaG038460	0.867852	2.034077e-65	2.156681e-62
MsaG017545	MsaG039743	0.814136	3.100520e-51	5.864640e-49
MsaG017545	MsaG040153	0.801148	1.728652e-48	2.398589e-46
MsaG017545	MsaG041798	0.859493	7.805612e-63	5.953025e-60
MsaG017545	MsaG003580	0.803071	6.985377e-49	1.012747e-46
MsaG017545	MsaG004309	0.866511	5.426448e-65	5.447050e-62
MsaG017545	MsaG009684	0.821473	6.965495e-53	1.592849e-50
MsaG017545	MsaG007989	0.866612	5.041279e-65	5.082420e-62
MsaG017545	MsaG031318	0.806200	1.563863e-49	2.438550e-47
MsaG017545	MsaG031852	0.848616	1.036747e-59	5.359986e-57
MsaG017545	MsaG032515	0.818043	4.197450e-52	8.770700e-50
MsaG017545	MsaG034453	0.850302	3.531667e-60	1.933788e-57
MsaG017545	MsaG036456	0.845500	7.332568e-59	3.415618e-56
MsaG017545	MsaG037375	0.809230	3.578221e-50	5.997691e-48
MsaG017545	MsaG046971	0.862815	7.688817e-64	6.662390e-61

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017545	MtrunA17_Chr3g0141641	98.913	92	1	0	1	92	1	92	1.28e-64	189
MsaG017545	MtrunA17_Chr1g0155181	50.000	84	39	1	2	85	6	86	6.48e-27	94.4
MsaG017545	MtrunA17_Chr3g0141601	43.333	90	46	1	3	92	7	91	8.68e-23	84.0
MsaG017545	MtrunA17_Chr7g0255841	44.828	87	39	1	6	92	15	92	5.48e-22	82.0
MsaG017545	MtrunA17_Chr3g0144631	53.846	65	30	0	3	67	16	80	6.89e-22	81.3
MsaG017545	MtrunA17_Chr8g0373131	52.632	76	31	2	1	76	3	73	2.81e-21	79.7
MsaG017545	MtrunA17_Chr8g0373111	54.412	68	30	1	2	69	4	70	5.00e-21	79.0
MsaG017545	MtrunA17_Chr8g0373121	54.412	68	30	1	2	69	4	70	5.00e-21	79.0
MsaG017545	MtrunA17_Chr8g0373101	59.016	61	24	1	3	63	5	64	1.04e-20	78.2
MsaG017545	MtrunA17_Chr5g0404101	43.750	80	41	1	1	76	17	96	1.05e-20	79.0
MsaG017545	MtrunA17_Chr6g0449111	46.875	64	34	0	2	65	9	72	5.05e-18	71.6
MsaG017545	MtrunA17_Chr5g0404301	53.226	62	28	1	2	63	3	63	5.57e-18	70.9
MsaG017545	MtrunA17_Chr3g0081631	39.130	92	46	2	2	92	9	91	3.54e-17	69.7
MsaG017545	MtrunA17_Chr1g0162081	40.299	67	40	0	3	69	12	78	2.23e-14	66.2
MsaG017545	MtrunA17_Chr5g0436501	40.299	67	40	0	3	69	27	93	8.18e-14	64.3
MsaG017545	MtrunA17_Chr8g0365011	42.857	63	36	0	3	65	8	70	2.93e-13	63.2
MsaG017545	MtrunA17_Chr8g0364741	39.683	63	38	0	3	65	10	72	6.33e-13	59.7
MsaG017545	MtrunA17_Chr5g0429521	44.444	63	35	0	3	65	29	91	1.98e-12	60.8
MsaG017545	MtrunA17_Chr7g0241761	46.032	63	34	0	3	65	35	97	2.65e-12	60.5
MsaG017545	MtrunA17_Chr3g0104071	44.444	63	35	0	3	65	43	105	4.94e-12	60.1
MsaG017545	MtrunA17_Chr1g0210471	38.028	71	42	2	3	72	24	93	1.70e-11	57.8
MsaG017545	MtrunA17_Chr1g0194071	53.571	56	25	1	2	56	10	65	3.49e-11	54.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017545	AT4G39250.1	47.778	90	44	2	3	92	14	100	7.86e-26	92.4
MsaG017545	AT1G75250.2	48.889	90	41	2	3	91	12	97	3.57e-25	90.5
MsaG017545	AT1G75250.1	57.812	64	27	0	3	66	12	75	5.97e-23	85.9
MsaG017545	AT1G19510.1	59.016	61	25	0	6	66	15	75	1.26e-21	81.6
MsaG017545	AT2G21650.1	43.333	90	49	2	3	92	14	101	4.07e-21	80.5
MsaG017545	AT5G05790.2	48.485	66	34	0	2	67	30	95	1.11e-16	72.8
MsaG017545	AT5G05790.1	48.485	66	34	0	2	67	30	95	1.11e-16	72.8
MsaG017545	AT2G18328.1	51.667	60	29	0	7	66	15	74	5.88e-16	66.6
MsaG017545	AT3G11280.2	41.176	68	40	0	3	70	33	100	3.87e-15	68.6
MsaG017545	AT3G11280.1	41.176	68	40	0	3	70	33	100	3.87e-15	68.6
MsaG017545	AT5G08520.1	40.244	82	49	0	3	84	12	93	6.32e-15	68.2
MsaG017545	AT2G38090.1	46.032	63	34	0	3	65	29	91	1.03e-13	64.7
MsaG017545	AT4G36570.1	61.364	44	17	0	3	46	12	55	1.21e-13	60.1
MsaG017545	AT5G58900.1	46.032	63	34	0	3	65	34	96	1.32e-12	61.6
MsaG017545	AT1G49010.1	38.667	75	43	1	3	74	8	82	1.86e-12	61.6
MsaG017545	AT5G01200.1	39.506	81	48	1	3	82	30	110	8.08e-12	59.3
MsaG017545	AT5G04760.1	39.683	63	37	1	3	65	6	67	8.74e-11	56.2

Find 24 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCAACAATGGAAGGCAATT+TGG	0.250643	3:-110535963	MsaT017545.1:CDS
TGCCACCGATTTGGATCTTC+TGG	0.260812	3:+110536122	None:intergenic
AAATCCCACTGCCAACTTAC+AGG	0.308746	3:-110536004	MsaT017545.1:CDS
GCCACATGTTGCCACCGATT+TGG	0.310871	3:+110536113	None:intergenic
TTCGAATGAGATCTTCCTTT+AGG	0.339675	3:+110536039	None:intergenic
GAGGATGCACTTGCAGTATA+TGG	0.363746	3:-110536146	MsaT017545.1:CDS
GACAAATTAGCAGCATGGGT+TGG	0.508959	3:-110536193	None:intergenic
AATCCCACTGCCAACTTACA+GGG	0.517510	3:-110536003	MsaT017545.1:CDS
CCAACTTACAGGGGAGGTGC+TGG	0.534339	3:-110535993	MsaT017545.1:CDS
CTCCCCTGTAAGTTGGCAGT+GGG	0.537457	3:+110536000	None:intergenic
CCAGCACCTCCCCTGTAAGT+TGG	0.540006	3:+110535993	None:intergenic
CAACATGTGGCTAATGCTGT+TGG	0.541304	3:-110536101	MsaT017545.1:CDS
GGCAATTTGGCAATGAGCAA+AGG	0.543201	3:-110535950	MsaT017545.1:intron
CCTCCCCTGTAAGTTGGCAG+TGG	0.556127	3:+110535999	None:intergenic
ATGGTCCAGAAGATCCAAAT+CGG	0.560223	3:-110536127	MsaT017545.1:CDS
CATGTGGCTAATGCTGTTGG+TGG	0.579036	3:-110536098	MsaT017545.1:CDS
TCCAAATCGGTGGCAACATG+TGG	0.582584	3:-110536114	MsaT017545.1:CDS
AATGCATTACGAGATCCTAA+AGG	0.590523	3:-110536054	MsaT017545.1:CDS
GCTGGTATCAATATCAACAA+TGG	0.592424	3:-110535975	MsaT017545.1:CDS
GTATCAATATCAACAATGGA+AGG	0.611037	3:-110535971	MsaT017545.1:CDS
TGGTGGAAAATCCATACAAG+AGG	0.660309	3:-110536081	MsaT017545.1:CDS
ATCCCACTGCCAACTTACAG+GGG	0.669431	3:-110536002	MsaT017545.1:CDS
CCACTGCCAACTTACAGGGG+AGG	0.671704	3:-110535999	MsaT017545.1:CDS
GTCCAGAAGATCCAAATCGG+TGG	0.678303	3:-110536124	MsaT017545.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	110534819	110536201	110534819	ID=MsaG017545
Chr3	mRNA	110534819	110536201	110534819	ID=MsaT017545.1;Parent=MsaG017545
Chr3	exon	110534819	110534846	110534819	ID=MsaT017545.1.exon2;Parent=MsaT017545.1
Chr3	CDS	110534819	110534846	110534819	ID=cds.MsaT017545.1;Parent=MsaT017545.1
Chr3	exon	110535951	110536201	110535951	ID=MsaT017545.1.exon1;Parent=MsaT017545.1
Chr3	CDS	110535951	110536201	110535951	ID=cds.MsaT017545.1;Parent=MsaT017545.1

Gene Sequence	>MsaT017545.1 ATGGGTTGGACAAGAGAAGAGAACAGACGTTTTGAGGATGCACTTGCAGTATATGGTCCAGAAGATCCAAATCGGTGGCAACATGTGGCTAATGCTGTTGGTGGAAAATCCATACAAGAGGTGAAAATGCATTACGAGATCCTAAAGGAAGATCTCATTCGAATTGAGCATGATCAAATCCCACTGCCAACTTACAGGGGAGGTGCTGGTATCAATATCAACAATGGAAGGCAATTTGGCAATGAGCAAAGGCGAATGAGGAATCTTAATATCCATTGA
Protein sequence	>MsaT017545.1 MGWTREENRRFEDALAVYGPEDPNRWQHVANAVGGKSIQEVKMHYEILKEDLIRIEHDQIPLPTYRGGAGININNGRQFGNEQRRMRNLNIH*