AlfalfaGEDB | MsaG017545

M. sativa ssp. caerulea / MsaG017545

KEGG: -
GO: GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017545	XP_013462127.2	98.913	92	1	0	1	92	1	92	1.39e-60	189

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017545	sp\|F4JVB8\|RADL1_ARATH	47.778	90	44	2	3	92	14	100	7.73e-25	92.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017545	tr\|A0A396IZP4\|A0A396IZP4_MEDTR	98.913	92	1	0	1	92	1	92	6.62e-61	189

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TFs/TRs:

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Gene ID	Type	Classification
MsaG017545	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000216	MsaG017545	0.802198	1.055197e-48	1.499478e-46
MsaG000350	MsaG017545	0.809262	3.522560e-50	5.908962e-48
MsaG000510	MsaG017545	0.803440	5.862685e-49	8.572535e-47
MsaG000719	MsaG017545	0.800787	2.047459e-48	2.817984e-46
MsaG005130	MsaG017545	0.833157	1.135406e-55	3.601115e-53
MsaG005288	MsaG017545	0.802436	9.431937e-49	1.347667e-46
MsaG007497	MsaG017545	0.827390	2.867735e-54	7.709181e-52
MsaG007607	MsaG017545	0.812717	6.336590e-51	1.156756e-48
MsaG009256	MsaG017545	0.802552	8.931143e-49	1.279523e-46
MsaG011133	MsaG017545	0.814956	2.046089e-51	3.950912e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017545	MtrunA17_Chr3g0141641	98.913	92	1	0	1	92	1	92	1.28e-64	189
MsaG017545	MtrunA17_Chr1g0155181	50.000	84	39	1	2	85	6	86	6.48e-27	94.4
MsaG017545	MtrunA17_Chr3g0141601	43.333	90	46	1	3	92	7	91	8.68e-23	84.0
MsaG017545	MtrunA17_Chr7g0255841	44.828	87	39	1	6	92	15	92	5.48e-22	82.0
MsaG017545	MtrunA17_Chr3g0144631	53.846	65	30	0	3	67	16	80	6.89e-22	81.3
MsaG017545	MtrunA17_Chr8g0373131	52.632	76	31	2	1	76	3	73	2.81e-21	79.7
MsaG017545	MtrunA17_Chr8g0373111	54.412	68	30	1	2	69	4	70	5.00e-21	79.0
MsaG017545	MtrunA17_Chr8g0373121	54.412	68	30	1	2	69	4	70	5.00e-21	79.0
MsaG017545	MtrunA17_Chr8g0373101	59.016	61	24	1	3	63	5	64	1.04e-20	78.2
MsaG017545	MtrunA17_Chr5g0404101	43.750	80	41	1	1	76	17	96	1.05e-20	79.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017545	AT4G39250.1	47.778	90	44	2	3	92	14	100	7.86e-26	92.4
MsaG017545	AT1G75250.2	48.889	90	41	2	3	91	12	97	3.57e-25	90.5
MsaG017545	AT1G75250.1	57.812	64	27	0	3	66	12	75	5.97e-23	85.9
MsaG017545	AT1G19510.1	59.016	61	25	0	6	66	15	75	1.26e-21	81.6
MsaG017545	AT2G21650.1	43.333	90	49	2	3	92	14	101	4.07e-21	80.5
MsaG017545	AT5G05790.2	48.485	66	34	0	2	67	30	95	1.11e-16	72.8
MsaG017545	AT5G05790.1	48.485	66	34	0	2	67	30	95	1.11e-16	72.8
MsaG017545	AT2G18328.1	51.667	60	29	0	7	66	15	74	5.88e-16	66.6
MsaG017545	AT3G11280.2	41.176	68	40	0	3	70	33	100	3.87e-15	68.6
MsaG017545	AT3G11280.1	41.176	68	40	0	3	70	33	100	3.87e-15	68.6

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Find 24 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCCACTGCCAACTTAC+AGG	0.308746	3:-110536004	MsaT017545.1:CDS
AATCCCACTGCCAACTTACA+GGG	0.517510	3:-110536003	MsaT017545.1:CDS
AATGCATTACGAGATCCTAA+AGG	0.590523	3:-110536054	MsaT017545.1:CDS
ATCAACAATGGAAGGCAATT+TGG	0.250643	3:-110535963	MsaT017545.1:CDS
ATCCCACTGCCAACTTACAG+GGG	0.669431	3:-110536002	MsaT017545.1:CDS
ATGGTCCAGAAGATCCAAAT+CGG	0.560223	3:-110536127	MsaT017545.1:CDS
CAACATGTGGCTAATGCTGT+TGG	0.541304	3:-110536101	MsaT017545.1:CDS
CATGTGGCTAATGCTGTTGG+TGG	0.579036	3:-110536098	MsaT017545.1:CDS
CCAACTTACAGGGGAGGTGC+TGG	0.534339	3:-110535993	MsaT017545.1:CDS
CCACTGCCAACTTACAGGGG+AGG	0.671704	3:-110535999	MsaT017545.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	110534819	110536201	110534819	ID=MsaG017545
Chr3	mRNA	110534819	110536201	110534819	ID=MsaT017545.1;Parent=MsaG017545
Chr3	exon	110534819	110534846	110534819	ID=MsaT017545.1.exon2;Parent=MsaT017545.1
Chr3	CDS	110534819	110534846	110534819	ID=cds.MsaT017545.1;Parent=MsaT017545.1
Chr3	exon	110535951	110536201	110535951	ID=MsaT017545.1.exon1;Parent=MsaT017545.1
Chr3	CDS	110535951	110536201	110535951	ID=cds.MsaT017545.1;Parent=MsaT017545.1

Gene Sequence	>MsaT017545.1 ATGGGTTGGACAAGAGAAGAGAACAGACGTTTTGAGGATGCACTTGCAGTATATGGTCCAGAAGATCCAAATCGGTGGCAACATGTGGCTAATGCTGTTGGTGGAAAATCCATACAAGAGGTGAAAATGCATTACGAGATCCTAAAGGAAGATCTCATTCGAATTGAGCATGATCAAATCCCACTGCCAACTTACAGGGGAGGTGCTGGTATCAATATCAACAATGGAAGGCAATTTGGCAATGAGCAAAGGCGAATGAGGAATCTTAATATCCATTGA
Protein sequence	>MsaT017545.1 MGWTREENRRFEDALAVYGPEDPNRWQHVANAVGGKSIQEVKMHYEILKEDLIRIEHDQIPLPTYRGGAGININNGRQFGNEQRRMRNLNIH*