AlfalfaGEDB | MsaG017572

M. sativa ssp. caerulea / MsaG017572

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF07526.14

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017572	XP_013462165.2	91.765	595	37	4	1	591	1	587	0.0	1118

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017572	sp\|Q9FWS9\|BLH3_ARATH	48.166	409	178	8	32	430	47	431	1.05e-107	336

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017572	tr\|A0A072VDF1\|A0A072VDF1_MEDTR	91.597	595	38	4	1	591	1	587	0.0	1117

TFs/TRs:

Gene ID	Type	Classification
MsaG017572	TF	HB-BELL

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000202	MsaG017572	0.840512	1.538991e-57	6.105125e-55
MsaG000416	MsaG017572	0.815373	1.654773e-51	3.229185e-49
MsaG000488	MsaG017572	0.809715	2.818087e-50	4.779487e-48
MsaG000430	MsaG017572	0.806965	1.080606e-49	1.715580e-47
MsaG000461	MsaG017572	0.810337	2.073399e-50	3.570065e-48
MsaG000607	MsaG017572	0.807401	8.742530e-50	1.402423e-47
MsaG001767	MsaG017572	0.821302	7.626765e-53	1.736199e-50
MsaG003309	MsaG017572	0.821086	8.545854e-53	1.934364e-50
MsaG003806	MsaG017572	0.806107	1.636326e-49	2.545804e-47
MsaG004165	MsaG017572	0.830091	6.417684e-55	1.862183e-52
MsaG004191	MsaG017572	0.827479	2.729986e-54	7.357008e-52
MsaG004348	MsaG017572	0.804452	3.620769e-49	5.419927e-47
MsaG004402	MsaG017572	0.802854	7.741649e-49	1.116750e-46
MsaG004404	MsaG017572	0.805022	2.756801e-49	4.181699e-47
MsaG004710	MsaG017572	0.809248	3.545307e-50	5.945329e-48
MsaG004967	MsaG017572	0.803808	4.921844e-49	7.258399e-47
MsaG005424	MsaG017572	0.807919	6.796257e-50	1.103880e-47
MsaG005665	MsaG017572	0.810919	1.553779e-50	2.713539e-48
MsaG006277	MsaG017572	0.811062	1.447842e-50	2.537419e-48
MsaG006281	MsaG017572	0.810745	1.693958e-50	2.945797e-48
MsaG006395	MsaG017572	0.841484	8.571139e-58	3.506228e-55
MsaG006803	MsaG017572	0.804813	3.045945e-49	4.597920e-47
MsaG007516	MsaG017572	0.826538	4.572712e-54	1.200335e-51
MsaG007623	MsaG017572	0.809628	2.942100e-50	4.979299e-48
MsaG007970	MsaG017572	0.815529	1.528584e-51	2.994636e-49
MsaG009348	MsaG017572	0.847340	2.321838e-59	1.150008e-56
MsaG009478	MsaG017572	0.836239	1.921755e-56	6.681099e-54
MsaG009640	MsaG017572	0.810142	2.283176e-50	3.912478e-48
MsaG009900	MsaG017572	0.803927	4.651220e-49	6.878209e-47
MsaG012161	MsaG017572	0.810459	1.951583e-50	3.370366e-48
MsaG014547	MsaG017572	0.812262	7.958500e-51	1.436465e-48
MsaG014718	MsaG017572	0.809862	2.620661e-50	4.460502e-48
MsaG016687	MsaG017572	0.834479	5.324516e-56	1.756002e-53
MsaG016976	MsaG017572	0.835884	2.362502e-56	8.125907e-54
MsaG017134	MsaG017572	0.823938	1.871416e-53	4.573117e-51
MsaG017243	MsaG017572	0.806905	1.112333e-49	1.763460e-47
MsaG017540	MsaG017572	0.838547	4.958241e-57	1.849688e-54
MsaG017572	MsaG018437	0.831417	3.047578e-55	9.186569e-53
MsaG017572	MsaG018552	0.808270	5.724852e-50	9.377266e-48
MsaG017572	MsaG018649	0.814783	2.233738e-51	4.294517e-49
MsaG017572	MsaG019437	0.802191	1.058922e-48	1.504519e-46
MsaG017572	MsaG019641	0.838266	5.853126e-57	2.164407e-54
MsaG017572	MsaG020042	0.822537	3.959577e-53	9.315968e-51
MsaG017572	MsaG020157	0.807158	9.840922e-50	1.569498e-47
MsaG017572	MsaG020255	0.805137	2.608485e-49	3.967307e-47
MsaG017572	MsaG020499	0.838622	4.744191e-57	1.773963e-54
MsaG017572	MsaG020576	0.843534	2.465511e-58	1.076993e-55
MsaG017572	MsaG021109	0.810691	1.740334e-50	3.022421e-48
MsaG017572	MsaG021339	0.812033	8.927097e-51	1.602230e-48
MsaG017572	MsaG021344	0.815345	1.678275e-51	3.272769e-49
MsaG017572	MsaG023554	0.827058	3.441134e-54	9.164518e-52
MsaG017572	MsaG023522	0.813532	4.206509e-51	7.837136e-49
MsaG017572	MsaG023979	0.813695	3.875222e-51	7.249395e-49
MsaG017572	MsaG026553	0.801777	1.286831e-48	1.811196e-46
MsaG017572	MsaG026696	0.862290	1.113657e-63	9.452445e-61
MsaG017572	MsaG027021	0.843602	2.363952e-58	1.034853e-55
MsaG017572	MsaG027911	0.802715	8.268806e-49	1.189007e-46
MsaG017572	MsaG028158	0.802172	1.068381e-48	1.517316e-46
MsaG017572	MsaG030353	0.800896	1.945789e-48	2.684525e-46
MsaG017572	MsaG031125	0.806325	1.472526e-49	2.302907e-47
MsaG017572	MsaG031706	0.808943	4.119529e-50	6.857953e-48
MsaG017572	MsaG032712	0.800225	2.662057e-48	3.617501e-46
MsaG017572	MsaG033499	0.800781	2.053476e-48	2.825877e-46
MsaG017572	MsaG034510	0.801490	1.472692e-48	2.059313e-46
MsaG017572	MsaG035089	0.816352	1.003200e-51	2.006987e-49
MsaG017572	MsaG035114	0.805791	1.905014e-49	2.941823e-47
MsaG017572	MsaG035157	0.830969	3.921823e-55	1.166919e-52
MsaG017572	MsaG036159	0.803820	4.894985e-49	7.220704e-47
MsaG017572	MsaG036331	0.815960	1.226394e-51	2.429118e-49
MsaG017572	MsaG036594	0.806496	1.356150e-49	2.129452e-47
MsaG017572	MsaG037924	0.831720	2.568402e-55	7.811832e-53
MsaG017572	MsaG037969	0.815010	1.990400e-51	3.848689e-49
MsaG017572	MsaG038993	0.839456	2.891074e-57	1.109526e-54
MsaG017572	MsaG040351	0.819111	2.409262e-52	5.176287e-50
MsaG017572	MsaG040859	0.800730	2.103080e-48	2.890794e-46
MsaG017572	MsaG041505	0.807078	1.022719e-49	1.628049e-47
MsaG017572	MsaG041704	0.817739	4.912035e-52	1.018361e-49
MsaG017572	MsaG041898	0.803260	6.386002e-49	9.298975e-47
MsaG017572	MsaG041935	0.808648	4.759725e-50	7.867640e-48
MsaG017572	MsaG042634	0.821856	5.686437e-53	1.313660e-50
MsaG017572	MsaG043395	0.816048	1.172062e-51	2.326673e-49
MsaG017572	MsaG044093	0.831239	3.368682e-55	1.010157e-52
MsaG017572	MsaG044228	0.826304	5.195041e-54	1.354883e-51
MsaG017572	MsaG044267	0.809652	2.907015e-50	4.922874e-48
MsaG017572	MsaG044932	0.817250	6.322107e-52	1.294373e-49
MsaG017572	MsaG045923	0.815107	1.894479e-51	3.672075e-49
MsaG017572	MsaG046755	0.818959	2.607925e-52	5.580693e-50
MsaG017572	MsaG046805	0.814067	3.211473e-51	6.064020e-49
MsaG017572	MsaG046866	0.809935	2.528730e-50	4.311516e-48
MsaG017572	MsaG047003	0.831992	2.202512e-55	6.751761e-53
MsaG017572	MsaG001472	0.804623	3.336358e-49	5.013979e-47
MsaG017572	MsaG005823	0.856978	4.341923e-62	3.013967e-59
MsaG017572	MsaG000821	0.806306	1.486517e-49	2.323699e-47
MsaG017572	MsaG007676	0.805396	2.303616e-49	3.524656e-47
MsaG017572	MsaG008384	0.827928	2.131800e-54	5.818158e-52
MsaG017572	MsaG010542	0.810199	2.219474e-50	3.808589e-48
MsaG017572	MsaG006009	0.815271	1.743218e-51	3.392995e-49
MsaG017572	MsaG010025	0.817132	6.718562e-52	1.371366e-49
MsaG017572	MsaG012731	0.815019	1.981349e-51	3.831976e-49
MsaG017572	MsaG019774	0.821777	5.931590e-53	1.367363e-50
MsaG017572	MsaG020180	0.801759	1.297702e-48	1.825767e-46
MsaG017572	MsaG020996	0.830962	3.937490e-55	1.171338e-52
MsaG017572	MsaG018137	0.808134	6.119975e-50	9.991399e-48
MsaG017572	MsaG028128	0.823963	1.846166e-53	4.514542e-51
MsaG017572	MsaG026524	0.834126	6.521526e-56	2.128035e-53
MsaG017572	MsaG031895	0.800421	2.429621e-48	3.316420e-46
MsaG017572	MsaG030906	0.848158	1.386089e-59	7.056466e-57
MsaG017572	MsaG030574	0.847667	1.889616e-59	9.462792e-57
MsaG017572	MsaG035353	0.846665	3.548348e-59	1.718067e-56
MsaG017572	MsaG036398	0.831281	3.289613e-55	9.876541e-53
MsaG017572	MsaG036208	0.858040	2.111526e-62	1.524855e-59
MsaG017572	MsaG036860	0.809832	2.660410e-50	4.524947e-48
MsaG017572	MsaG042302	0.820124	1.418093e-52	3.129281e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017572	MtrunA17_Chr3g0141941	93.287	432	29	0	1	432	1	432	0.0	848
MsaG017572	MtrunA17_Chr3g0141941	91.954	87	4	2	508	591	431	517	4.44e-42	159
MsaG017572	MtrunA17_Chr1g0155681	60.526	646	181	19	1	591	1	627	0.0	691
MsaG017572	MtrunA17_Chr4g0025521	56.429	280	109	6	162	434	217	490	8.47e-86	281
MsaG017572	MtrunA17_Chr1g0177751	55.556	279	109	5	162	430	161	434	3.73e-85	278
MsaG017572	MtrunA17_Chr8g0373801	51.095	274	117	5	158	420	384	651	1.32e-82	276
MsaG017572	MtrunA17_Chr7g0267481	55.472	265	108	4	163	420	172	433	4.80e-82	270
MsaG017572	MtrunA17_Chr5g0403251	50.000	272	117	4	161	421	337	600	4.02e-81	270
MsaG017572	MtrunA17_Chr8g0387321	47.518	282	122	6	141	408	163	432	1.24e-75	252
MsaG017572	MtrunA17_Chr3g0141931	46.075	293	124	8	156	431	159	434	3.43e-72	238
MsaG017572	MtrunA17_Chr7g0240371	37.278	338	173	9	158	489	133	437	4.02e-60	208
MsaG017572	MtrunA17_Chr4g0008591	40.278	288	145	5	158	441	192	456	2.80e-58	205
MsaG017572	MtrunA17_Chr2g0327021	40.000	310	137	7	158	441	244	530	4.79e-58	205
MsaG017572	MtrunA17_Chr4g0028701	42.000	300	132	7	158	415	241	540	1.25e-56	202
MsaG017572	MtrunA17_Chr1g0151681	39.464	261	146	6	159	414	240	493	1.09e-43	163

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017572	AT1G75410.1	48.166	409	178	8	32	430	47	431	1.07e-108	336
MsaG017572	AT1G75410.2	48.166	409	178	8	32	430	47	431	1.07e-108	336
MsaG017572	AT1G19700.1	49.161	417	163	14	34	428	46	435	2.04e-108	336
MsaG017572	AT1G19700.3	49.161	417	163	14	34	428	46	435	2.04e-108	336
MsaG017572	AT1G19700.5	49.161	417	163	14	34	428	46	435	2.04e-108	336
MsaG017572	AT1G19700.4	49.161	417	163	14	34	428	46	435	2.04e-108	336
MsaG017572	AT1G19700.2	49.161	417	163	14	34	428	46	435	2.04e-108	336
MsaG017572	AT2G16400.1	44.589	462	173	13	141	591	93	482	2.52e-107	331
MsaG017572	AT4G34610.2	45.351	441	176	14	165	591	143	532	2.57e-102	320
MsaG017572	AT4G34610.4	45.351	441	176	14	165	591	143	532	2.57e-102	320
MsaG017572	AT4G34610.3	45.351	441	176	14	165	591	143	532	2.57e-102	320
MsaG017572	AT4G34610.1	45.351	441	176	14	165	591	143	532	2.57e-102	320
MsaG017572	AT1G75410.3	46.092	371	166	8	32	392	47	393	1.05e-87	278
MsaG017572	AT2G23760.2	53.612	263	98	6	165	413	240	492	9.52e-80	264
MsaG017572	AT2G23760.1	53.612	263	98	6	165	413	240	492	9.52e-80	264
MsaG017572	AT2G23760.3	53.612	263	98	6	165	413	240	492	9.52e-80	264
MsaG017572	AT2G35940.3	50.189	265	112	5	158	406	186	446	2.61e-77	258
MsaG017572	AT2G35940.1	50.189	265	112	5	158	406	186	446	2.61e-77	258
MsaG017572	AT2G35940.2	50.189	265	112	5	158	406	186	446	2.61e-77	258
MsaG017572	AT4G36870.2	50.562	267	109	6	161	414	311	567	1.99e-76	258
MsaG017572	AT4G36870.1	50.562	267	109	6	161	414	311	567	1.99e-76	258
MsaG017572	AT2G23760.4	44.762	315	98	7	165	413	240	544	1.15e-69	238
MsaG017572	AT2G27220.1	47.177	248	100	4	168	415	82	298	1.44e-66	223
MsaG017572	AT2G27220.3	47.177	248	100	4	168	415	82	298	1.44e-66	223
MsaG017572	AT2G27220.2	43.985	266	100	5	168	415	82	316	1.35e-62	213
MsaG017572	AT5G41410.1	39.506	324	144	7	232	538	265	553	1.34e-61	215
MsaG017572	AT1G75430.1	41.758	273	130	7	163	419	17	276	1.39e-61	206
MsaG017572	AT4G36870.4	47.561	246	106	6	161	393	311	546	6.16e-61	211
MsaG017572	AT4G36870.3	47.541	244	105	6	161	391	311	544	6.10e-60	209
MsaG017572	AT5G02030.1	42.701	274	120	6	158	415	166	418	4.22e-55	196
MsaG017572	AT2G27990.1	41.985	262	123	5	158	415	258	494	6.67e-51	185
MsaG017572	AT4G32980.1	38.433	268	135	6	156	414	195	441	2.07e-46	170
MsaG017572	AT4G32980.2	38.433	268	135	6	156	414	195	441	2.07e-46	170
MsaG017572	AT1G75430.2	34.667	225	118	7	163	371	17	228	8.03e-30	119
MsaG017572	AT2G27990.2	34.404	218	114	5	158	371	258	450	3.31e-25	109

Find 118 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCATCTTTGGACATGGTTGC+TGG	0.171008	3:-110769192	MsaT017572.1:CDS
TTAATGCGCGTGTGCGTCTT+TGG	0.241731	3:-110768544	MsaT017572.1:CDS
GACTATCATTTCACAGATTC+AGG	0.242730	3:-110768035	MsaT017572.1:CDS
ATCCAACAAGTTCTGTCTTT+CGG	0.296338	3:+110769567	None:intergenic
GCAAATTGTGGTGTCATCTT+TGG	0.309506	3:-110769205	MsaT017572.1:CDS
TCATGAGATTAATAATAAAT+TGG	0.315537	3:-110768420	MsaT017572.1:CDS
CCCAACCAAGCATTCTCTTC+AGG	0.317247	3:-110770264	MsaT017572.1:CDS
CATCTTTGGACATGGTTGCT+GGG	0.322770	3:-110769191	MsaT017572.1:CDS
CCTTAAGATATTGAGAGTTT+AGG	0.323728	3:+110769782	None:intergenic
CCTAAACTCTCAATATCTTA+AGG	0.324664	3:-110769782	MsaT017572.1:CDS
CTCCAAGGTAAAAGAGATTA+TGG	0.332690	3:-110768443	MsaT017572.1:CDS
TTTCCATTCCACGTTGCTTT+CGG	0.349688	3:+110769725	None:intergenic
CACATATGATTTAATAGAGT+TGG	0.365395	3:-110768222	MsaT017572.1:CDS
GAAATATACAAAGAAGAGTT+TGG	0.368762	3:-110768506	MsaT017572.1:CDS
CGCAAAGCAAGTGTAGTATA+TGG	0.389402	3:+110769153	None:intergenic
AAGTGATTCAAAGGAACCTT+GGG	0.404482	3:-110769077	MsaT017572.1:CDS
ATTCTCTTCAGGGTCCTATA+TGG	0.406017	3:-110770253	MsaT017572.1:CDS
CAGTCTATGCAAATAACTTC+GGG	0.408568	3:-110769637	MsaT017572.1:CDS
TATGGTATCAGGTGGCAAAT+TGG	0.411576	3:-110768571	MsaT017572.1:intron
AATGTGATAGATTGTGGAAA+TGG	0.412066	3:-110768314	MsaT017572.1:CDS
TTGAGAGTTTAGGAAAATGT+TGG	0.412411	3:+110769792	None:intergenic
CGAAACCGGTGTCATTATAC+TGG	0.413951	3:+110769995	None:intergenic
GTTACGAAAACACTCCCTTT+TGG	0.415298	3:+110769858	None:intergenic
GGAAAGCAACAACACATGTT+TGG	0.421673	3:-110768014	MsaT017572.1:CDS
TCATTATACTGGTATTGAAA+TGG	0.422426	3:+110770006	None:intergenic
CTGTTTCAATACTTCGTGCT+TGG	0.423440	3:-110768933	MsaT017572.1:CDS
CCAACCAAGCATTCTCTTCA+GGG	0.428447	3:-110770263	MsaT017572.1:CDS
TTGTATATTTCTTCAACCAT+TGG	0.430158	3:+110768518	None:intergenic
AACTGGTTTGACAAGGAATC+AGG	0.432153	3:-110768681	MsaT017572.1:intron
TCCTTTGAATCACTTGAACT+TGG	0.447044	3:+110769085	None:intergenic
ATTCATCAGCGATACGAAAC+CGG	0.447145	3:+110769981	None:intergenic
ATAATGCTAGCTAGGCAAAC+TGG	0.452403	3:-110768698	MsaT017572.1:CDS
CCCTGAAGAGAATGCTTGGT+TGG	0.454991	3:+110770263	None:intergenic
TTAGATATAGTAGTTCCCTT+TGG	0.461116	3:+110769946	None:intergenic
ACATATGATTTAATAGAGTT+GGG	0.462874	3:-110768221	MsaT017572.1:CDS
CAAAAGGCACTTCAGCATCT+TGG	0.463824	3:-110769003	MsaT017572.1:CDS
GGAGGGACAGATGCATTAGA+AGG	0.464657	3:+110770027	None:intergenic
TGCATGGAAAGCATGTCTTC+CGG	0.466072	3:-110769898	MsaT017572.1:CDS
ATCTTTGGACATGGTTGCTG+GGG	0.467421	3:-110769190	MsaT017572.1:CDS
CAGAGAAAATAATGCTAGCT+AGG	0.467771	3:-110768706	MsaT017572.1:CDS
CAAGTTCTGTCTTTCGGCTG+AGG	0.471991	3:+110769573	None:intergenic
ACCAAGTTTAACACACCTAT+AGG	0.472281	3:-110770162	MsaT017572.1:CDS
TACACGTTCTCTCGTGGAAG+AGG	0.476889	3:+110768343	None:intergenic
CGAGGTGAACATATCCATAT+AGG	0.479681	3:+110770239	None:intergenic
ATAGTCACTGTGTCGCCTAT+AGG	0.482382	3:+110770147	None:intergenic
CAAGTGATTCAAAGGAACCT+TGG	0.483068	3:-110769078	MsaT017572.1:CDS
CTCCTCAGATCACTGCCTGC+AGG	0.488491	3:-110769830	MsaT017572.1:CDS
GCCTATAGGTGTGTTAAACT+TGG	0.490982	3:+110770161	None:intergenic
GGTAATGTCATGAAATCCTC+CGG	0.496563	3:+110769879	None:intergenic
GGATATCTCACAAGAAGGAT+TGG	0.496624	3:+110769594	None:intergenic
TCAGTCTATGCAAATAACTT+CGG	0.500629	3:-110769638	MsaT017572.1:CDS
TCACAATGTCTCTCTTGCAT+TGG	0.504072	3:-110768168	MsaT017572.1:CDS
GGATTGGAATTAGAATCATT+AGG	0.508994	3:+110769610	None:intergenic
AGCATTGGAATGCTCATCAA+TGG	0.509427	3:+110770119	None:intergenic
CCAACAGCTTAGGCAACAAA+AGG	0.510811	3:-110769019	MsaT017572.1:CDS
CGAGACTAAGAGATAACTCT+TGG	0.512889	3:+110770061	None:intergenic
ACACCACAATTTGCATTCGA+TGG	0.516116	3:+110769214	None:intergenic
TACATGAGAGCTGTAAGCAT+TGG	0.517302	3:+110770104	None:intergenic
CCTGAAGAGAATGCTTGGTT+GGG	0.517326	3:+110770264	None:intergenic
GATTTCATGACATTACCAAA+AGG	0.521517	3:-110769873	MsaT017572.1:CDS
TGTCCGAAAGCAACGTGGAA+TGG	0.521567	3:-110769728	MsaT017572.1:CDS
TCATCTGAAAATACACTCCA+AGG	0.523657	3:-110768458	MsaT017572.1:CDS
CAAGAGTTATCTCTTAGTCT+CGG	0.528666	3:-110770060	MsaT017572.1:CDS
AGCCGAAAGACAGAACTTGT+TGG	0.531781	3:-110769569	MsaT017572.1:CDS
TAAGCTGTTGGTCCACGTAC+CGG	0.539458	3:+110769031	None:intergenic
AAGAGTTATCTCTTAGTCTC+GGG	0.540585	3:-110770059	MsaT017572.1:CDS
AGGACCCTGAAGAGAATGCT+TGG	0.541911	3:+110770259	None:intergenic
GTATTCCTTCTTGTTCCCCA+AGG	0.544341	3:+110769061	None:intergenic
ATTTCATGACATTACCAAAA+GGG	0.544569	3:-110769872	MsaT017572.1:CDS
TCTTTGGACATGGTTGCTGG+GGG	0.546073	3:-110769189	MsaT017572.1:CDS
ACCAAGTTCAAGTGATTCAA+AGG	0.549397	3:-110769086	MsaT017572.1:CDS
GGTACGTGGACCAACAGCTT+AGG	0.555219	3:-110769029	MsaT017572.1:CDS
GAATGCTTGTCGTCTTCCAA+AGG	0.555351	3:-110769962	MsaT017572.1:CDS
TTGGTGTTATGCGGCAAGCA+TGG	0.558919	3:-110768984	MsaT017572.1:CDS
CACTGCCTGCAGGATTCACA+AGG	0.565086	3:-110769820	MsaT017572.1:CDS
TTCAGCATCTTGGTGTTATG+CGG	0.567244	3:-110768993	MsaT017572.1:CDS
CAACTCTATTAAATCATATG+TGG	0.568553	3:+110768223	None:intergenic
TTATACTGGTATTGAAATGG+AGG	0.572976	3:+110770009	None:intergenic
AAGAAGGAATACCTCGTCTC+CGG	0.574564	3:-110769050	MsaT017572.1:CDS
GATAATCCCAACGATAGTGA+TGG	0.576493	3:-110769673	MsaT017572.1:CDS
GGCAGTGATCTGAGGAGTGA+GGG	0.576558	3:+110769836	None:intergenic
AGGAACCTTGGGGAACAAGA+AGG	0.579072	3:-110769066	MsaT017572.1:CDS
AATACCTCGTCTCCGGTACG+TGG	0.579283	3:-110769043	MsaT017572.1:CDS
ACATAATAATAATCAGACAT+TGG	0.582601	3:-110768087	MsaT017572.1:CDS
AATGCTTGTCGTCTTCCAAA+GGG	0.582756	3:-110769961	MsaT017572.1:CDS
ATTGAAAAGTGTCGAATGCA+TGG	0.591816	3:-110769914	MsaT017572.1:CDS
TTGAGAAACTGTGAAAGCGA+TGG	0.592333	3:-110768143	MsaT017572.1:CDS
GGTAACTTTACAACTGTGGA+TGG	0.593227	3:-110768200	MsaT017572.1:CDS
GTCTATGCAAATAACTTCGG+GGG	0.594987	3:-110769635	MsaT017572.1:CDS
CAATACCAGTATAATGACAC+CGG	0.603044	3:-110770000	MsaT017572.1:CDS
TCAATATCTTAAGGCTACAC+AGG	0.606571	3:-110769773	MsaT017572.1:CDS
GATTATCCAATCCAATGTTG+CGG	0.607575	3:+110769689	None:intergenic
TTTACAACTGTGGATGGTGG+TGG	0.611372	3:-110768194	MsaT017572.1:CDS
GAAAATTGCATGGTAACCAA+AGG	0.613715	3:-110768292	MsaT017572.1:CDS
GGTTGATACCAGTTACCCCA+AGG	0.615136	3:-110768732	MsaT017572.1:intron
AACTTTACAACTGTGGATGG+TGG	0.616544	3:-110768197	MsaT017572.1:CDS
CTAGGCAAACTGGTTTGACA+AGG	0.616619	3:-110768688	MsaT017572.1:CDS
GCTGAGGATATCTCACAAGA+AGG	0.617588	3:+110769589	None:intergenic
GATTCATTGTAGTAATTGTG+AGG	0.618741	3:+110770204	None:intergenic
AGGCAGTGATCTGAGGAGTG+AGG	0.618773	3:+110769835	None:intergenic
TGGTCCACGTACCGGAGACG+AGG	0.620141	3:+110769039	None:intergenic
ATCCTGCAGGCAGTGATCTG+AGG	0.622811	3:+110769828	None:intergenic
TGTGCGTCTTTGGAAACCAA+TGG	0.624209	3:-110768534	MsaT017572.1:CDS
TAGTAATTGTGAGGTAACAA+AGG	0.627033	3:+110770213	None:intergenic
TGTGGTGTCATCTTTGGACA+TGG	0.628842	3:-110769199	MsaT017572.1:CDS
GTTGGGTAACTTTACAACTG+TGG	0.629995	3:-110768204	MsaT017572.1:CDS
TATGGTTACCTCATCCAACA+TGG	0.631595	3:+110769525	None:intergenic
TGTGGAAATGGAAAATTGCA+TGG	0.634656	3:-110768302	MsaT017572.1:CDS
ATGCAAGAGAGACATTGTGA+TGG	0.664466	3:+110768171	None:intergenic
TATACTGGTATTGAAATGGA+GGG	0.666797	3:+110770010	None:intergenic
GTGAGGTAACAAAGGACTCG+AGG	0.675570	3:+110770221	None:intergenic
CTGCCATCGAATGCAAATTG+TGG	0.686632	3:-110769217	MsaT017572.1:CDS
ATGGAAAGCATGTCTTCCGG+AGG	0.687343	3:-110769895	MsaT017572.1:CDS
TCTATGCAAATAACTTCGGG+GGG	0.707179	3:-110769634	MsaT017572.1:CDS
GTTAATGTCCGAAAGCAACG+TGG	0.708048	3:-110769733	MsaT017572.1:CDS
AGTCTATGCAAATAACTTCG+GGG	0.713697	3:-110769636	MsaT017572.1:CDS
AGTGATTCAAAGGAACCTTG+GGG	0.732244	3:-110769076	MsaT017572.1:CDS
CAAGCATGGAGACCTCAGAG+AGG	0.733220	3:-110768970	MsaT017572.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	110767980	110770292	110767980	ID=MsaG017572
Chr3	mRNA	110767980	110770292	110767980	ID=MsaT017572.1;Parent=MsaG017572
Chr3	exon	110767980	110768582	110767980	ID=MsaT017572.1.exon4;Parent=MsaT017572.1
Chr3	CDS	110767980	110768582	110767980	ID=cds.MsaT017572.1;Parent=MsaT017572.1
Chr3	exon	110768682	110768742	110768682	ID=MsaT017572.1.exon3;Parent=MsaT017572.1
Chr3	CDS	110768682	110768742	110768682	ID=cds.MsaT017572.1;Parent=MsaT017572.1
Chr3	exon	110768910	110769262	110768910	ID=MsaT017572.1.exon2;Parent=MsaT017572.1
Chr3	CDS	110768910	110769262	110768910	ID=cds.MsaT017572.1;Parent=MsaT017572.1
Chr3	exon	110769534	110770292	110769534	ID=MsaT017572.1.exon1;Parent=MsaT017572.1
Chr3	CDS	110769534	110770292	110769534	ID=cds.MsaT017572.1;Parent=MsaT017572.1

Gene Sequence

>MsaT017572.1

ATGTATCCCAACCAAGCATTCTCTTCAGGGTCCTATATGGATATGTTCACCTCGAGTCCTTTGTTACCTCACAATTACTACAATGAATCTGCAGCAAAACAAAATGAAACCAAGTTTAACACACCTATAGGCGACACAGTGACTATACAGTCCATTGATGAGCATTCCAATGCTTACAGCTCTCATGTAGATGAGCAAAATATACAATGCCAAGAGTTATCTCTTAGTCTCGGGACACTACTGCCTTCTAATGCATCTGTCCCTCCATTTCAATACCAGTATAATGACACCGGTTTCGTATCGCTGATGAATGCTTGTCGTCTTCCAAAGGGAACTACTATATCTAACGAAGATGAATTGAAAAGTGTCGAATGCATGGAAAGCATGTCTTCCGGAGGATTTCATGACATTACCAAAAGGGAGTGTTTTCGTAACCCTCACTCCTCAGATCACTGCCTGCAGGATTCACAAGGTTTTTCCAACATTTTCCTAAACTCTCAATATCTTAAGGCTACACAGGAGTTACTTGATGAGATAGTTAATGTCCGAAAGCAACGTGGAATGGAAAAGCAAGAAAAAATCCGCAACATTGGATTGGATAATCCCAACGATAGTGATGGAAAATTTACTAGTCAGTCTATGCAAATAACTTCGGGGGGACCTAATGATTCTAATTCCAATCCTTCTTGTGAGATATCCTCAGCCGAAAGACAGAACTTGTTGGATAAGAAGACAAAGCTTTTGTCCATGTTGGATGAGGTAGACAAAAGATACAGACAGTACTGCCATCGAATGCAAATTGTGGTGTCATCTTTGGACATGGTTGCTGGGGGTGGAGCAGCAGAGCCATATACTACACTTGCTTTGCGAACAATTTCGCGTCAGTTTCGCTGCTTGCGCGATGCTATCAGCAACCAAGTTCAAGTGATTCAAAGGAACCTTGGGGAACAAGAAGGAATACCTCGTCTCCGGTACGTGGACCAACAGCTTAGGCAACAAAAGGCACTTCAGCATCTTGGTGTTATGCGGCAAGCATGGAGACCTCAGAGAGGACTTCCCGAAAACTCTGTTTCAATACTTCGTGCTTGGCTCTTTGAACATTTTCTTAATCCTTACCCCAAGGATTCAGAGAAAATAATGCTAGCTAGGCAAACTGGTTTGACAAGGAATCAGGTGGCAAATTGGTTCATTAATGCGCGTGTGCGTCTTTGGAAACCAATGGTTGAAGAAATATACAAAGAAGAGTTTGGTGACTCTGAAATGAACTGCAATTTTTCATCTGAAAATACACTCCAAGGTAAAAGAGATTATGGTCATGAGATTAATAATAAATTGGAAGAAGAGTCACAAGACAATGTACAAATTATTACTAGTGATCATAGTGTACAAGCCTCTTCCACGAGAGAACGTGTAGAAAAAAATGTGATAGATTGTGGAAATGGAAAATTGCATGGTAACCAAAGGCTCAGCATAAAAAATGGCTTTTATTCACAAATAGATTCTGATTCTGCCACATATGATTTAATAGAGTTGGGTAACTTTACAACTGTGGATGGTGGTGGCCATCACAATGTCTCTCTTGCATTGGAGTTGAGAAACTGTGAAAGCGATGGATTAGCTACATCTGATGATGCCATTCATAAAAGACATAATAATAATCAGACATTGGTTTCTTCTTCACAGAGTACTGATTTACTAGACTATCATTTCACAGATTCAGGAAAGCAACAACACATGTTTGGCAATACTCATCTGTTGCATGAATTTGTCGTATGA

Protein sequence

>MsaT017572.1

MYPNQAFSSGSYMDMFTSSPLLPHNYYNESAAKQNETKFNTPIGDTVTIQSIDEHSNAYSSHVDEQNIQCQELSLSLGTLLPSNASVPPFQYQYNDTGFVSLMNACRLPKGTTISNEDELKSVECMESMSSGGFHDITKRECFRNPHSSDHCLQDSQGFSNIFLNSQYLKATQELLDEIVNVRKQRGMEKQEKIRNIGLDNPNDSDGKFTSQSMQITSGGPNDSNSNPSCEISSAERQNLLDKKTKLLSMLDEVDKRYRQYCHRMQIVVSSLDMVAGGGAAEPYTTLALRTISRQFRCLRDAISNQVQVIQRNLGEQEGIPRLRYVDQQLRQQKALQHLGVMRQAWRPQRGLPENSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEMNCNFSSENTLQGKRDYGHEINNKLEEESQDNVQIITSDHSVQASSTRERVEKNVIDCGNGKLHGNQRLSIKNGFYSQIDSDSATYDLIELGNFTTVDGGGHHNVSLALELRNCESDGLATSDDAIHKRHNNNQTLVSSSQSTDLLDYHFTDSGKQQHMFGNTHLLHEFVV*