AlfalfaGEDB | MsaG017595

M. sativa ssp. caerulea / MsaG017595

KEGG: -
GO: -
PFAM: PF05142.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017595	XP_013462189.1	97.235	217	6	0	1	217	78	294	1.15e-154	440

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017595	sp\|Q9FXH7\|SRS7_ARATH	50.424	236	86	10	1	211	111	340	1.50e-63	203

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017595	tr\|A0A072V2G0\|A0A072V2G0_MEDTR	97.235	217	6	0	1	217	78	294	5.51e-155	440

TFs/TRs:

Gene ID	Type	Classification
MsaG017595	TF	SRS

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000529	MsaG017595	0.821267	7.767081e-53	1.766547e-50
MsaG006093	MsaG017595	0.806746	1.201229e-49	1.897363e-47
MsaG006951	MsaG017595	0.835944	2.281721e-56	7.862136e-54
MsaG009427	MsaG017595	0.826331	5.119785e-54	1.336225e-51
MsaG010548	MsaG017595	0.805189	2.544220e-49	3.874214e-47
MsaG012189	MsaG017595	0.823353	2.560395e-53	6.158612e-51
MsaG017595	MsaG019570	0.817008	7.161550e-52	1.457100e-49
MsaG017595	MsaG028258	0.803361	6.086054e-49	8.883076e-47
MsaG017595	MsaG029770	0.856368	6.546970e-62	4.445607e-59
MsaG017595	MsaG008516	0.804563	3.433517e-49	5.152953e-47
MsaG017595	MsaG031457	0.824687	1.249832e-53	3.117100e-51
MsaG017595	MsaG030836	0.808426	5.305021e-50	8.722104e-48
MsaG017595	MsaG036797	0.808831	4.351096e-50	7.223987e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017595	MtrunA17_Chr3g0142171	97.235	217	6	0	1	217	78	294	1.06e-158	440
MsaG017595	MtrunA17_Chr1g0155791	61.818	220	67	9	7	213	120	335	3.23e-64	202
MsaG017595	MtrunA17_Chr8g0372461	55.455	220	73	9	6	211	118	326	4.88e-62	196
MsaG017595	MtrunA17_Chr5g0404781	50.216	231	92	11	4	214	95	322	1.94e-54	176
MsaG017595	MtrunA17_Chr4g0035591	41.081	185	78	6	6	188	17	172	1.72e-38	132
MsaG017595	MtrunA17_Chr5g0441921	46.541	159	67	5	9	152	124	279	1.11e-31	118
MsaG017595	MtrunA17_Chr3g0082511	41.615	161	66	7	9	149	134	286	2.33e-28	108
MsaG017595	MtrunA17_Chr8g0353111	38.043	184	86	6	9	167	124	304	7.37e-28	107
MsaG017595	MtrunA17_Chr2g0281741	63.158	38	14	0	6	43	147	184	3.10e-13	65.9
MsaG017595	MtrunA17_Chr0c01g0489181	57.895	38	16	0	6	43	64	101	8.78e-12	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017595	AT1G19790.2	50.424	236	86	10	1	211	111	340	1.53e-64	203
MsaG017595	AT1G19790.1	50.424	236	86	10	1	211	111	340	1.53e-64	203
MsaG017595	AT1G75520.1	47.755	245	78	9	1	213	117	343	1.66e-60	193
MsaG017595	AT5G66350.1	52.036	221	74	9	9	211	120	326	7.74e-57	183
MsaG017595	AT3G51060.1	51.316	228	84	11	7	211	142	365	1.99e-55	181
MsaG017595	AT5G66350.3	51.389	216	74	8	9	206	120	322	2.62e-55	179
MsaG017595	AT5G66350.2	51.869	214	72	8	9	204	120	320	3.19e-55	179
MsaG017595	AT2G18120.1	52.632	152	60	4	3	152	66	207	1.60e-43	145
MsaG017595	AT4G36260.1	53.125	160	61	5	3	150	88	245	3.77e-43	147
MsaG017595	AT2G18120.2	50.667	150	64	3	3	152	66	205	8.27e-41	139
MsaG017595	AT2G21400.4	40.670	209	89	8	6	210	6	183	2.84e-40	136
MsaG017595	AT2G21400.2	40.670	209	89	8	6	210	7	184	3.05e-40	136
MsaG017595	AT2G21400.3	40.976	205	79	8	6	210	7	169	1.62e-38	131
MsaG017595	AT2G21400.1	40.976	205	79	8	6	210	6	168	2.19e-38	131
MsaG017595	AT5G12330.1	41.848	184	81	7	9	169	112	292	4.97e-31	116
MsaG017595	AT5G12330.2	41.848	184	81	7	9	169	112	292	4.97e-31	116
MsaG017595	AT5G12330.4	44.720	161	66	5	9	149	199	356	7.08e-31	117
MsaG017595	AT5G33210.2	57.955	88	34	3	7	91	15	102	3.72e-26	97.8
MsaG017595	AT5G33210.1	57.955	88	34	3	7	91	50	137	1.71e-25	98.2
MsaG017595	AT3G54430.1	36.486	148	77	4	5	149	37	170	4.78e-23	92.0
MsaG017595	AT5G12330.3	82.609	46	8	0	9	54	112	157	1.59e-21	89.0

Find 66 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACACACCGTATTAATTAATT+AGG	0.252373	3:+111023095	None:intergenic
GCACCTATTGAAGGTTCTTC+TGG	0.278915	3:-111023269	MsaT017595.1:CDS
TATTAATTAATTAGGATGTT+GGG	0.323138	3:+111023103	None:intergenic
GCAATACTGGTGTAAAGATT+TGG	0.352201	3:+111023290	None:intergenic
AGCTCCGCTCAATGCTTTCA+TGG	0.372783	3:-111023150	MsaT017595.1:CDS
ACCTTCAATAGGTGCAATAC+TGG	0.385502	3:+111023277	None:intergenic
CCGTTTCGTCGTCGAGATCA+TGG	0.410173	3:-111024111	MsaT017595.1:CDS
AGAGATGTTGTTGTCGTTCA+CGG	0.410405	3:+111024142	None:intergenic
GTGGTAGGGATGGGTGGTTG+AGG	0.413319	3:+111024033	None:intergenic
CGTTCACGGCGTTTAGCAGC+TGG	0.414213	3:+111024156	None:intergenic
CCACCAGAGGTGAGTTCTCC+AGG	0.416959	3:-111023437	MsaT017595.1:CDS
TGCTACTCAGGGTTGGAGTT+GGG	0.418590	3:-111023467	MsaT017595.1:intron
GTATTAATTAATTAGGATGT+TGG	0.434180	3:+111023102	None:intergenic
ACCAGTATTGCACCTATTGA+AGG	0.434447	3:-111023278	MsaT017595.1:CDS
TGGTAGGGATGGGTGGTTGA+GGG	0.435264	3:+111024034	None:intergenic
CTGCTACTCAGGGTTGGAGT+TGG	0.435308	3:-111023468	MsaT017595.1:intron
GGGATGGGTGGTTGAGGGCA+AGG	0.438435	3:+111024039	None:intergenic
AAACACATGTTAAGAGTACT+TGG	0.440077	3:-111024182	MsaT017595.1:CDS
ATTGAGCGGAGCTGAGTAAA+GGG	0.455523	3:+111023160	None:intergenic
GTTCTCCAGGAGTAACCTTT+CGG	0.458523	3:-111023424	MsaT017595.1:CDS
AAAGGAATTCTCTATGATCA+AGG	0.458943	3:-111023317	MsaT017595.1:CDS
TGTTCAATGCGCGTATCAAA+CGG	0.468547	3:-111023366	MsaT017595.1:CDS
TGGTTGAGGGCAAGGAAGAG+AGG	0.470671	3:+111024047	None:intergenic
CTCAATGCTTTCATGGCAGC+TGG	0.470851	3:-111023143	MsaT017595.1:CDS
TACGCGCATTGAACATGATC+TGG	0.473149	3:+111023374	None:intergenic
CCACCAGAAGAACCTTCAAT+AGG	0.475713	3:+111023266	None:intergenic
ATTAATTAATTAGGATGTTG+GGG	0.494474	3:+111023104	None:intergenic
CCATGATCTCGACGACGAAA+CGG	0.500595	3:+111024111	None:intergenic
AATAATTATATACCTGTGGT+AGG	0.506589	3:+111024018	None:intergenic
ACACACCGAAAGGTTACTCC+TGG	0.521457	3:+111023419	None:intergenic
CCTATTGAAGGTTCTTCTGG+TGG	0.522897	3:-111023266	MsaT017595.1:CDS
TATCAAACGGCTGTGAACAT+AGG	0.523500	3:-111023353	MsaT017595.1:CDS
CATTGAGCGGAGCTGAGTAA+AGG	0.525999	3:+111023159	None:intergenic
TAGTGGAGGAATGAATTGTC+AGG	0.528718	3:-111024283	MsaT017595.1:CDS
TTATATACCTGTGGTAGGGA+TGG	0.531535	3:+111024023	None:intergenic
GAACTTGTTGTAAGAGTCGA+GGG	0.537704	3:-111024215	MsaT017595.1:CDS
ATTGAAGGTTCTTCTGGTGG+AGG	0.544276	3:-111023263	MsaT017595.1:CDS
ATACCTGTGGTAGGGATGGG+TGG	0.544823	3:+111024027	None:intergenic
ACTCCTGGAGAACTCACCTC+TGG	0.545749	3:+111023434	None:intergenic
CGACACACAGAAATTAATCA+AGG	0.547183	3:-111024075	MsaT017595.1:CDS
CCTGGAGAACTCACCTCTGG+TGG	0.547209	3:+111023437	None:intergenic
AGTAAAGGGAAGGGTCGAAT+GGG	0.547906	3:+111023174	None:intergenic
GAGTAAAGGGAAGGGTCGAA+TGG	0.551923	3:+111023173	None:intergenic
GTGTGTGAGAGTGAGTTCAT+TGG	0.567712	3:-111023402	MsaT017595.1:CDS
TATATACCTGTGGTAGGGAT+GGG	0.567730	3:+111024024	None:intergenic
CAAACGGCTGTGAACATAGG+AGG	0.569957	3:-111023350	MsaT017595.1:CDS
ATAATTATATACCTGTGGTA+GGG	0.570372	3:+111024019	None:intergenic
AGCGGAGCTGAGTAAAGGGA+AGG	0.586546	3:+111023164	None:intergenic
TTTGGTATAATGAGGCGTAG+TGG	0.591379	3:-111024300	None:intergenic
ATACTGGTGTAAAGATTTGG+AGG	0.592879	3:+111023293	None:intergenic
CAACCACCCATCCCTACCAC+AGG	0.593236	3:-111024030	MsaT017595.1:intron
AGAACTTGTTGTAAGAGTCG+AGG	0.607559	3:-111024216	MsaT017595.1:CDS
GTCATGAAATCAAGTTGTTG+AGG	0.608390	3:+111023230	None:intergenic
AGGGTCGAATGGGATACCGC+TGG	0.611002	3:+111023184	None:intergenic
CTGGAGAACTCACCTCTGGT+GGG	0.629708	3:+111023438	None:intergenic
ACTCACTCTCACACACCGAA+AGG	0.630422	3:+111023409	None:intergenic
GGTATAATGAGGCGTAGTGG+AGG	0.645542	3:-111024297	None:intergenic
TTAATTAATTAGGATGTTGG+GGG	0.645627	3:+111023105	None:intergenic
AACACATGTTAAGAGTACTT+GGG	0.648062	3:-111024181	MsaT017595.1:CDS
AAACGGCTGTGAACATAGGA+GGG	0.648226	3:-111023349	MsaT017595.1:CDS
GCGGAGCTGAGTAAAGGGAA+GGG	0.669522	3:+111023165	None:intergenic
GCAACTACAGCTACAACCAG+CGG	0.670400	3:-111023200	MsaT017595.1:CDS
GTTGGGACAATTCCCACCAG+AGG	0.679398	3:-111023450	MsaT017595.1:CDS
GCTGCCATGAAAGCATTGAG+CGG	0.695869	3:+111023146	None:intergenic
GTGAGAGTGAGTTCATTGGA+CGG	0.712874	3:-111023398	MsaT017595.1:CDS
GGAATGAATTGTCAGGACTG+TGG	0.748727	3:-111024276	MsaT017595.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	111023109	111024313	111023109	ID=MsaG017595
Chr3	mRNA	111023109	111024313	111023109	ID=MsaT017595.1;Parent=MsaG017595
Chr3	exon	111023109	111023479	111023109	ID=MsaT017595.1.exon2;Parent=MsaT017595.1
Chr3	CDS	111023109	111023479	111023109	ID=cds.MsaT017595.1;Parent=MsaT017595.1
Chr3	exon	111024031	111024313	111024031	ID=MsaT017595.1.exon1;Parent=MsaT017595.1
Chr3	CDS	111024031	111024313	111024031	ID=cds.MsaT017595.1;Parent=MsaT017595.1

Gene Sequence

>MsaT017595.1

ATGAGGCGTAGTGGAGGAATGAATTGTCAGGACTGTGGTAATCAAGCAAAGAAAGATTGTATACATCTAAGATGCAGAACTTGTTGTAAGAGTCGAGGGTTTCAGTGTCAAACACATGTTAAGAGTACTTGGGTTCCAGCTGCTAAACGCCGTGAACGACAACAACATCTCTCTGCGTTACCGTTTCGTCGTCGAGATCATGGAGACAATTACAAACGACACACAGAAATTAATCAAGGTGCTACCTCTCTTCCTTGCCCTCAACCACCCATCCCTACCACAGGGTTGGAGTTGGGACAATTCCCACCAGAGGTGAGTTCTCCAGGAGTAACCTTTCGGTGTGTGAGAGTGAGTTCATTGGACGGTCCAGATCATGTTCAATGCGCGTATCAAACGGCTGTGAACATAGGAGGGCATGTTTTCAAAGGAATTCTCTATGATCAAGGTCCTCCAAATCTTTACACCAGTATTGCACCTATTGAAGGTTCTTCTGGTGGAGGTCATCATCAACCTCAACAACTTGATTTCATGACTGCAACAGCAACTACAGCTACAACCAGCGGTATCCCATTCGACCCTTCCCTTTACTCAGCTCCGCTCAATGCTTTCATGGCAGCTGGTACACAATTTTTCCACCCCCAACATCCTAATTAA

Protein sequence

>MsaT017595.1

MRRSGGMNCQDCGNQAKKDCIHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQHLSALPFRRRDHGDNYKRHTEINQGATSLPCPQPPIPTTGLELGQFPPEVSSPGVTFRCVRVSSLDGPDHVQCAYQTAVNIGGHVFKGILYDQGPPNLYTSIAPIEGSSGGGHHQPQQLDFMTATATTATTSGIPFDPSLYSAPLNAFMAAGTQFFHPQHPN*