AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG017598

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG017598 MtrunA17_Chr3g0142191 100.000 229 0 0 1 229 1 229 4.86e-175 479
MsaG017598 MtrunA17_Chr5g0404951 54.091 220 95 4 1 215 1 219 1.38e-75 228
MsaG017598 MtrunA17_Chr3g0125241 45.775 142 77 0 1 142 26 167 1.86e-43 145
MsaG017598 MtrunA17_Chr1g0159661 43.662 142 80 0 1 142 1 142 3.38e-39 133
MsaG017598 MtrunA17_Chr2g0279821 41.463 164 80 3 1 155 1 157 3.01e-35 125
MsaG017598 MtrunA17_Chr8g0351041 43.125 160 81 3 1 153 1 157 2.73e-33 117
MsaG017598 MtrunA17_Chr4g0049541 37.313 201 102 4 1 192 1 186 8.81e-33 118
MsaG017598 MtrunA17_Chr2g0284911 39.801 201 102 5 1 187 16 211 1.10e-32 119
MsaG017598 MtrunA17_Chr8g0380021 42.424 165 89 3 1 162 17 178 1.49e-32 118
MsaG017598 MtrunA17_Chr4g0057151 42.581 155 78 3 1 148 1 151 1.67e-32 117
MsaG017598 MtrunA17_Chr8g0351051 35.443 237 125 7 1 228 1 218 2.96e-32 117
MsaG017598 MtrunA17_Chr8g0351031 41.250 160 84 3 1 153 1 157 1.43e-31 115
MsaG017598 MtrunA17_Chr3g0097101 38.857 175 91 4 1 166 16 183 1.47e-31 115
MsaG017598 MtrunA17_Chr3g0122251 41.615 161 86 2 1 153 1 161 2.20e-31 115
MsaG017598 MtrunA17_Chr7g0246431 41.818 165 81 4 1 156 1 159 3.43e-31 114
MsaG017598 MtrunA17_Chr4g0061691 42.353 170 91 3 1 165 1 168 4.99e-31 114
MsaG017598 MtrunA17_Chr7g0220121 39.205 176 89 4 1 166 1 168 7.20e-31 114
MsaG017598 MtrunA17_Chr3g0077501 37.576 165 82 3 1 153 1 156 1.02e-30 113
MsaG017598 MtrunA17_Chr5g0420081 39.429 175 96 3 1 168 1 172 2.84e-30 112
MsaG017598 MtrunA17_Chr5g0411691 38.854 157 77 3 1 147 1 148 6.36e-30 111
MsaG017598 MtrunA17_Chr7g0220111 42.405 158 85 3 1 153 1 157 1.86e-29 110
MsaG017598 MtrunA17_Chr8g0366231 40.854 164 79 5 1 153 1 157 2.78e-29 109
MsaG017598 MtrunA17_Chr6g0474371 38.235 170 98 2 1 164 1 169 4.45e-29 107
MsaG017598 MtrunA17_Chr1g0164791 35.404 161 96 1 1 153 1 161 4.56e-29 108
MsaG017598 MtrunA17_Chr6g0455511 41.139 158 87 3 1 153 1 157 1.29e-28 108
MsaG017598 MtrunA17_Chr5g0420091 40.252 159 88 3 1 153 1 158 1.08e-27 105
MsaG017598 MtrunA17_Chr5g0412461 41.436 181 87 5 1 170 1 173 1.47e-27 105
MsaG017598 MtrunA17_Chr4g0018421 35.632 174 104 4 1 168 1 172 4.01e-26 100
MsaG017598 MtrunA17_Chr4g0061671 38.411 151 89 2 1 148 1 150 6.63e-26 99.4
MsaG017598 MtrunA17_Chr5g0412271 42.073 164 75 5 1 152 1 156 1.08e-25 100
MsaG017598 MtrunA17_Chr4g0049901 38.462 169 77 4 1 153 27 184 7.32e-25 98.2
MsaG017598 MtrunA17_Chr5g0427401 39.752 161 82 4 1 153 1 154 1.52e-24 97.1
MsaG017598 MtrunA17_Chr1g0204111 33.529 170 105 2 1 164 17 184 3.61e-24 96.7
MsaG017598 MtrunA17_Chr1g0173161 68.333 60 19 0 1 60 1 60 4.11e-24 91.7
MsaG017598 MtrunA17_Chr5g0427921 65.000 60 21 0 1 60 1 60 6.16e-24 90.5
MsaG017598 MtrunA17_Chr4g0020221 38.994 159 86 3 1 151 1 156 7.25e-23 93.2
MsaG017598 MtrunA17_Chr2g0308251 64.407 59 21 0 1 59 1 59 1.78e-22 87.8
MsaG017598 MtrunA17_Chr7g0246381 62.903 62 23 0 1 62 1 62 5.90e-22 85.9
MsaG017598 MtrunA17_Chr8g0377561 64.912 57 20 0 1 57 1 57 7.06e-22 86.7
MsaG017598 MtrunA17_Chr4g0044071 63.158 57 21 0 1 57 1 57 1.01e-19 81.3
MsaG017598 MtrunA17_Chr5g0425191 63.158 57 21 0 1 57 1 57 1.14e-19 80.9
MsaG017598 MtrunA17_Chr3g0134451 42.400 125 62 4 1 122 1 118 2.22e-19 85.1
MsaG017598 MtrunA17_Chr8g0379021 40.157 127 60 3 2 127 12 123 9.39e-19 80.5
MsaG017598 MtrunA17_Chr1g0166611 60.000 55 22 0 13 67 17 71 1.41e-17 76.3
MsaG017598 MtrunA17_Chr8g0357771 36.691 139 81 3 1 133 1 138 3.35e-17 76.6
MsaG017598 MtrunA17_Chr2g0333981 35.443 158 81 7 1 143 11 162 3.21e-16 73.6
MsaG017598 MtrunA17_Chr4g0052061 33.333 135 69 4 1 135 1 114 1.50e-15 71.6
MsaG017598 MtrunA17_Chr5g0417661 56.604 53 23 0 1 53 56 108 2.49e-15 70.1
MsaG017598 MtrunA17_Chr1g0175611 48.387 62 32 0 1 62 1 62 5.67e-15 70.1
MsaG017598 MtrunA17_Chr4g0060841 56.604 53 23 0 1 53 1 53 5.68e-15 72.8
MsaG017598 MtrunA17_Chr8g0376821 48.387 62 32 0 1 62 1 62 6.16e-15 70.5
MsaG017598 MtrunA17_Chr4g0018951 39.669 121 55 5 14 121 24 139 8.56e-15 69.7
MsaG017598 MtrunA17_Chr3g0089141 33.835 133 74 3 2 133 9 128 1.07e-14 70.9
MsaG017598 MtrunA17_Chr1g0208581 49.206 63 32 0 2 64 9 71 1.11e-14 70.5
MsaG017598 MtrunA17_Chr2g0325971 34.400 125 71 4 2 119 9 129 1.45e-14 70.5
MsaG017598 MtrunA17_Chr1g0208561 47.619 63 33 0 2 64 9 71 1.55e-14 70.1
MsaG017598 MtrunA17_Chr1g0169761 48.387 62 32 0 1 62 1 62 1.76e-14 68.9
MsaG017598 MtrunA17_Chr2g0317451 28.249 177 99 4 2 154 9 181 1.82e-14 70.1
MsaG017598 MtrunA17_Chr2g0317481 28.249 177 99 4 2 154 9 181 1.95e-14 70.1
MsaG017598 MtrunA17_Chr8g0356071 47.222 72 36 1 1 70 1 72 2.10e-14 68.6
MsaG017598 MtrunA17_Chr1g0180591 46.774 62 33 0 1 62 1 62 2.37e-14 68.9
MsaG017598 MtrunA17_Chr1g0175601 46.875 64 34 0 1 64 1 64 2.62e-14 68.6
MsaG017598 MtrunA17_Chr5g0419601 48.438 64 33 0 1 64 8 71 5.39e-14 68.9
MsaG017598 MtrunA17_Chr3g0099421 54.237 59 27 0 2 60 34 92 6.07e-14 68.9
MsaG017598 MtrunA17_Chr1g0149391 47.143 70 35 1 2 71 9 76 7.73e-14 68.6
MsaG017598 MtrunA17_Chr2g0292791 47.143 70 35 1 2 71 9 76 8.80e-14 68.2
MsaG017598 MtrunA17_Chr1g0187361 47.619 63 33 0 2 64 9 71 1.13e-13 68.2
MsaG017598 MtrunA17_Chr4g0052081 41.892 74 41 1 1 72 1 74 1.14e-13 67.0
MsaG017598 MtrunA17_Chr3g0099411 45.714 70 36 1 2 71 9 76 1.21e-13 67.8
MsaG017598 MtrunA17_Chr1g0206701 47.619 63 33 0 2 64 9 71 1.29e-13 67.8
MsaG017598 MtrunA17_Chr4g0074101 46.667 60 32 0 1 60 1 60 1.53e-13 67.0
MsaG017598 MtrunA17_Chr1g0206721 45.714 70 36 1 2 71 9 76 1.59e-13 67.8
MsaG017598 MtrunA17_Chr1g0188671 47.619 63 33 0 2 64 47 109 1.68e-13 68.2
MsaG017598 MtrunA17_Chr8g0355091 47.619 63 33 0 2 64 9 71 2.02e-13 67.4
MsaG017598 MtrunA17_Chr5g0422941 47.619 63 33 0 2 64 9 71 2.81e-13 67.0
MsaG017598 MtrunA17_Chr5g0422421 45.714 70 36 1 2 71 9 76 3.50e-13 66.6
MsaG017598 MtrunA17_Chr3g0111841 49.123 57 29 0 8 64 2 58 4.45e-13 62.4
MsaG017598 MtrunA17_Chr1g0206991 44.286 70 37 1 2 71 9 76 4.72e-13 65.5
MsaG017598 MtrunA17_Chr2g0300421 44.444 63 35 0 2 64 9 71 1.17e-12 63.9
MsaG017598 MtrunA17_Chr6g0457851 27.815 151 95 4 1 138 11 160 5.41e-12 64.3
MsaG017598 MtrunA17_Chr3g0119901 40.845 71 40 1 1 71 8 76 6.04e-12 62.8
MsaG017598 MtrunA17_Chr2g0300441 46.667 60 32 0 5 64 12 71 7.44e-12 62.8
MsaG017598 MtrunA17_Chr3g0085241 42.188 64 37 0 1 64 40 103 1.88e-11 62.0
MsaG017598 MtrunA17_Chr1g0206691 26.506 166 98 3 11 154 1 164 2.19e-11 61.2
MsaG017598 MtrunA17_Chr3g0089151 39.189 74 43 1 2 75 9 80 2.95e-11 59.3
MsaG017598 MtrunA17_Chr8g0345001 30.216 139 76 4 3 121 19 156 3.22e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG017598 AT3G54340.1 56.897 232 95 2 1 228 1 231 7.58e-94 275
MsaG017598 AT5G20240.1 36.019 211 120 2 1 210 1 197 5.36e-40 137
MsaG017598 AT5G20240.2 43.662 142 80 0 1 142 1 142 1.07e-37 129
MsaG017598 AT4G18960.1 35.537 242 134 7 2 228 18 252 5.02e-36 128
MsaG017598 AT5G60910.1 44.068 177 91 3 1 171 1 175 3.94e-35 125
MsaG017598 AT4G11880.2 43.750 160 79 4 1 153 1 156 1.08e-33 119
MsaG017598 AT4G11880.3 43.750 160 79 4 1 153 1 156 1.08e-33 119
MsaG017598 AT5G13790.2 44.767 172 81 5 1 166 1 164 1.44e-33 122
MsaG017598 AT4G11880.4 46.000 150 70 4 1 143 1 146 2.73e-33 120
MsaG017598 AT4G11880.1 46.000 150 70 4 1 143 1 146 2.73e-33 120
MsaG017598 AT2G45660.2 42.515 167 71 3 1 153 1 156 2.90e-33 118
MsaG017598 AT2G45660.1 42.515 167 71 3 1 153 1 156 1.63e-32 117
MsaG017598 AT2G45650.1 34.188 234 132 6 1 228 1 218 4.31e-32 117
MsaG017598 AT4G22950.2 41.290 155 79 4 1 148 1 150 5.85e-32 115
MsaG017598 AT4G09960.1 38.650 163 83 3 1 153 1 156 8.14e-32 116
MsaG017598 AT4G09960.6 38.650 163 83 3 1 153 2 157 8.43e-32 116
MsaG017598 AT5G13790.1 43.195 169 85 4 1 166 1 161 1.09e-31 117
MsaG017598 AT4G09960.5 38.650 163 83 3 1 153 11 166 1.24e-31 116
MsaG017598 AT4G09960.3 38.650 163 83 3 1 153 27 182 1.80e-31 116
MsaG017598 AT4G22950.3 41.290 155 79 4 1 148 1 150 1.92e-31 115
MsaG017598 AT4G22950.1 41.290 155 79 4 1 148 1 150 1.92e-31 115
MsaG017598 AT3G57230.2 43.333 150 65 3 1 139 1 141 2.51e-31 112
MsaG017598 AT3G57230.1 40.361 166 79 3 1 155 1 157 3.17e-31 115
MsaG017598 AT3G57230.4 40.361 166 79 3 1 155 1 157 3.17e-31 115
MsaG017598 AT5G51870.1 38.547 179 94 7 1 169 1 173 4.65e-31 114
MsaG017598 AT4G37940.1 39.759 166 80 3 1 155 1 157 6.88e-31 114
MsaG017598 AT2G42830.2 39.130 161 87 3 1 154 16 172 1.50e-30 113
MsaG017598 AT2G42830.1 39.375 160 86 3 1 153 16 171 1.59e-30 113
MsaG017598 AT5G23260.2 36.410 195 119 2 1 190 1 195 1.66e-30 113
MsaG017598 AT5G51870.4 39.053 169 90 6 1 162 1 163 1.75e-30 112
MsaG017598 AT5G51870.3 38.983 177 92 7 1 167 11 181 1.88e-30 112
MsaG017598 AT4G09960.4 38.415 164 84 3 1 154 96 252 2.05e-30 115
MsaG017598 AT5G23260.4 36.410 195 119 2 1 190 17 211 2.68e-30 113
MsaG017598 AT4G09960.2 40.940 149 71 3 1 139 1 142 3.42e-30 112
MsaG017598 AT3G58780.1 38.750 160 87 3 1 153 16 171 4.52e-30 112
MsaG017598 AT3G58780.5 38.750 160 87 3 1 153 22 177 4.80e-30 112
MsaG017598 AT5G51870.2 39.490 157 77 6 1 146 1 150 6.14e-30 110
MsaG017598 AT3G61120.1 35.909 220 113 6 1 210 1 202 1.06e-29 111
MsaG017598 AT4G37940.4 40.244 164 77 4 1 152 1 155 1.06e-29 110
MsaG017598 AT4G24540.1 37.113 194 114 3 1 189 1 191 1.13e-29 110
MsaG017598 AT5G15800.1 43.396 159 83 4 1 153 1 158 1.29e-29 111
MsaG017598 AT5G23260.3 41.379 145 83 1 1 143 1 145 1.78e-29 110
MsaG017598 AT5G15800.2 43.396 159 83 4 1 153 1 158 1.89e-29 111
MsaG017598 AT4G37940.3 41.333 150 68 3 1 139 1 141 2.00e-29 108
MsaG017598 AT5G51870.5 39.490 157 77 6 1 146 24 173 2.04e-29 109
MsaG017598 AT3G58780.2 39.869 153 88 2 1 153 16 164 3.24e-29 110
MsaG017598 AT3G02310.2 43.046 151 82 2 1 147 1 151 4.21e-29 108
MsaG017598 AT3G02310.1 43.038 158 85 3 1 153 1 158 5.87e-29 109
MsaG017598 AT5G23260.1 41.667 144 82 1 1 142 17 160 8.37e-29 109
MsaG017598 AT3G58780.4 41.216 148 76 3 1 141 16 159 8.57e-29 109
MsaG017598 AT1G24260.1 42.593 162 82 5 1 153 1 160 3.05e-28 107
MsaG017598 AT1G24260.3 37.870 169 82 4 1 154 1 161 3.76e-28 107
MsaG017598 AT3G30260.1 40.523 153 83 4 1 147 1 151 5.74e-28 107
MsaG017598 AT2G22630.1 37.195 164 87 3 1 155 1 157 6.15e-28 106
MsaG017598 AT2G22630.2 37.195 164 87 3 1 155 1 157 6.15e-28 106
MsaG017598 AT1G24260.2 39.053 169 79 5 1 153 1 161 6.53e-28 107
MsaG017598 AT2G03710.3 37.748 151 90 1 1 147 1 151 9.78e-28 104
MsaG017598 AT2G03710.2 36.943 157 95 1 1 153 1 157 1.01e-27 106
MsaG017598 AT2G14210.1 40.506 158 75 3 1 147 1 150 1.13e-27 105
MsaG017598 AT2G03710.1 36.943 157 95 1 1 153 1 157 1.15e-27 106
MsaG017598 AT2G14210.2 40.506 158 75 3 1 147 1 150 1.28e-27 105
MsaG017598 AT1G26310.1 37.288 177 105 2 1 171 1 177 2.44e-27 105
MsaG017598 AT1G69120.2 41.250 160 84 4 1 153 1 157 2.76e-27 104
MsaG017598 AT1G69120.1 41.250 160 84 4 1 153 1 157 3.56e-27 105
MsaG017598 AT5G62165.17 36.774 155 87 3 1 148 1 151 5.37e-27 102
MsaG017598 AT5G62165.12 36.774 155 87 3 1 148 1 151 5.37e-27 102
MsaG017598 AT5G62165.11 36.774 155 87 3 1 148 1 151 5.37e-27 102
MsaG017598 AT3G58780.3 34.426 183 88 3 1 153 16 196 7.48e-27 104
MsaG017598 AT2G22540.3 41.463 164 77 4 1 153 1 156 1.08e-26 103
MsaG017598 AT2G22540.1 41.463 164 77 4 1 153 1 156 1.08e-26 103
MsaG017598 AT3G57390.3 33.854 192 109 5 1 177 1 189 1.31e-26 102
MsaG017598 AT5G62165.6 37.333 150 83 3 1 143 1 146 1.61e-26 100
MsaG017598 AT5G62165.9 37.333 150 83 3 1 143 1 146 1.61e-26 100
MsaG017598 AT5G62165.7 37.333 150 83 3 1 143 1 146 1.61e-26 100
MsaG017598 AT5G62165.8 37.333 150 83 3 1 143 1 146 1.61e-26 100
MsaG017598 AT5G62165.13 37.333 150 83 3 1 143 1 146 1.61e-26 100
MsaG017598 AT3G57390.1 33.854 192 109 5 1 177 1 189 2.34e-26 102
MsaG017598 AT5G51860.2 35.632 174 97 4 1 166 1 167 2.78e-26 101
MsaG017598 AT5G62165.3 36.250 160 91 3 1 153 1 156 3.81e-26 101
MsaG017598 AT5G62165.1 36.250 160 91 3 1 153 1 156 3.81e-26 101
MsaG017598 AT5G62165.2 36.250 160 91 3 1 153 1 156 3.81e-26 101
MsaG017598 AT5G51860.1 35.632 174 97 4 1 166 1 167 4.29e-26 100
MsaG017598 AT5G62165.10 38.514 148 80 3 1 141 1 144 1.62e-25 99.4
MsaG017598 AT5G62165.4 38.514 148 80 3 1 141 1 144 1.62e-25 99.4
MsaG017598 AT2G22540.2 41.509 159 79 4 1 153 1 151 2.65e-24 97.1
MsaG017598 AT5G10140.4 32.749 171 89 3 1 160 1 156 2.19e-22 90.5
MsaG017598 AT5G62165.14 65.000 60 21 0 1 60 1 60 3.80e-22 87.8
MsaG017598 AT5G65070.1 30.851 188 113 3 1 175 1 184 2.76e-21 88.2
MsaG017598 AT1G71692.1 52.632 76 35 1 1 76 1 75 8.73e-21 87.0
MsaG017598 AT5G10140.2 33.333 159 80 3 1 148 1 144 1.19e-20 85.5
MsaG017598 AT5G10140.1 33.333 159 80 3 1 148 1 144 1.47e-20 86.3
MsaG017598 AT5G65070.4 33.813 139 88 2 1 139 1 135 3.19e-20 84.0
MsaG017598 AT5G10140.3 33.333 159 80 3 1 148 1 144 3.54e-20 84.7
MsaG017598 AT5G65050.2 31.928 166 95 5 1 159 1 155 1.74e-19 82.8
MsaG017598 AT5G65050.3 31.928 166 95 5 1 159 1 155 2.09e-19 83.2
MsaG017598 AT5G65050.1 31.447 159 91 5 1 152 1 148 4.30e-19 82.0
MsaG017598 AT5G65080.3 32.168 143 93 2 1 143 8 146 1.03e-18 81.3
MsaG017598 AT5G65070.5 29.730 185 97 5 1 155 1 182 1.13e-18 81.6
MsaG017598 AT5G65050.5 33.125 160 90 5 1 159 1 144 1.48e-18 80.5
MsaG017598 AT5G65070.2 29.358 218 108 6 1 175 1 215 2.70e-18 80.9
MsaG017598 AT5G65070.3 31.507 219 103 9 1 175 1 216 3.51e-18 80.5
MsaG017598 AT5G65080.2 32.867 143 91 3 1 143 8 145 3.78e-18 80.1
MsaG017598 AT1G22130.1 66.667 54 18 0 1 54 1 54 3.80e-18 82.0
MsaG017598 AT1G77980.1 64.815 54 19 0 1 54 1 54 9.13e-18 80.9
MsaG017598 AT5G65060.1 29.870 154 82 4 1 143 1 139 1.65e-16 75.5
MsaG017598 AT5G65060.2 43.836 73 40 1 1 73 1 72 1.99e-16 74.7
MsaG017598 AT5G65060.3 29.870 154 82 4 1 143 1 139 2.64e-16 74.7
MsaG017598 AT1G18750.4 58.491 53 22 0 1 53 1 53 7.31e-16 75.9
MsaG017598 AT1G18750.1 58.491 53 22 0 1 53 1 53 7.97e-16 75.9
MsaG017598 AT1G18750.3 58.491 53 22 0 1 53 1 53 1.01e-15 75.9
MsaG017598 AT1G77080.4 32.026 153 100 2 1 153 1 149 2.32e-15 72.4
MsaG017598 AT2G03060.3 39.785 93 55 1 1 93 1 92 3.86e-15 73.9
MsaG017598 AT2G03060.7 39.785 93 55 1 1 93 1 92 3.86e-15 73.9
MsaG017598 AT2G03060.1 39.785 93 55 1 1 93 1 92 3.86e-15 73.9
MsaG017598 AT2G03060.2 39.785 93 55 1 1 93 1 92 4.06e-15 73.9
MsaG017598 AT1G77080.11 33.117 154 97 3 1 153 1 149 6.02e-15 70.9
MsaG017598 AT1G77080.5 32.026 153 100 2 1 153 1 149 6.56e-15 70.5
MsaG017598 AT1G31140.1 31.944 144 92 2 1 139 1 143 6.97e-15 71.2
MsaG017598 AT1G77080.12 31.250 160 90 2 1 154 1 146 7.57e-15 69.7
MsaG017598 AT1G77080.2 31.447 159 89 2 1 153 1 145 1.16e-14 70.1
MsaG017598 AT1G72350.1 30.612 147 85 2 2 131 43 189 1.36e-14 70.9
MsaG017598 AT1G01530.1 50.000 60 30 0 1 60 6 65 1.62e-14 70.9
MsaG017598 AT2G34440.1 43.836 73 39 1 1 71 1 73 2.19e-14 68.9
MsaG017598 AT1G31140.2 32.653 147 89 3 1 139 1 145 4.52e-14 68.9
MsaG017598 AT1G77950.3 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
MsaG017598 AT1G77950.2 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
MsaG017598 AT1G77950.1 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
MsaG017598 AT1G77950.4 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
MsaG017598 AT4G37435.1 52.632 57 27 0 1 57 1 57 1.38e-13 67.4
MsaG017598 AT3G66656.1 48.333 60 31 0 1 60 1 60 2.26e-13 66.6
MsaG017598 AT1G65360.1 45.161 62 34 0 1 62 6 67 5.27e-13 66.2
MsaG017598 AT1G69540.1 52.830 53 25 0 1 53 1 53 7.94e-13 67.0
MsaG017598 AT4G36590.1 50.820 61 30 0 2 62 7 67 8.44e-13 66.2
MsaG017598 AT5G60440.1 32.609 138 77 5 2 138 7 129 9.42e-13 66.6
MsaG017598 AT1G47760.1 33.333 126 72 3 1 121 1 119 9.65e-13 64.7
MsaG017598 AT1G69540.2 52.830 53 25 0 1 53 1 53 9.72e-13 67.0
MsaG017598 AT1G77080.8 46.575 73 38 1 1 73 1 72 1.05e-12 65.5
MsaG017598 AT2G24840.1 27.638 199 118 4 1 183 62 250 1.63e-12 65.5
MsaG017598 AT3G04100.1 41.667 60 35 0 2 61 14 73 3.49e-12 63.9
MsaG017598 AT1G29962.1 45.000 60 33 0 2 61 8 67 2.14e-11 61.2
MsaG017598 AT1G28460.1 45.000 60 33 0 2 61 8 67 3.40e-11 60.5

Find 50 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATTGGATTCTCAAATTT+AGG 0.238867 3:+111063630 MsaT017598.1:CDS
TCAACTTTACCTTCTTCCTT+TGG 0.281706 3:-111063338 None:intergenic
CAACTTTACCTTCTTCCTTT+GGG 0.311919 3:-111063337 None:intergenic
TGTTCTCTATTCTCTTGATC+TGG 0.318834 3:-111059200 None:intergenic
CACTGTTCTTTGTGATGCTA+AGG 0.392741 3:+111059287 MsaT017598.1:CDS
GCTCCTCCATTGTGAGGATT+AGG 0.402175 3:-111063690 None:intergenic
GAGGCTTCTTGAGGATGAAA+TGG 0.410025 3:+111059822 MsaT017598.1:CDS
AGAAACTGAAAGATGTCAAT+AGG 0.417053 3:+111059637 MsaT017598.1:CDS
GGAATCTTCGCAAGGAGATT+AGG 0.438224 3:+111059658 MsaT017598.1:CDS
TTCATGAAGCTTGCCAGTGC+TGG 0.445387 3:-111059328 None:intergenic
GGGGAGTACGAGTCTGTGAT+TGG 0.478663 3:+111063615 MsaT017598.1:CDS
CAACAGACTCCTGCGTGACT+TGG 0.486936 3:+111063452 MsaT017598.1:CDS
ATTATCATGTTCTCCAGCAC+TGG 0.494724 3:+111059315 MsaT017598.1:CDS
GTAGTTTAATAATGAGAGAG+AGG 0.503057 3:+111063425 MsaT017598.1:intron
TACGTACTAGGCAGAGGATG+GGG 0.507362 3:+111059767 MsaT017598.1:intron
TGGAGGAGCATCAGCTGCCT+CGG 0.511038 3:+111063704 MsaT017598.1:CDS
TTGAAATGATGGACAATGGA+GGG 0.529931 3:+111063595 MsaT017598.1:CDS
TCTGTGGAACTCTCATTATG+AGG 0.531523 3:+111059512 MsaT017598.1:CDS
ACAAAGAACAGTGAGCTCAT+TGG 0.534621 3:-111059277 None:intergenic
GAAAGAAACATACGAGGCGG+AGG 0.547284 3:-111059361 None:intergenic
GATTGACACCCAAAGGAAGA+AGG 0.549485 3:+111063329 MsaT017598.1:CDS
CTTGCGCTCACGAATAGCCT+TGG 0.554248 3:-111059854 None:intergenic
TGAAATGATGGACAATGGAG+GGG 0.558395 3:+111063596 MsaT017598.1:CDS
GATCAATATCAGATGACTGT+AGG 0.558840 3:+111059483 MsaT017598.1:CDS
TGAAATGGACAAGGCTGCCA+AGG 0.561225 3:+111059837 MsaT017598.1:CDS
ACTACGTACTAGGCAGAGGA+TGG 0.565678 3:+111059765 MsaT017598.1:intron
CTACGTACTAGGCAGAGGAT+GGG 0.571534 3:+111059766 MsaT017598.1:intron
TTGTGAGGATTAGGATGAGT+AGG 0.571730 3:-111063681 None:intergenic
CAAGGCTATTCGTGAGCGCA+AGG 0.573130 3:+111059855 MsaT017598.1:CDS
ACTTACTCAAAACGAAGGAA+TGG 0.578899 3:+111059240 MsaT017598.1:CDS
GGAAGAGCTGAGGCTTCTTG+AGG 0.588608 3:+111059813 MsaT017598.1:CDS
CAAATCAGATTGACACCCAA+AGG 0.596522 3:+111063322 MsaT017598.1:CDS
TTGTCCATCATTTCAAAACG+TGG 0.601318 3:-111063588 None:intergenic
GCTGATGCTCCTCCATTGTG+AGG 0.602305 3:-111063696 None:intergenic
AAAGAAACATACGAGGCGGA+GGG 0.606316 3:-111059360 None:intergenic
ATCTGAGCATGGAAGAGCTG+AGG 0.615257 3:+111059803 MsaT017598.1:CDS
TGTCAATAGGAATCTTCGCA+AGG 0.629338 3:+111059650 MsaT017598.1:CDS
ACGTACTAGGCAGAGGATGG+GGG 0.634592 3:+111059768 MsaT017598.1:intron
CATCCTAATCCTCACAATGG+AGG 0.635153 3:+111063687 MsaT017598.1:CDS
AAGCTCAATGCAAACATGCG+TGG 0.640903 3:-111063654 None:intergenic
TCTTGAGGATGAAATGGACA+AGG 0.641493 3:+111059828 MsaT017598.1:CDS
ATGTCTGAATGATCTGAGCA+TGG 0.649883 3:+111059792 MsaT017598.1:CDS
GGTTATCTAGCTATGGCTCG+AGG 0.656910 3:+111059171 None:intergenic
AGGGTAAGTGGTGAGATCCG+AGG 0.669094 3:-111063721 None:intergenic
TTTGAAATGATGGACAATGG+AGG 0.672358 3:+111063594 MsaT017598.1:CDS
AAGTAACTTACTCAAAACGA+AGG 0.681799 3:+111059235 MsaT017598.1:CDS
ACTCATCCTAATCCTCACAA+TGG 0.687965 3:+111063684 MsaT017598.1:CDS
AAGAAACATACGAGGCGGAG+GGG 0.689447 3:-111059359 None:intergenic
TGACTGTAGGAATTGATCTG+TGG 0.697006 3:+111059496 MsaT017598.1:CDS
TGATACATACCAAGTCACGC+AGG 0.717237 3:-111063461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 111059183 111063755 111059183 ID=MsaG017598
Chr3 mRNA 111059183 111063755 111059183 ID=MsaT017598.1;Parent=MsaG017598
Chr3 exon 111059183 111059370 111059183 ID=MsaT017598.1.exon1;Parent=MsaT017598.1
Chr3 CDS 111059183 111059370 111059183 ID=cds.MsaT017598.1;Parent=MsaT017598.1
Chr3 exon 111059467 111059533 111059467 ID=MsaT017598.1.exon2;Parent=MsaT017598.1
Chr3 CDS 111059467 111059533 111059467 ID=cds.MsaT017598.1;Parent=MsaT017598.1
Chr3 exon 111059618 111059679 111059618 ID=MsaT017598.1.exon3;Parent=MsaT017598.1
Chr3 CDS 111059618 111059679 111059618 ID=cds.MsaT017598.1;Parent=MsaT017598.1
Chr3 exon 111059777 111059876 111059777 ID=MsaT017598.1.exon4;Parent=MsaT017598.1
Chr3 CDS 111059777 111059876 111059777 ID=cds.MsaT017598.1;Parent=MsaT017598.1
Chr3 exon 111063309 111063350 111063309 ID=MsaT017598.1.exon5;Parent=MsaT017598.1
Chr3 CDS 111063309 111063350 111063309 ID=cds.MsaT017598.1;Parent=MsaT017598.1
Chr3 exon 111063429 111063473 111063429 ID=MsaT017598.1.exon6;Parent=MsaT017598.1
Chr3 CDS 111063429 111063473 111063429 ID=cds.MsaT017598.1;Parent=MsaT017598.1
Chr3 exon 111063570 111063755 111063570 ID=MsaT017598.1.exon7;Parent=MsaT017598.1
Chr3 CDS 111063570 111063755 111063570 ID=cds.MsaT017598.1;Parent=MsaT017598.1
Gene Sequence

>MsaT017598.1

ATGGCTCGAGGAAAGATCCAGATCAAGAGAATAGAGAACACAACGAACAGACAAGTAACTTACTCAAAACGAAGGAATGGTCTTTTCAAGAAGGCCAATGAGCTCACTGTTCTTTGTGATGCTAAGGTTTCTATTATCATGTTCTCCAGCACTGGCAAGCTTCATGAATACATTAGCCCCTCCGCCTCAACAAAGCAGTTTTTCGATCAATATCAGATGACTGTAGGAATTGATCTGTGGAACTCTCATTATGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGATGTCAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGGGAATGTCTGAATGATCTGAGCATGGAAGAGCTGAGGCTTCTTGAGGATGAAATGGACAAGGCTGCCAAGGCTATTCGTGAGCGCAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAATAATGAGAGAGAGGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGAAATGATGGACAATGGAGGGGAGTACGAGTCTGTGATTGGATTCTCAAATTTAGGTCCACGCATGTTTGCATTGAGCTTACAGCCTACTCATCCTAATCCTCACAATGGAGGAGCATCAGCTGCCTCGGATCTCACCACTTACCCTTTACTTTTTTAG
Protein sequence

>MsaT017598.1

MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSASTKQFFDQYQMTVGIDLWNSHYENMQENLKKLKDVNRNLRKEIRQRMGECLNDLSMEELRLLEDEMDKAAKAIRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAEDPRFEMMDNGGEYESVIGFSNLGPRMFALSLQPTHPNPHNGGASAASDLTTYPLLF*