AlfalfaGEDB | MsaG017626

M. sativa ssp. caerulea / MsaG017626

KEGG: K06620
GO: GO:0000902 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006082 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022402 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051782 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901657 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02319.23

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017626	XP_024633944.2	91.908	346	14	2	4	342	30	368	0.0	618

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017626	sp\|Q9FV70\|E2FC_ARATH	48.366	306	112	9	46	342	123	391	1.66e-79	251

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017626	tr\|A0A396J346\|A0A396J346_MEDTR	91.908	346	14	2	4	342	30	368	0.0	618

TFs/TRs:

Gene ID	Type	Classification
MsaG017626	TF	E2F-DP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017626	MtrunA17_Chr3g0142581	91.908	346	14	2	4	342	30	368	0.0	618
MsaG017626	MtrunA17_Chr1g0177351	43.169	366	170	11	2	342	67	419	3.03e-77	244
MsaG017626	MtrunA17_Chr4g0025881	41.925	322	156	6	45	342	100	414	8.97e-73	233

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017626	AT1G47870.1	48.366	306	112	9	46	342	123	391	1.69e-80	251
MsaG017626	AT1G47870.2	48.366	306	112	9	46	342	122	390	1.75e-80	251
MsaG017626	AT5G22220.2	41.543	337	149	7	45	342	92	419	3.04e-71	229
MsaG017626	AT5G22220.3	41.543	337	149	7	45	342	92	419	3.76e-71	229
MsaG017626	AT2G36010.3	39.193	347	173	8	26	342	112	450	1.29e-64	212
MsaG017626	AT2G36010.1	39.420	345	173	8	26	342	112	448	1.50e-64	212
MsaG017626	AT2G36010.2	36.152	343	168	9	26	342	162	479	1.79e-51	178

Find 86 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATCAAACTGATAAATTTCT+TGG	0.195269	3:+111362748	None:intergenic
TACCATTATGCTTTCCTCTT+TGG	0.206217	3:+111363066	None:intergenic
ACAAATTACTCCTACGGATT+TGG	0.244715	3:-111360495	MsaT017626.1:CDS
TCGCTTGACTCAGAGGCTTT+TGG	0.259553	3:-111360524	MsaT017626.1:CDS
TAAAACTGCTGAGATCTTAA+AGG	0.260105	3:-111362693	MsaT017626.1:intron
ATATTTACTTCCACCGTATA+TGG	0.272766	3:+111362449	None:intergenic
TGCAGGTTGATGGTGATTAT+TGG	0.282905	3:-111360372	MsaT017626.1:intron
TCTTACCCTTCCATGCTTCC+AGG	0.295518	3:-111361135	MsaT017626.1:intron
CACTCAAATGAGCAGGAATT+AGG	0.313374	3:-111360902	MsaT017626.1:intron
ACAAATGTTCTTGAAGGAAT+AGG	0.317166	3:-111362496	MsaT017626.1:CDS
ATCTTCTAACTTTGCCTGCT+TGG	0.327328	3:+111360637	None:intergenic
ACAAACTTGACCAGTGTATA+AGG	0.337642	3:-111361402	MsaT017626.1:intron
ACCTCAATGAAACTAGCTTT+TGG	0.340106	3:+111361002	None:intergenic
AAGGGTAAGAATATCTTCTT+TGG	0.354876	3:+111361148	None:intergenic
TTCAAGAGGTACAGATTTAT+CGG	0.359261	3:+111360833	None:intergenic
TTATGCTTTCCTCTTTGGTT+GGG	0.365134	3:+111363071	None:intergenic
CAATCATTCTGTACTGCCTT+TGG	0.379050	3:+111360873	None:intergenic
GACATTACAAATGTTCTTGA+AGG	0.381084	3:-111362502	MsaT017626.1:CDS
ATTATGCTTTCCTCTTTGGT+TGG	0.394432	3:+111363070	None:intergenic
ACAATTCTGTTAGGCCAACT+TGG	0.403992	3:+111360335	None:intergenic
TAACTTGATGCTCCAGTTCG+TGG	0.414132	3:+111362318	None:intergenic
AAACTTCAAAGAACCATATA+CGG	0.421244	3:-111362462	MsaT017626.1:CDS
ACCTGTATTTGAAATCTGAT+TGG	0.422930	3:+111363013	None:intergenic
GAGGTGGGATTCAACTTATA+TGG	0.429057	3:-111360967	MsaT017626.1:CDS
AAGTTGAATCCCACCTCATC+AGG	0.430971	3:+111360973	None:intergenic
ATGATTGTTAGAAGTGCAAC+TGG	0.445965	3:-111360857	MsaT017626.1:CDS
GTCAATTCTCAGTGAAAGAA+AGG	0.446192	3:-111361309	MsaT017626.1:intron
AACCAAAGAGGAAAGCATAA+TGG	0.451388	3:-111363068	MsaT017626.1:CDS
GCCAATCAGATTTCAAATAC+AGG	0.451634	3:-111363014	MsaT017626.1:intron
CGGCTGCAGAATGGAGGGTG+TGG	0.459695	3:-111360597	MsaT017626.1:CDS
AATCGTTATGACAGTTCCTT+AGG	0.462492	3:-111362868	MsaT017626.1:intron
CAATTCTGTTAGGCCAACTT+GGG	0.473073	3:+111360336	None:intergenic
GCATCAAGTTAAATCTCTAA+AGG	0.477562	3:-111362306	MsaT017626.1:intron
GATGGACTTGAGCCACGAAC+TGG	0.489216	3:-111362330	MsaT017626.1:intron
TTGGGTTCAGTTTGAAGAAG+TGG	0.490056	3:+111363089	None:intergenic
CAGTTTGATCAATGAGGCTA+AGG	0.500273	3:-111362735	MsaT017626.1:CDS
AGTTGGCCTAACAGAATTGT+GGG	0.505242	3:-111360332	MsaT017626.1:CDS
TAAGCAACTTATTACAATCA+AGG	0.507030	3:-111361027	MsaT017626.1:CDS
TGAGGGTGTGAGTGCCAAGC+AGG	0.512509	3:-111360651	MsaT017626.1:CDS
CTGGTCAAGTTTGTATTCCT+CGG	0.512943	3:+111361411	None:intergenic
TCATTCTGTACTGCCTTTGG+TGG	0.517033	3:+111360876	None:intergenic
CAAGCACGACCACAAGTTTG+AGG	0.521197	3:-111360669	MsaT017626.1:CDS
AATTCAACAAATTACTCCTA+CGG	0.521739	3:-111360501	MsaT017626.1:CDS
AAGTTGGCCTAACAGAATTG+TGG	0.522443	3:-111360333	MsaT017626.1:CDS
AATCCCACCTCATCAGGATC+GGG	0.527403	3:+111360979	None:intergenic
AAAGGACCTGGAAGCATGGA+AGG	0.527585	3:+111361129	None:intergenic
CAGCCGTTGCTACTCCGTGA+TGG	0.529933	3:+111360614	None:intergenic
GAGTAGCAACGGCTGCAGAA+TGG	0.537502	3:-111360606	MsaT017626.1:CDS
AGGAATTAGGCTTCCACCAA+AGG	0.540877	3:-111360889	MsaT017626.1:CDS
AAGCACGACCACAAGTTTGA+GGG	0.544962	3:-111360668	MsaT017626.1:CDS
TTTCAATCAGATCCCCAAGT+TGG	0.557691	3:-111360349	MsaT017626.1:CDS
GGCTGCAGAATGGAGGGTGT+GGG	0.561995	3:-111360596	MsaT017626.1:CDS
ATTTATCAGTTTGATCAATG+AGG	0.562030	3:-111362741	MsaT017626.1:CDS
TCCAAAAGCTAGTTTCATTG+AGG	0.562628	3:-111361003	MsaT017626.1:CDS
GAATCCCACCTCATCAGGAT+CGG	0.563397	3:+111360978	None:intergenic
TTAACAGTGTTGCTCTGACT+CGG	0.564080	3:+111363119	None:intergenic
AAAGGAGCTTATAAGAAACC+TGG	0.565536	3:-111361291	MsaT017626.1:CDS
ACCTAGCTAACCTTATACAC+TGG	0.570136	3:+111361392	None:intergenic
AGGTCCCGATCCTGATGAGG+TGG	0.570705	3:-111360983	MsaT017626.1:CDS
GGTTCAGTTTGAAGAAGTGG+AGG	0.575422	3:+111363092	None:intergenic
CAGAAGAGAAGTACTTCAAG+AGG	0.575816	3:+111360819	None:intergenic
TAGCAACGGCTGCAGAATGG+AGG	0.582567	3:-111360603	MsaT017626.1:CDS
CACTCACACCCTCAAACTTG+TGG	0.587462	3:+111360660	None:intergenic
GATCCATCACGGAGTAGCAA+CGG	0.589664	3:-111360617	MsaT017626.1:CDS
TTTAAGTTCGCTTGACTCAG+AGG	0.590229	3:-111360531	MsaT017626.1:CDS
CAAACTGAACCCAACCAAAG+AGG	0.600334	3:-111363080	MsaT017626.1:CDS
AGCGAACTTAAACTCCCAGA+AGG	0.601180	3:+111360542	None:intergenic
CTTATAAGAAACCTGGAGGA+AGG	0.602931	3:-111361284	MsaT017626.1:CDS
TTGATCAATGAGGCTAAGGA+TGG	0.604623	3:-111362731	MsaT017626.1:CDS
GTGGGATTATTAGAAAACCA+AGG	0.618758	3:-111360578	MsaT017626.1:CDS
AGCAACGGCTGCAGAATGGA+GGG	0.619777	3:-111360602	MsaT017626.1:CDS
GCGAACTTAAACTCCCAGAA+GGG	0.628059	3:+111360543	None:intergenic
AATTCTGTTAGGCCAACTTG+GGG	0.629313	3:+111360337	None:intergenic
TTGAGGTCCCGATCCTGATG+AGG	0.629610	3:-111360986	MsaT017626.1:CDS
CTGGAGGAAGGTGAAAACAC+CGG	0.635878	3:-111361272	MsaT017626.1:CDS
ATTCATACATCCAAATCCGT+AGG	0.638390	3:+111360485	None:intergenic
TGGAGGAAGGTGAAAACACC+GGG	0.639040	3:-111361271	MsaT017626.1:CDS
GGTCCCGATCCTGATGAGGT+GGG	0.652728	3:-111360982	MsaT017626.1:CDS
AGTTGATAGCTTATATGCCG+AGG	0.657732	3:-111361428	MsaT017626.1:CDS
CAAAGTTAGAAGATCCATCA+CGG	0.671165	3:-111360628	MsaT017626.1:CDS
GTTGGCCTAACAGAATTGTG+GGG	0.672060	3:-111360331	MsaT017626.1:CDS
CTTCAAAGAACCATATACGG+TGG	0.675052	3:-111362459	MsaT017626.1:CDS
AAGGACCTGGAAGCATGGAA+GGG	0.676862	3:+111361130	None:intergenic
TTGGCCTAACAGAATTGTGG+GGG	0.685774	3:-111360330	MsaT017626.1:CDS
GGAGCTTATAAGAAACCTGG+AGG	0.707876	3:-111361288	MsaT017626.1:CDS
ACTGTCATAACGATTGACTG+TGG	0.771835	3:+111362876	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	111360327	111363554	111360327	ID=MsaG017626
Chr3	mRNA	111360327	111363554	111360327	ID=MsaT017626.1;Parent=MsaG017626
Chr3	exon	111360327	111360389	111360327	ID=MsaT017626.1.exon13;Parent=MsaT017626.1
Chr3	CDS	111360327	111360389	111360327	ID=cds.MsaT017626.1;Parent=MsaT017626.1
Chr3	exon	111360493	111360691	111360493	ID=MsaT017626.1.exon12;Parent=MsaT017626.1
Chr3	CDS	111360493	111360691	111360493	ID=cds.MsaT017626.1;Parent=MsaT017626.1
Chr3	exon	111360833	111360909	111360833	ID=MsaT017626.1.exon11;Parent=MsaT017626.1
Chr3	CDS	111360833	111360909	111360833	ID=cds.MsaT017626.1;Parent=MsaT017626.1
Chr3	exon	111360965	111361051	111360965	ID=MsaT017626.1.exon10;Parent=MsaT017626.1
Chr3	CDS	111360965	111361051	111360965	ID=cds.MsaT017626.1;Parent=MsaT017626.1
Chr3	exon	111361136	111361184	111361136	ID=MsaT017626.1.exon9;Parent=MsaT017626.1
Chr3	CDS	111361136	111361184	111361136	ID=cds.MsaT017626.1;Parent=MsaT017626.1
Chr3	exon	111361269	111361319	111361269	ID=MsaT017626.1.exon8;Parent=MsaT017626.1
Chr3	CDS	111361269	111361319	111361269	ID=cds.MsaT017626.1;Parent=MsaT017626.1
Chr3	exon	111361403	111361455	111361403	ID=MsaT017626.1.exon7;Parent=MsaT017626.1
Chr3	CDS	111361403	111361455	111361403	ID=cds.MsaT017626.1;Parent=MsaT017626.1
Chr3	exon	111362307	111362340	111362307	ID=MsaT017626.1.exon6;Parent=MsaT017626.1
Chr3	CDS	111362307	111362340	111362307	ID=cds.MsaT017626.1;Parent=MsaT017626.1
Chr3	exon	111362457	111362545	111362457	ID=MsaT017626.1.exon5;Parent=MsaT017626.1
Chr3	CDS	111362457	111362545	111362457	ID=cds.MsaT017626.1;Parent=MsaT017626.1
Chr3	exon	111362694	111362779	111362694	ID=MsaT017626.1.exon4;Parent=MsaT017626.1
Chr3	CDS	111362694	111362779	111362694	ID=cds.MsaT017626.1;Parent=MsaT017626.1
Chr3	exon	111362869	111362913	111362869	ID=MsaT017626.1.exon3;Parent=MsaT017626.1
Chr3	CDS	111362869	111362913	111362869	ID=cds.MsaT017626.1;Parent=MsaT017626.1
Chr3	exon	111363015	111363204	111363015	ID=MsaT017626.1.exon2;Parent=MsaT017626.1
Chr3	CDS	111363015	111363204	111363015	ID=cds.MsaT017626.1;Parent=MsaT017626.1
Chr3	exon	111363546	111363554	111363546	ID=MsaT017626.1.exon1;Parent=MsaT017626.1
Chr3	CDS	111363546	111363554	111363546	ID=cds.MsaT017626.1;Parent=MsaT017626.1

Gene Sequence

>MsaT017626.1

ATGCCGCTTTTAAGTCAAAGAAATGAAATCAATAATGTCAACTTGCACACTAGTAGTAACGTTGAAGCGTTTCCGAGTCAGAGCAACACTGTTAATCTTCCTCCACTTCTTCAAACTGAACCCAACCAAAGAGGAAAGCATAATGGTAAATCAAAAGTTTCAAAAAATTCAAAATCTGCCAATCAGATTTCAAATACAGACTCTCTGAATTCAGCCACAGTCAATCGTTATGACAGTTCCTTAGGATTGTTAACCAAGAAATTTATCAGTTTGATCAATGAGGCTAAGGATGGTACCCTTGACCTAAATAAAACTGCTGAGATCTTAAAGGTTCAAAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAACCATATACGGTGGAACCACGAACTGGAGCATCAAGTTAAATCTCTAAAGGATGAAGTTGATAGCTTATATGCCGAGGAATACAAACTTGACCAGTGTATAAGTGAAAGAAAGGAGCTTATAAGAAACCTGGAGGAAGGTGAAAACACCGGGAAGTACCTTTTTTTTACCAAAGAAGATATTCTTACCCTTCCATGCTTCCAGAATAAGCAACTTATTACAATCAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCGATCCTGATGAGGTGGGATTCAACTTATATGGATGAATTAGGCTTCCACCAAAGGCAGTACAGAATGATTGTTAGAAGTGCAACTGGACCGATAAATCTGTACCTCTTGAACAAGCACGACCACAAGTTTGAGGGTGTGAGTGCCAAGCAGGCAAAGTTAGAAGATCCATCACGGAGTAGCAACGGCTGCAGAATGGAGGGTGTGGGATTATTAGAAAACCAAGGTTTTCAGAAAAACCCTTCTGGGAGTTTAAGTTCGCTTGACTCAGAGGCTTTTGGAATTCAACAAATTACTCCTACGGATTTGGATGTTGATGGTGATTATTGGTTTCAATCAGATCCCCAAGTTGGCCTAACAGAATTGTGGGGGTAG

Protein sequence

>MsaT017626.1

MPLLSQRNEINNVNLHTSSNVEAFPSQSNTVNLPPLLQTEPNQRGKHNGKSKVSKNSKSANQISNTDSLNSATVNRYDSSLGLLTKKFISLINEAKDGTLDLNKTAEILKVQKRRIYDITNVLEGIGLIEKTSKNHIRWNHELEHQVKSLKDEVDSLYAEEYKLDQCISERKELIRNLEEGENTGKYLFFTKEDILTLPCFQNKQLITIKAPKASFIEVPILMRWDSTYMDELGFHQRQYRMIVRSATGPINLYLLNKHDHKFEGVSAKQAKLEDPSRSSNGCRMEGVGLLENQGFQKNPSGSLSSLDSEAFGIQQITPTDLDVDGDYWFQSDPQVGLTELWG*