AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG017702


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG017702 MtrunA17_Chr3g0143921 93.075 953 22 1 1 953 1 909 0.0 1816
MsaG017702 MtrunA17_Chr1g0203081 39.744 624 297 13 135 745 120 677 1.12e-128 413
MsaG017702 MtrunA17_Chr1g0203081 45.946 74 39 1 862 935 886 958 2.27e-13 74.7
MsaG017702 MtrunA17_Chr6g0472281 38.086 491 258 13 20 496 17 475 1.11e-88 302
MsaG017702 MtrunA17_Chr6g0472281 38.720 328 157 9 629 951 565 853 4.95e-47 181
MsaG017702 MtrunA17_Chr2g0329671 39.410 373 202 9 134 493 167 528 3.96e-79 277
MsaG017702 MtrunA17_Chr2g0329671 64.773 88 31 0 622 709 591 678 8.30e-29 124
MsaG017702 MtrunA17_Chr4g0033791 41.033 368 197 10 138 493 146 505 5.42e-78 273
MsaG017702 MtrunA17_Chr4g0033791 31.143 350 198 7 622 940 567 904 1.30e-37 152
MsaG017702 MtrunA17_Chr5g0448621 45.714 315 158 6 628 939 607 911 7.45e-68 244
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG017702 AT1G20640.1 46.989 930 380 20 21 944 7 829 0.0 726
MsaG017702 AT1G20640.3 46.989 930 380 20 21 944 7 829 0.0 726
MsaG017702 AT1G20640.2 46.989 930 380 20 21 944 7 829 0.0 726
MsaG017702 AT1G76350.2 44.771 918 360 19 25 936 11 787 0.0 702
MsaG017702 AT1G76350.1 44.771 918 360 19 25 936 11 787 0.0 702
MsaG017702 AT1G76350.4 44.771 918 360 19 25 936 11 787 0.0 702
MsaG017702 AT1G76350.3 44.771 918 360 19 25 936 11 787 0.0 702
MsaG017702 AT4G35270.2 42.105 950 495 21 23 943 23 946 0.0 665
MsaG017702 AT4G35270.1 42.105 950 495 21 23 943 23 946 0.0 665
MsaG017702 AT4G35270.3 42.105 950 495 21 23 943 23 946 0.0 665
MsaG017702 AT4G35270.4 42.105 950 495 21 23 943 23 946 0.0 665
MsaG017702 AT2G17150.1 41.595 928 476 17 23 943 27 895 0.0 637
MsaG017702 AT2G17150.6 41.595 928 476 17 23 943 27 895 0.0 637
MsaG017702 AT2G17150.4 41.333 675 352 12 276 943 3 640 5.20e-143 441
MsaG017702 AT2G17150.2 39.470 641 344 12 23 659 27 627 1.21e-133 416
MsaG017702 AT2G17150.5 39.441 644 343 13 23 659 27 630 1.21e-132 414
MsaG017702 AT2G17150.3 39.441 644 343 13 23 659 27 630 1.21e-132 414
MsaG017702 AT1G64530.1 40.536 597 286 11 126 711 92 630 4.64e-129 410
MsaG017702 AT1G64530.1 41.558 77 42 3 862 937 744 818 4.57e-11 67.4
MsaG017702 AT1G64530.2 35.180 776 345 17 196 933 5 660 6.46e-129 405
MsaG017702 AT4G24020.1 38.932 637 301 14 139 753 147 717 7.08e-118 384
MsaG017702 AT4G24020.1 40.000 90 53 1 862 951 866 954 4.04e-14 77.4
MsaG017702 AT2G43500.3 37.177 581 288 12 138 715 162 668 6.30e-116 378
MsaG017702 AT2G43500.9 37.177 581 288 12 138 715 162 668 6.30e-116 378
MsaG017702 AT2G43500.6 37.177 581 288 12 138 715 162 668 6.30e-116 378
MsaG017702 AT2G43500.1 37.177 581 288 12 138 715 162 668 6.30e-116 378
MsaG017702 AT2G43500.10 37.177 581 288 12 138 715 162 668 6.30e-116 378
MsaG017702 AT2G43500.11 37.177 581 288 12 138 715 162 668 6.30e-116 378
MsaG017702 AT2G43500.7 37.177 581 288 12 138 715 162 668 6.30e-116 378
MsaG017702 AT2G43500.8 37.177 581 288 12 138 715 162 668 6.30e-116 378
MsaG017702 AT2G43500.5 36.532 594 287 13 138 715 162 681 7.87e-113 370
MsaG017702 AT2G43500.4 36.532 594 287 13 138 715 162 681 7.87e-113 370
MsaG017702 AT2G43500.2 36.195 594 289 13 138 715 162 681 1.84e-111 366
MsaG017702 AT3G59580.2 36.779 416 235 12 138 538 105 507 4.57e-77 271
MsaG017702 AT3G59580.3 36.779 416 235 12 138 538 105 507 4.57e-77 271
MsaG017702 AT3G59580.1 36.779 416 235 12 138 538 105 507 4.57e-77 271
MsaG017702 AT4G38340.2 40.000 340 185 7 137 473 41 364 3.53e-70 247
MsaG017702 AT4G38340.2 77.381 84 19 0 629 712 419 502 4.39e-34 140
MsaG017702 AT4G38340.2 50.538 93 40 3 851 940 597 686 6.19e-17 86.3
MsaG017702 AT4G38340.1 40.000 340 185 7 137 473 112 435 1.98e-69 246
MsaG017702 AT4G38340.1 77.381 84 19 0 629 712 490 573 7.49e-34 140
MsaG017702 AT4G38340.1 50.538 93 40 3 851 940 668 757 7.24e-17 86.3
MsaG017702 AT4G24020.2 42.449 245 127 4 277 508 1 244 2.66e-48 184
MsaG017702 AT4G24020.2 50.388 129 54 1 635 753 309 437 1.75e-26 116
MsaG017702 AT4G24020.2 40.000 90 53 1 862 951 586 674 2.45e-14 77.8

Find 231 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTCGATATCAAATATT+TGG 0.153465 3:+112287768 MsaT017702.1:CDS
AAGATATGCTTATACAAATA+TGG 0.190554 3:+112283737 MsaT017702.1:CDS
GTTTCCTGGCTTTGTGATCT+TGG 0.257901 3:-112287550 None:intergenic
GACCTTGATTCAAGTGAAAA+AGG 0.270581 3:-112283811 None:intergenic
GACTCGGTTCAAGGTGCCTC+TGG 0.272348 3:+112287163 MsaT017702.1:CDS
GTTTGCCTGGTCGAGTTTAT+AGG 0.274228 3:+112283917 MsaT017702.1:CDS
CTTGATTCAGAGTTGAGATT+AGG 0.293147 3:-112287255 None:intergenic
TCTTCATAACGCCAATTCTT+TGG 0.293995 3:-112287700 None:intergenic
ATTGGATGTTATAACAAATA+AGG 0.294548 3:+112285289 MsaT017702.1:CDS
TCTCATCATGCCAGGTTGTT+TGG 0.296000 3:+112284978 MsaT017702.1:CDS
CTTGCGAGTTATAACAAATA+AGG 0.307272 3:+112285157 MsaT017702.1:CDS
TTGATTTATTATCTTGAATC+AGG 0.308616 3:-112287519 None:intergenic
CCTTATCAGCTTCTCTGTTA+TGG 0.316161 3:-112283680 None:intergenic
GGTGATTTCGATGCACCTTC+AGG 0.318756 3:-112287328 None:intergenic
GGGTAACTTCTTGTCAAGTT+TGG 0.320273 3:+112285547 MsaT017702.1:CDS
AACTTGTGATGCAGATTTAG+AGG 0.322889 3:+112287816 MsaT017702.1:CDS
AGAACTCCTGATAAAATTAC+TGG 0.324430 3:-112287899 None:intergenic
GTGATGGCCGTTGCTGATAT+TGG 0.327958 3:+112285212 MsaT017702.1:CDS
GTGATGGCCGTTGCTGATAT+TGG 0.327958 3:+112285344 MsaT017702.1:CDS
TTGATTCAGAGTTGAGATTA+GGG 0.328089 3:-112287254 None:intergenic
TTCATTCTCTTGGCCTGCCT+TGG 0.333817 3:+112283459 MsaT017702.1:CDS
GGTGTTCACCAAGTGTTTCC+TGG 0.335547 3:-112287564 None:intergenic
AATTCTTTGGCAACCTAAAC+CGG 0.340512 3:-112287687 None:intergenic
GTATTAAGCGTTGGCCTTCT+CGG 0.340723 3:+112287092 MsaT017702.1:CDS
CAAGAAAGTCTTACTTTAAG+AGG 0.342735 3:+112285485 MsaT017702.1:CDS
TCAAAGATTGGATTGGAAAA+AGG 0.346376 3:-112283433 None:intergenic
GTTTGAGTTTAAGACTCATT+TGG 0.347090 3:+112283597 MsaT017702.1:CDS
ACAAGGGAGCAGGACATGTT+TGG 0.349788 3:+112284056 MsaT017702.1:CDS
TTCCTTCTATTCAAAATTCT+CGG 0.352144 3:+112287201 MsaT017702.1:CDS
CTATCGTCTCCAAATTTATC+AGG 0.353197 3:+112287226 MsaT017702.1:CDS
ATGGAGCATCACTTGTTAAT+AGG 0.355386 3:+112284867 MsaT017702.1:CDS
GGTAACTTCTTGTCAAGTTT+GGG 0.360621 3:+112285548 MsaT017702.1:CDS
TTTGAGTTTAAGACTCATTT+GGG 0.363096 3:+112283598 MsaT017702.1:CDS
AAAGATGCTGCAAAGAATAT+TGG 0.364050 3:+112285659 MsaT017702.1:CDS
GAGTTGGTGGCGGGTTTGCC+TGG 0.366616 3:+112283904 MsaT017702.1:CDS
CACCTGATGTTCGATTCTTC+AGG 0.370588 3:+112283959 MsaT017702.1:CDS
AGGGTGGTTCCTGATAAATT+TGG 0.376289 3:-112287235 None:intergenic
GAGACGAGAAAACCCGGTTT+AGG 0.376446 3:+112287674 MsaT017702.1:CDS
TCTTTGACCCTTCATTCTCT+TGG 0.378297 3:+112283449 MsaT017702.1:CDS
GTGAAGGGGTTAGTAGGTTG+TGG 0.382908 3:+112283620 MsaT017702.1:CDS
TTTGCCTGGTCGAGTTTATA+GGG 0.385793 3:+112283918 MsaT017702.1:CDS
CAAGAGGATGGCTGTCTCAT+TGG 0.386966 3:+112285271 MsaT017702.1:CDS
CAAGAGGATGGCTGTCTCAT+TGG 0.386966 3:+112285403 MsaT017702.1:CDS
GTGGGTCTCTTGCATCCAAC+AGG 0.388191 3:+112284734 MsaT017702.1:CDS
TTCCAGCGAAATATTGTCTA+AGG 0.388915 3:-112285631 None:intergenic
TTAATAGGTCAAGGTGTTGC+CGG 0.393576 3:+112284882 MsaT017702.1:CDS
TGTTATAACAAATAAGGAAT+TGG 0.398387 3:+112285295 MsaT017702.1:CDS
CATAGAGTAAAAGTTACATT+TGG 0.399282 3:+112287652 MsaT017702.1:CDS
ACAACACAGCAGAGCAACTA+TGG 0.400513 3:+112284099 MsaT017702.1:CDS
GGTTTAGGTTGCCAAAGAAT+TGG 0.400528 3:+112287689 MsaT017702.1:CDS
GAGTGTTCTCCTTCCGTTGA+GGG 0.401877 3:+112285527 MsaT017702.1:CDS
CCATAACAGAGAAGCTGATA+AGG 0.402380 3:+112283680 MsaT017702.1:CDS
AGTGGATCAAAGATTTCAAT+AGG 0.403479 3:+112283710 MsaT017702.1:CDS
AGTTATAACAAATAAGGAAT+TGG 0.408257 3:+112285163 MsaT017702.1:CDS
CGGCTTTCCTGTTCAGTACA+TGG 0.410252 3:-112283535 None:intergenic
CTCGGGTAGTGCGGTTTCAT+AGG 0.417672 3:-112284655 None:intergenic
GAAATCTTTGATCCACTTGA+GGG 0.419150 3:-112283704 None:intergenic
GTCTGGTAACAAAGATTCAT+TGG 0.422317 3:+112287435 MsaT017702.1:CDS
TGCTCGTTGTTCTCCAAGGC+AGG 0.422575 3:-112283472 None:intergenic
GAGAATGAAGGGTCAAAGAT+TGG 0.423559 3:-112283445 None:intergenic
AGATCATTAGCTCTCAGAAT+TGG 0.423575 3:-112283787 None:intergenic
AACAATGTCTAGAAAGTTCT+CGG 0.424847 3:+112285448 MsaT017702.1:CDS
ATTTGGGTGAAGGGGTTAGT+AGG 0.424980 3:+112283614 MsaT017702.1:CDS
TGGAGCTTCCATCATGGTAT+TGG 0.425349 3:-112283302 None:intergenic
GATATCTCACAGAGATTTCT+CGG 0.426588 3:-112283852 None:intergenic
CAAGGGAGCAGGACATGTTT+GGG 0.427327 3:+112284057 MsaT017702.1:CDS
TGCTCCTCCATGTACTGAAC+AGG 0.433075 3:+112283528 MsaT017702.1:CDS
CTCGTCATTGACTCGGTTCA+AGG 0.434191 3:+112287154 MsaT017702.1:CDS
GGGCTCAACGAATCGGGATC+TGG 0.434923 3:-112287307 None:intergenic
TAATAGGTCAAGGTGTTGCC+GGG 0.435218 3:+112284883 MsaT017702.1:CDS
ACCTTCAGGGCTCAACGAAT+CGG 0.436452 3:-112287314 None:intergenic
TGGTTGGAAGCTTCTGCTGA+TGG 0.437275 3:+112283385 MsaT017702.1:CDS
ACACGGAACATTAGCGGTTC+CGG 0.438801 3:+112284026 MsaT017702.1:CDS
CTCGTGCCGAACATCATTGC+CGG 0.439855 3:-112283497 None:intergenic
GTTGTTGATCTCAGCAGCTC+TGG 0.440941 3:+112284510 MsaT017702.1:CDS
TTGCTATGTTGGTGATTCTT+CGG 0.441455 3:+112284821 MsaT017702.1:CDS
CTATCATCCCCTCTATTAAC+CGG 0.442227 3:-112283763 None:intergenic
ATTGTCCATGATTATTCAAA+GGG 0.447950 3:+112285124 MsaT017702.1:CDS
ATTTGGACGATGATTATGAA+TGG 0.449463 3:+112287785 MsaT017702.1:CDS
CTCAGAACCTCTTGAATCTC+GGG 0.451350 3:-112284672 None:intergenic
GGCTGTATGCTTAATGAGAC+TGG 0.451702 3:-112287286 None:intergenic
AGATATGCTTATACAAATAT+GGG 0.453741 3:+112283738 MsaT017702.1:CDS
CCTTCAGGGCTCAACGAATC+GGG 0.455000 3:-112287313 None:intergenic
GACTCAAAGGAGTTGGTGGC+GGG 0.455558 3:+112283895 MsaT017702.1:CDS
TGCAAACAGTCTCAAGTTCA+CGG 0.457700 3:-112284122 None:intergenic
CAGCATTATTAACTATAATC+CGG 0.460364 3:-112283555 None:intergenic
GGAACATGAATGGCTTGAAT+AGG 0.463008 3:-112287374 None:intergenic
CATTGTCCATGATTATTCAA+AGG 0.467851 3:+112285123 MsaT017702.1:CDS
GATCCACCAGGTCCTGGATT+AGG 0.474573 3:-112283655 None:intergenic
AGCAACCCGGCAATGATGTT+CGG 0.474729 3:+112283491 MsaT017702.1:CDS
TGCATCCAACAGGGAAAAGA+TGG 0.475400 3:+112284744 MsaT017702.1:CDS
TCACTGTCATTGCAATCTAC+AGG 0.475999 3:-112285077 None:intergenic
GAGGAGATGTTGACTGTGGT+AGG 0.478292 3:+112285504 MsaT017702.1:CDS
ACCACAAGATGAAAATTCAA+TGG 0.483142 3:+112283324 MsaT017702.1:CDS
GAGACCCACGTCTGAGCTAA+AGG 0.485407 3:-112284720 None:intergenic
ATGTTGGTGATTCTTCGGTC+AGG 0.486077 3:+112284826 MsaT017702.1:CDS
GTGTTGTTGCTCTGACAAGC+TGG 0.486344 3:-112287395 None:intergenic
ATATGGGTGCCGGTTAATAG+AGG 0.486599 3:+112283754 MsaT017702.1:CDS
CGGTTAATAGAGGGGATGAT+AGG 0.488453 3:+112283764 MsaT017702.1:CDS
CATAACAGAGAAGCTGATAA+GGG 0.488496 3:+112283681 MsaT017702.1:CDS
CTCCTGAAGAATCGAACATC+AGG 0.489431 3:-112283961 None:intergenic
AGGAGAGAAAAGACGGGCCA+AGG 0.490415 3:+112285583 MsaT017702.1:CDS
GTCCTTAGACAATATTTCGC+TGG 0.494295 3:+112285629 MsaT017702.1:CDS
TCTTAAACTCAAACTGCTGC+AGG 0.496219 3:-112283588 None:intergenic
TTTGGACGATGATTATGAAT+GGG 0.496780 3:+112287786 MsaT017702.1:CDS
GTGATTTCGATGCACCTTCA+GGG 0.498166 3:-112287327 None:intergenic
GGTAACAAAGATTCATTGGT+TGG 0.498700 3:+112287439 MsaT017702.1:CDS
GCACACCCTTTGAATAATCA+TGG 0.498968 3:-112285129 None:intergenic
ATGGAAGATCCACCAGGTCC+TGG 0.499029 3:-112283661 None:intergenic
TGAAGGGTCAAAGATTGGAT+TGG 0.499145 3:-112283440 None:intergenic
CACACAAACAATGTTGCGTC+TGG 0.501686 3:+112287418 MsaT017702.1:CDS
TCTCAGAACCTCTTGAATCT+CGG 0.503095 3:-112284673 None:intergenic
GGACTCAAAGGAGTTGGTGG+CGG 0.508229 3:+112283894 MsaT017702.1:CDS
CAACTCTGAAAAGGATCTGC+AGG 0.508919 3:+112287062 MsaT017702.1:CDS
CCCGATTCGTTGAGCCCTGA+AGG 0.511003 3:+112287313 MsaT017702.1:CDS
AGGAGATGTTGACTGTGGTA+GGG 0.511843 3:+112285505 MsaT017702.1:CDS
AGTTTGGGAGTAAATAGAAC+AGG 0.512927 3:+112285563 MsaT017702.1:CDS
CTGACAAGCTGGAACATGAA+TGG 0.515320 3:-112287384 None:intergenic
TCTGTACTACAACTCTGAAA+AGG 0.515505 3:+112287053 MsaT017702.1:CDS
CACTCGCAAAGCGTCTCAAA+AGG 0.517406 3:+112287621 MsaT017702.1:CDS
GGGTTGCTCGTTGTTCTCCA+AGG 0.518849 3:-112283476 None:intergenic
GGGTTGCAGACAAAGTTTGA+TGG 0.518963 3:-112287875 None:intergenic
CGGATTATAGTTAATAATGC+TGG 0.519737 3:+112283556 MsaT017702.1:CDS
TTAAGACTCATTTGGGTGAA+GGG 0.525792 3:+112283605 MsaT017702.1:CDS
AGATTTCTCGGTACTTTGCA+AGG 0.526853 3:-112283840 None:intergenic
ATCCACTGTCTCATCATGCC+AGG 0.527462 3:+112284970 MsaT017702.1:CDS
TTTAAGACTCATTTGGGTGA+AGG 0.528588 3:+112283604 MsaT017702.1:CDS
CGGTGTTTGAACAAGGGAGC+AGG 0.529135 3:+112284046 MsaT017702.1:CDS
TGAAATCTTTGATCCACTTG+AGG 0.531373 3:-112283705 None:intergenic
GCGGTTCCGGTGTTTGAACA+AGG 0.534054 3:+112284039 MsaT017702.1:CDS
GTGGAGTATGCTTGCTATGT+TGG 0.534634 3:+112284810 MsaT017702.1:CDS
GGTCCTGGATTAGGCGTTGG+TGG 0.534809 3:-112283646 None:intergenic
AAGGCAGGCCAAGAGAATGA+AGG 0.539487 3:-112283457 None:intergenic
GCGTTATGAAGATCTTGTGC+AGG 0.540519 3:+112287711 MsaT017702.1:CDS
GCTTATACAAATATGGGTGC+CGG 0.542004 3:+112283744 MsaT017702.1:CDS
AACAGGGAAAAGATGGCTGC+CGG 0.543888 3:+112284751 MsaT017702.1:CDS
AGCTGATAAGGGCCCTCAAG+TGG 0.545368 3:+112283692 MsaT017702.1:CDS
ACTCGGTTCAAGGTGCCTCT+GGG 0.547073 3:+112287164 MsaT017702.1:CDS
TGTAATTATCATCAGAGTGC+CGG 0.547779 3:-112284770 None:intergenic
TAATAAGGACTTGCGATACT+CGG 0.548860 3:-112287593 None:intergenic
CATGCCAAGATCACAAAGCC+AGG 0.549068 3:+112287546 MsaT017702.1:CDS
CCAGGTCCTGGATTAGGCGT+TGG 0.550312 3:-112283649 None:intergenic
TGCTACAGATGTAATTCAGT+CGG 0.550485 3:+112285238 MsaT017702.1:CDS
TGCTACAGATGTAATTCAGT+CGG 0.550485 3:+112285370 MsaT017702.1:CDS
GGAGGACTCAAAGGAGTTGG+TGG 0.551490 3:+112283891 MsaT017702.1:CDS
ATTCTTTGGCAACCTAAACC+GGG 0.553102 3:-112287686 None:intergenic
TTTGTTAGATGGTTGTTGGT+TGG 0.554167 3:+112283369 MsaT017702.1:CDS
CTGAGATACTATAGATACTT+CGG 0.554550 3:-112285028 None:intergenic
CTTATCATCTAATGAAGTGA+TGG 0.555317 3:+112285196 MsaT017702.1:CDS
CTTATCATCTAATGAAGTGA+TGG 0.555317 3:+112285328 MsaT017702.1:CDS
CTCTTGAATCTCGGGTAGTG+CGG 0.556527 3:-112284664 None:intergenic
TGCAGAGGTGGAGGACTCAA+AGG 0.557266 3:+112283882 MsaT017702.1:CDS
ATTCCACCAACGCCTAATCC+AGG 0.557897 3:+112283643 MsaT017702.1:CDS
CATTTGGAGACGAGAAAACC+CGG 0.558546 3:+112287668 MsaT017702.1:CDS
TAAGACTCATTTGGGTGAAG+GGG 0.560800 3:+112283606 MsaT017702.1:CDS
GTTTGTCATAAAAGCACCCC+CGG 0.561641 3:-112284901 None:intergenic
GGTGGAGGACTCAAAGGAGT+TGG 0.562364 3:+112283888 MsaT017702.1:CDS
TTACACACACTGTATATCTC+CGG 0.564968 3:+112284788 MsaT017702.1:CDS
TCGTGCCGAACATCATTGCC+GGG 0.569558 3:-112283496 None:intergenic
CTTGCTTAAAGAAGTAATGT+CGG 0.569630 3:-112284940 None:intergenic
ATCTTGTGCAGGAAATTGCT+AGG 0.569881 3:+112287722 MsaT017702.1:CDS
GATGCTGCAAAGAATATTGG+CGG 0.571710 3:+112285662 MsaT017702.1:CDS
GACTGTTTGCAAAGCGCTAG+AGG 0.574356 3:+112284134 MsaT017702.1:CDS
TTGTGGTGGAGCTTCCATCA+TGG 0.576729 3:-112283308 None:intergenic
AGACAGCCATCCTCTTGTGT+TGG 0.577568 3:-112285265 None:intergenic
AGACAGCCATCCTCTTGTGT+TGG 0.577568 3:-112285397 None:intergenic
ATCTGCAACCAATACCATGA+TGG 0.578563 3:+112283294 MsaT017702.1:CDS
GGCAACACGGTATTAAGCGT+TGG 0.579088 3:+112287083 MsaT017702.1:CDS
AGCATACCCATCATGGGAGA+TGG 0.583903 3:+112283256 None:intergenic
ATAGAACAGGAGAGAAAAGA+CGG 0.585692 3:+112285576 MsaT017702.1:CDS
CATGTACTGAACAGGAAAGC+CGG 0.586722 3:+112283536 MsaT017702.1:CDS
CATCACTTGTTAATAGGTCA+AGG 0.586973 3:+112284873 MsaT017702.1:CDS
TGTCGGTTGAGAAGCACGGT+TGG 0.589014 3:-112284923 None:intergenic
CGGTTCCGGTGTTTGAACAA+GGG 0.589544 3:+112284040 MsaT017702.1:CDS
CGAACATCAGGTGTCCACTC+AGG 0.589765 3:-112283949 None:intergenic
TATGGGTGCCGGTTAATAGA+GGG 0.590546 3:+112283755 MsaT017702.1:CDS
TCACAAAGCCAGGAAACACT+TGG 0.593082 3:+112287556 MsaT017702.1:CDS
AGGATGGCTGTCTCATTGGA+TGG 0.593239 3:+112285407 MsaT017702.1:CDS
ACTCCTGATAAAATTACTGG+AGG 0.593662 3:-112287896 None:intergenic
AGGCAGGCCAAGAGAATGAA+GGG 0.595697 3:-112283456 None:intergenic
TTGTTATAACTCGCAAGCTG+CGG 0.597685 3:-112285151 None:intergenic
AGCTCGCAATCCAAACAACC+TGG 0.599497 3:-112284988 None:intergenic
ACTTCAACTCGTCATTGACT+CGG 0.601900 3:+112287147 MsaT017702.1:CDS
GGAACTCTGACTACATGAAG+AGG 0.603307 3:-112287353 None:intergenic
AATAGGTCAAGGTGTTGCCG+GGG 0.604344 3:+112284884 MsaT017702.1:CDS
CTCCTGATAAAATTACTGGA+GGG 0.605907 3:-112287895 None:intergenic
CTAGAAAGTTCTCGGAACAA+AGG 0.606403 3:+112285456 MsaT017702.1:CDS
CAGACGCAACATTGTTTGTG+TGG 0.607061 3:-112287417 None:intergenic
TTATCCCTATAAACTCGACC+AGG 0.609566 3:-112283922 None:intergenic
GGAGTGTTCTCCTTCCGTTG+AGG 0.611994 3:+112285526 MsaT017702.1:CDS
AGCAAATCCAATATCAGCAA+CGG 0.612275 3:-112285219 None:intergenic
AGCAAATCCAATATCAGCAA+CGG 0.612275 3:-112285351 None:intergenic
CCAACGCCTAATCCAGGACC+TGG 0.614235 3:+112283649 MsaT017702.1:CDS
CTGCTCCCTTGTTCAAACAC+CGG 0.615580 3:-112284045 None:intergenic
TGATGTACACGGAACATTAG+CGG 0.615722 3:+112284020 MsaT017702.1:CDS
TCTGTTATGGAAGATCCACC+AGG 0.616650 3:-112283667 None:intergenic
ATAGATACTTCGGAGTCGAA+TGG 0.619918 3:-112285018 None:intergenic
AATTGCCTTTAGCTCAGACG+TGG 0.620316 3:+112284715 MsaT017702.1:CDS
TGACAAGAAGTTACCCTCAA+CGG 0.620322 3:-112285540 None:intergenic
TCGCAAAGCGTCTCAAAAGG+AGG 0.621421 3:+112287624 MsaT017702.1:CDS
TTGGAGAACAACGAGCAACC+CGG 0.622537 3:+112283478 MsaT017702.1:CDS
AGTCGGAACTCCAACACAAG+AGG 0.629939 3:+112285255 MsaT017702.1:CDS
AGTCGGAACTCCAACACAAG+AGG 0.629939 3:+112285387 MsaT017702.1:CDS
GACGAGTTGAAGTTTCTGCA+AGG 0.629978 3:-112287137 None:intergenic
ATTCAGAGTTGAGATTAGGG+TGG 0.634639 3:-112287251 None:intergenic
ACATAGCAAGCATACTCCAC+CGG 0.635320 3:-112284807 None:intergenic
GTACATCACACTCTTGAGCA+TGG 0.639396 3:-112284005 None:intergenic
GCTCAAGAGTGTGATGTACA+CGG 0.639508 3:+112284009 MsaT017702.1:CDS
TCTTGAGCATGGTCAACTCG+TGG 0.640513 3:-112283994 None:intergenic
CGCACTACCCGAGATTCAAG+AGG 0.642440 3:+112284665 MsaT017702.1:CDS
AAGAAGTTACCCTCAACGGA+AGG 0.646367 3:-112285536 None:intergenic
CTCTGACTACATGAAGAGGA+AGG 0.648478 3:-112287349 None:intergenic
TAGAACAGGAGAGAAAAGAC+GGG 0.649215 3:+112285577 MsaT017702.1:CDS
GGAACTCCAACACAAGAGGA+TGG 0.651641 3:+112285259 MsaT017702.1:CDS
GGAACTCCAACACAAGAGGA+TGG 0.651641 3:+112285391 MsaT017702.1:CDS
AAAAGGATCTGCAGGCAACA+CGG 0.653871 3:+112287070 MsaT017702.1:CDS
CTTTCCTGTTCAGTACATGG+AGG 0.656242 3:-112283532 None:intergenic
GAAAGTTCTCGGAACAAAGG+CGG 0.656927 3:+112285459 MsaT017702.1:CDS
CACACACTGTATATCTCCGG+TGG 0.659877 3:+112284791 MsaT017702.1:CDS
ATTGCCTTTAGCTCAGACGT+GGG 0.661550 3:+112284716 MsaT017702.1:CDS
ATAGGTCAAGGTGTTGCCGG+GGG 0.662191 3:+112284885 MsaT017702.1:CDS
TTCAAGTCTTCAGAATGTGA+AGG 0.663202 3:+112284536 MsaT017702.1:CDS
ATGTTTGGGAGTTATTGAAG+TGG 0.676259 3:+112284071 MsaT017702.1:CDS
TTAAGAGGAGATGTTGACTG+TGG 0.679381 3:+112285500 MsaT017702.1:CDS
ATGGGTGCCGGTTAATAGAG+GGG 0.680121 3:+112283756 MsaT017702.1:CDS
TGGGTCTCTTGCATCCAACA+GGG 0.683646 3:+112284735 MsaT017702.1:CDS
ACGCCTAATCCAGGACCTGG+TGG 0.693296 3:+112283652 MsaT017702.1:CDS
GTAATGTCGGTTGAGAAGCA+CGG 0.695561 3:-112284927 None:intergenic
ATCAATTTGAAATGACCCAG+AGG 0.697023 3:-112287179 None:intergenic
AACCTGGCATGATGAGACAG+TGG 0.699432 3:-112284972 None:intergenic
ATAGGGATAAGATTCCTGAG+TGG 0.764696 3:+112283935 MsaT017702.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 112283268 112287936 112283268 ID=MsaG017702
Chr3 mRNA 112283268 112287936 112283268 ID=MsaT017702.1;Parent=MsaG017702
Chr3 exon 112283268 112284155 112283268 ID=MsaT017702.1.exon1;Parent=MsaT017702.1
Chr3 CDS 112283268 112284155 112283268 ID=cds.MsaT017702.1;Parent=MsaT017702.1
Chr3 exon 112284510 112284557 112284510 ID=MsaT017702.1.exon2;Parent=MsaT017702.1
Chr3 CDS 112284510 112284557 112284510 ID=cds.MsaT017702.1;Parent=MsaT017702.1
Chr3 exon 112284642 112285683 112284642 ID=MsaT017702.1.exon3;Parent=MsaT017702.1
Chr3 CDS 112284642 112285683 112284642 ID=cds.MsaT017702.1;Parent=MsaT017702.1
Chr3 exon 112287053 112287936 112287053 ID=MsaT017702.1.exon4;Parent=MsaT017702.1
Chr3 CDS 112287053 112287936 112287053 ID=cds.MsaT017702.1;Parent=MsaT017702.1
Gene Sequence

>MsaT017702.1

ATGGGAGATGGTGCTGCAGTGACATCATCTGCAACCAATACCATGATGGAAGCTCCACCACAAGATGAAAATTCAATGGATTTTGATTACATGAGTGAACTTTTGTTAGATGGTTGTTGGTTGGAAGCTTCTGCTGATGGATCTGAGTTCTTGCTGCAAAGTTCTCCTTTTTCCAATCCAATCTTTGACCCTTCATTCTCTTGGCCTGCCTTGGAGAACAACGAGCAACCCGGCAATGATGTTCGGCACGAGTCTCAAGATGCTCCTCCATGTACTGAACAGGAAAGCCGGATTATAGTTAATAATGCTGGTAGTAGCGACCTGCAGCAGTTTGAGTTTAAGACTCATTTGGGTGAAGGGGTTAGTAGGTTGTGGATTCCACCAACGCCTAATCCAGGACCTGGTGGATCTTCCATAACAGAGAAGCTGATAAGGGCCCTCAAGTGGATCAAAGATTTCAATAGGAACAAAGATATGCTTATACAAATATGGGTGCCGGTTAATAGAGGGGATGATAGGCCAATTCTGAGAGCTAATGATCTTCCTTTTTCACTTGAATCAAGGTCTTTAAACCTTGCAAAGTACCGAGAAATCTCTGTGAGATATCAGTTTTCTGCAGAGGTGGAGGACTCAAAGGAGTTGGTGGCGGGTTTGCCTGGTCGAGTTTATAGGGATAAGATTCCTGAGTGGACACCTGATGTTCGATTCTTCAGGAGTGATGAGTATCCACGAGTTGACCATGCTCAAGAGTGTGATGTACACGGAACATTAGCGGTTCCGGTGTTTGAACAAGGGAGCAGGACATGTTTGGGAGTTATTGAAGTGGTGATGACAACACAGCAGAGCAACTATGGCCGTGAACTTGAGACTGTTTGCAAAGCGCTAGAGGTTGTTGATCTCAGCAGCTCTGGACATTCAAGTCTTCAGAATGTGAAGGCTTGCGACAAGTCCTATGAAACCGCACTACCCGAGATTCAAGAGGTTCTGAGATCTGCATGTGAAATGCACAAATTGCCTTTAGCTCAGACGTGGGTCTCTTGCATCCAACAGGGAAAAGATGGCTGCCGGCACTCTGATGATAATTACACACACTGTATATCTCCGGTGGAGTATGCTTGCTATGTTGGTGATTCTTCGGTCAGGTTTTTTCATGAGGCTTGCATGGAGCATCACTTGTTAATAGGTCAAGGTGTTGCCGGGGGTGCTTTTATGACAAACCAACCGTGCTTCTCAACCGACATTACTTCTTTAAGCAAGACAGACTATCCACTGTCTCATCATGCCAGGTTGTTTGGATTGCGAGCTGCAGTTGCCATTCGACTCCGAAGTATCTATAGTATCTCAGACGACTATGTTCTTGAGTTTTTCTTGCCTGTAGATTGCAATGACAGTGAAGAACAGAAAAAGATGCTCACATCATTGTCCATGATTATTCAAAGGGTGTGCCGCAGCTTGCGAGTTATAACAAATAAGGAATTGGAGAAAAATAACTTATCATCTAATGAAGTGATGGCCGTTGCTGATATTGGATTTGCTACAGATGTAATTCAGTCGGAACTCCAACACAAGAGGATGGCTGTCTCATTGGATGTTATAACAAATAAGGAATTGGAGAAAAATAACTTATCATCTAATGAAGTGATGGCCGTTGCTGATATTGGATTTGCTACAGATGTAATTCAGTCGGAACTCCAACACAAGAGGATGGCTGTCTCATTGGATGGCGAAGAAAAGTTTAATGAAACAATGTCTAGAAAGTTCTCGGAACAAAGGCGGCAACAAGAAAGTCTTACTTTAAGAGGAGATGTTGACTGTGGTAGGGAGTGTTCTCCTTCCGTTGAGGGTAACTTCTTGTCAAGTTTGGGAGTAAATAGAACAGGAGAGAAAAGACGGGCCAAGGCAGAGAAAACTATCACTCTTCAAGTCCTTAGACAATATTTCGCTGGAAGTCTAAAAGATGCTGCAAAGAATATTGGCGTCTGTACTACAACTCTGAAAAGGATCTGCAGGCAACACGGTATTAAGCGTTGGCCTTCTCGGAAGATAAAAAAGGTTGGTCACTCCTTGCAGAAACTTCAACTCGTCATTGACTCGGTTCAAGGTGCCTCTGGGTCATTTCAAATTGATTCCTTCTATTCAAAATTCTCGGATCTATCGTCTCCAAATTTATCAGGAACCACCCTAATCTCAACTCTGAATCAAGTTGATAATCCAGTCTCATTAAGCATACAGCCAGATCCCGATTCGTTGAGCCCTGAAGGTGCATCGAAATCACCTTCCTCTTCATGTAGTCAGAGTTCCTATTCAAGCCATTCATGTTCCAGCTTGTCAGAGCAACAACACCACACAAACAATGTTGCGTCTGGTAACAAAGATTCATTGGTTGGTGAAGATTCTGTCGATGTTGTGTTGAAGAGAATCAGAAGTGAAGCAGAACTTAAAAGCCTGATTCAAGATAATAAATCAAAACTCATGCCAAGATCACAAAGCCAGGAAACACTTGGTGAACACCCGAAAACCGAGTATCGCAAGTCCTTATTAAAAAACACTCGCAAAGCGTCTCAAAAGGAGGATGCTCATAGAGTAAAAGTTACATTTGGAGACGAGAAAACCCGGTTTAGGTTGCCAAAGAATTGGCGTTATGAAGATCTTGTGCAGGAAATTGCTAGGAGATTTAATGTAAGTGAAATGAGCAAATTCGATATCAAATATTTGGACGATGATTATGAATGGGTATTACTAACTTGTGATGCAGATTTAGAGGAGTGCATTGATGTTTCTCAATCTTCTGAGAATAGTACCATCAAACTTTGTCTGCAACCCTCCAGTAATTTTATCAGGAGTTCTTTAGAATTTAGATAG

Protein sequence

>MsaT017702.1

MGDGAAVTSSATNTMMEAPPQDENSMDFDYMSELLLDGCWLEASADGSEFLLQSSPFSNPIFDPSFSWPALENNEQPGNDVRHESQDAPPCTEQESRIIVNNAGSSDLQQFEFKTHLGEGVSRLWIPPTPNPGPGGSSITEKLIRALKWIKDFNRNKDMLIQIWVPVNRGDDRPILRANDLPFSLESRSLNLAKYREISVRYQFSAEVEDSKELVAGLPGRVYRDKIPEWTPDVRFFRSDEYPRVDHAQECDVHGTLAVPVFEQGSRTCLGVIEVVMTTQQSNYGRELETVCKALEVVDLSSSGHSSLQNVKACDKSYETALPEIQEVLRSACEMHKLPLAQTWVSCIQQGKDGCRHSDDNYTHCISPVEYACYVGDSSVRFFHEACMEHHLLIGQGVAGGAFMTNQPCFSTDITSLSKTDYPLSHHARLFGLRAAVAIRLRSIYSISDDYVLEFFLPVDCNDSEEQKKMLTSLSMIIQRVCRSLRVITNKELEKNNLSSNEVMAVADIGFATDVIQSELQHKRMAVSLDVITNKELEKNNLSSNEVMAVADIGFATDVIQSELQHKRMAVSLDGEEKFNETMSRKFSEQRRQQESLTLRGDVDCGRECSPSVEGNFLSSLGVNRTGEKRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGSFQIDSFYSKFSDLSSPNLSGTTLISTLNQVDNPVSLSIQPDPDSLSPEGASKSPSSSCSQSSYSSHSCSSLSEQQHHTNNVASGNKDSLVGEDSVDVVLKRIRSEAELKSLIQDNKSKLMPRSQSQETLGEHPKTEYRKSLLKNTRKASQKEDAHRVKVTFGDEKTRFRLPKNWRYEDLVQEIARRFNVSEMSKFDIKYLDDDYEWVLLTCDADLEECIDVSQSSENSTIKLCLQPSSNFIRSSLEFR*