AlfalfaGEDB | MsaG017707

M. sativa ssp. caerulea / MsaG017707

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031967 GO:0031975 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017707	XP_013462288.1	98.928	373	4	0	1	373	1	373	0.0	764

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017707	sp\|Q9LDZ5\|PBL21_ARATH	68.802	359	99	4	3	350	4	360	1.04e-180	509

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017707	tr\|A0A072V4Q6\|A0A072V4Q6_MEDTR	98.928	373	4	0	1	373	1	373	0.0	764

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017707	MtrunA17_Chr3g0143961	98.928	373	4	0	1	373	1	373	0.0	764
MsaG017707	MtrunA17_Chr1g0153851	68.481	349	90	3	1	348	1	330	8.04e-171	479
MsaG017707	MtrunA17_Chr2g0286281	70.886	316	90	2	52	366	73	387	3.62e-162	464
MsaG017707	MtrunA17_Chr1g0213991	70.667	300	87	1	52	350	81	380	8.34e-161	459
MsaG017707	MtrunA17_Chr7g0263521	63.663	344	121	3	11	350	13	356	6.18e-160	453
MsaG017707	MtrunA17_Chr1g0181821	67.081	322	105	1	52	372	58	379	5.32e-158	449
MsaG017707	MtrunA17_Chr7g0237401	58.511	376	130	4	1	350	1	376	1.29e-154	442
MsaG017707	MtrunA17_Chr5g0443691	58.000	350	141	3	1	345	30	378	2.39e-150	430
MsaG017707	MtrunA17_Chr2g0327471	56.878	378	135	4	5	355	2	378	1.12e-149	429
MsaG017707	MtrunA17_Chr2g0327511	56.215	354	150	4	5	355	44	395	4.08e-141	406

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017707	AT1G20650.1	68.802	359	99	4	3	350	4	360	0.0	509
MsaG017707	AT1G76370.1	64.067	359	118	4	1	350	1	357	7.42e-165	466
MsaG017707	AT5G18610.1	74.161	298	76	1	52	348	67	364	2.77e-164	470
MsaG017707	AT5G18610.2	74.161	298	76	1	52	348	67	364	2.77e-164	470
MsaG017707	AT5G18610.3	74.161	298	76	1	52	348	67	364	2.77e-164	470
MsaG017707	AT5G02800.1	69.304	316	96	1	53	367	58	373	4.04e-162	459
MsaG017707	AT5G13160.1	61.853	367	121	3	1	348	1	367	1.47e-161	461
MsaG017707	AT3G07070.1	58.659	358	136	3	1	346	1	358	1.12e-150	432
MsaG017707	AT3G20530.1	65.347	303	103	2	45	345	59	361	1.55e-150	430
MsaG017707	AT1G07870.1	65.909	308	104	1	40	346	75	382	3.56e-149	428

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Find 86 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGCAAACATCTTAT+TGG	0.176576	3:-112373800	MsaT017707.1:CDS
AACCTCTAAGCTGGAGTTCT+CGG	0.397959	3:-112373903	MsaT017707.1:CDS
AAGACAAAGAACCTCTAAGC+TGG	0.535324	3:-112373912	MsaT017707.1:CDS
AAGGGGAAGAGTGTAAGGAC+TGG	0.622099	3:-112375259	MsaT017707.1:CDS
AAGTCTCGATATATGACAGG+CGG	0.636752	3:+112373823	None:intergenic
AAGTCTGATATCTACAGCTT+TGG	0.489170	3:-112373634	MsaT017707.1:CDS
AATGGAGGAACAAACGCAAC+AGG	0.485090	3:-112375433	MsaT017707.1:intron
ACACCATGTCTATGGACTTC+AGG	0.406493	3:+112372789	None:intergenic
ACATGGGTGTTGTCTCCCAC+AGG	0.564323	3:+112373727	None:intergenic
ACGACAATATCACCAATGAG+TGG	0.678045	3:+112372849	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	112372743	112375618	112372743	ID=MsaG017707
Chr3	mRNA	112372743	112375618	112372743	ID=MsaT017707.1;Parent=MsaG017707
Chr3	exon	112372743	112373009	112372743	ID=MsaT017707.1.exon6;Parent=MsaT017707.1
Chr3	CDS	112372743	112373009	112372743	ID=cds.MsaT017707.1;Parent=MsaT017707.1
Chr3	exon	112373552	112373943	112373552	ID=MsaT017707.1.exon5;Parent=MsaT017707.1
Chr3	CDS	112373552	112373943	112373552	ID=cds.MsaT017707.1;Parent=MsaT017707.1
Chr3	exon	112374851	112375040	112374851	ID=MsaT017707.1.exon4;Parent=MsaT017707.1
Chr3	CDS	112374851	112375040	112374851	ID=cds.MsaT017707.1;Parent=MsaT017707.1
Chr3	exon	112375126	112375286	112375126	ID=MsaT017707.1.exon3;Parent=MsaT017707.1
Chr3	CDS	112375126	112375286	112375126	ID=cds.MsaT017707.1;Parent=MsaT017707.1
Chr3	exon	112375434	112375457	112375434	ID=MsaT017707.1.exon2;Parent=MsaT017707.1
Chr3	CDS	112375434	112375457	112375434	ID=cds.MsaT017707.1;Parent=MsaT017707.1
Chr3	exon	112375531	112375618	112375531	ID=MsaT017707.1.exon1;Parent=MsaT017707.1
Chr3	CDS	112375531	112375618	112375531	ID=cds.MsaT017707.1;Parent=MsaT017707.1

Gene Sequence

>MsaT017707.1

ATGAGTTGTTATTCTTGCTTTGTTTCTCGGAAAAAAGATGTTAGCAGAATTGAAGTTGATAATAGTTCTCGATCTGCTCATACTTCAGGGAATGGAGGAACAAACGCAACAGAGGGAAAGGGGAAGAGTGTAAGGACTGGTAAAAGCAGTACTGCAGCAGCTAGTTTTGGTTTTCGAGAGCTTGCGACCGCGACAAGGGGTTTTAAGGAAGCTAATTTGATTGGAGAAGGAGGTTTTGGAAAAGTATTTAAGGGTCGTCTTTCAACCGGCGAGCTTGTTGCTGTGAAACAATTAAGTCATGATGGTCGTCAAGGTTTTCAGGAATTTGTGACTGAGGTTCTTATGTTAAGCTTGCTACATCATTCTAATCTGGTTAAGTTAATTGGCTATTGCACTGATGGAGATCAAAGGCTTTTGGTTTATGAGTATATGCCTATGGGATCTCTCGAAGATCATCTTTTTGATCTTCCCCAAGACAAAGAACCTCTAAGCTGGAGTTCTCGGATGAAGATTGCTGTTGGAGCAGCTCGTGGCCTTGAGTATCTCCACTGTAAAGCAGATCCGCCTGTCATATATCGAGACTTAAAATCTGCAAACATCTTATTGGACAGCGACTTCAGCCCAAAACTGTCAGATTTTGGGCTTGCTAAGCTAGGACCTGTGGGAGACAACACCCATGTTTCAACGAGAGTGATGGGTACATATGGCTATTGCGCGCCAGAATATGCGATGAGTGGCAAATTAACTCTTAAGTCTGATATCTACAGCTTTGGTGTGGTTTTGTTGGAGTTGATTACTGGACGAAGGGCAATAGATGCTAGTAAAAAACCAGGAGAGCAAAACTTAGTTTCATGGTCTCGCCCATATTTTAGTGACCGGAGAAAGTTTGTACATATGGCTGACCCTCTTTTGCAAGGAAACTTCCCCGTCCGCTGTTTGCATCAAGCAATTGCTATAACTGCTATGTGTCTCCAAGAGCAACCAAAATTCCGTCCACTCATTGGTGATATTGTCGTAGCACTGGAATACCTAGCTTCCCAGAGTCAGAATATCCCTGAAGTCCATAGACATGGTGTGCGTAGCCCACCGCAGCAACCACCTTCGAAAATGGACGGAAATTAA

Protein sequence

>MsaT017707.1

MSCYSCFVSRKKDVSRIEVDNSSRSAHTSGNGGTNATEGKGKSVRTGKSSTAAASFGFRELATATRGFKEANLIGEGGFGKVFKGRLSTGELVAVKQLSHDGRQGFQEFVTEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLPQDKEPLSWSSRMKIAVGAARGLEYLHCKADPPVIYRDLKSANILLDSDFSPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDASKKPGEQNLVSWSRPYFSDRRKFVHMADPLLQGNFPVRCLHQAIAITAMCLQEQPKFRPLIGDIVVALEYLASQSQNIPEVHRHGVRSPPQQPPSKMDGN*