AlfalfaGEDB | MsaG017710

M. sativa ssp. caerulea / MsaG017710

KEGG: K10802 K11296
GO: GO:0000785 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00505.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017710	XP_013462296.1	98.710	155	2	0	1	155	1	155	8.11e-99	291

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017710	sp\|P26585\|HMGL_SOYBN	79.508	122	22	2	1	121	1	120	6.74e-57	177

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017710	tr\|I3S988\|I3S988_MEDTR	98.710	155	2	0	1	155	1	155	3.87e-99	291

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TFs/TRs:

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Gene ID	Type	Classification
MsaG017710	TR	HMG

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG017710	0.892343	3.846850e-74	1.283314e-70
MsaG000234	MsaG017710	0.814007	3.309561e-51	6.239932e-49
MsaG000364	MsaG017710	0.836053	2.141818e-56	7.404227e-54
MsaG000377	MsaG017710	0.807423	8.651758e-50	1.388587e-47
MsaG000379	MsaG017710	0.851933	1.229873e-60	7.128108e-58
MsaG000479	MsaG017710	0.821565	6.635798e-53	1.521163e-50
MsaG000520	MsaG017710	0.848388	1.198094e-59	6.146380e-57
MsaG000801	MsaG017710	0.805626	2.062730e-49	3.173072e-47
MsaG000842	MsaG017710	0.800350	2.511623e-48	3.422792e-46
MsaG001223	MsaG017710	0.808059	6.347446e-50	1.034428e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017710	MtrunA17_Chr3g0143991	98.710	155	2	0	1	155	1	155	7.46e-103	291
MsaG017710	MtrunA17_Chr5g0407011	57.895	133	48	4	5	137	3	127	1.42e-37	125
MsaG017710	MtrunA17_Chr8g0370431	60.150	133	44	5	5	137	3	126	1.77e-37	125
MsaG017710	MtrunA17_Chr7g0242251	70.297	101	28	1	41	141	47	145	5.84e-36	122
MsaG017710	MtrunA17_Chr1g0212341	60.000	80	32	0	41	120	98	177	5.53e-27	100
MsaG017710	MtrunA17_Chr4g0052011	47.674	86	45	0	35	120	54	139	4.26e-23	89.0
MsaG017710	MtrunA17_Chr1g0155251	46.667	75	39	1	41	115	554	627	1.11e-12	64.7
MsaG017710	MtrunA17_Chr8g0387931	35.714	98	60	1	41	138	262	356	2.94e-11	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017710	AT1G20693.2	66.013	153	41	4	1	153	1	142	1.03e-53	167
MsaG017710	AT1G20693.3	65.693	137	38	3	1	137	1	128	1.52e-47	151
MsaG017710	AT1G20693.1	65.693	137	38	3	1	137	1	128	1.57e-47	151
MsaG017710	AT1G20696.1	63.504	137	38	3	1	137	1	125	8.50e-46	146
MsaG017710	AT2G17560.3	54.483	145	54	4	1	144	1	134	2.12e-41	135
MsaG017710	AT2G17560.2	52.258	155	56	4	1	155	1	137	5.14e-41	134
MsaG017710	AT2G17560.1	52.258	155	56	4	1	155	1	137	5.14e-41	134
MsaG017710	AT1G20696.5	60.800	125	39	2	1	125	1	115	8.88e-41	134
MsaG017710	AT1G20696.2	63.559	118	33	2	1	118	1	108	1.11e-40	134
MsaG017710	AT3G51880.2	65.517	116	33	2	26	141	36	144	1.55e-39	132

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Find 46 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAAGAAAGCACTTGG+AGG	0.558317	3:-112399883	None:intergenic
AAAGCACTTGGAGGTCTCTT+AGG	0.309499	3:-112399874	None:intergenic
AAGGAAACCAGCCAAGGGAA+AGG	0.549929	3:+112399831	MsaT017710.1:CDS
AAGGGCGCCGCCACTACCAA+GGG	0.571773	3:+112399805	MsaT017710.1:CDS
AATGAGGATGATGATGAGGA+TGG	0.627725	3:+112400717	MsaT017710.1:CDS
AGAATATGAGAAAACCATGA+AGG	0.619628	3:+112400531	MsaT017710.1:CDS
AGCAAAAGCAGAGAAAAGGA+AGG	0.642820	3:+112400507	MsaT017710.1:CDS
AGCCAAGGGAAAGGAACCAA+AGG	0.561691	3:+112399840	MsaT017710.1:CDS
AGGCTTGCCGTGAATAAGAA+GGG	0.612713	3:+112399787	MsaT017710.1:intron
ATGAAAACGAAGAAAGCACT+TGG	0.589018	3:-112399886	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	112399549	112400859	112399549	ID=MsaG017710
Chr3	mRNA	112399549	112400859	112399549	ID=MsaT017710.1;Parent=MsaG017710
Chr3	exon	112399549	112399595	112399549	ID=MsaT017710.1.exon1;Parent=MsaT017710.1
Chr3	CDS	112399549	112399595	112399549	ID=cds.MsaT017710.1;Parent=MsaT017710.1
Chr3	exon	112399789	112399908	112399789	ID=MsaT017710.1.exon2;Parent=MsaT017710.1
Chr3	CDS	112399789	112399908	112399789	ID=cds.MsaT017710.1;Parent=MsaT017710.1
Chr3	exon	112400217	112400274	112400217	ID=MsaT017710.1.exon3;Parent=MsaT017710.1
Chr3	CDS	112400217	112400274	112400217	ID=cds.MsaT017710.1;Parent=MsaT017710.1
Chr3	exon	112400356	112400400	112400356	ID=MsaT017710.1.exon4;Parent=MsaT017710.1
Chr3	CDS	112400356	112400400	112400356	ID=cds.MsaT017710.1;Parent=MsaT017710.1
Chr3	exon	112400490	112400570	112400490	ID=MsaT017710.1.exon5;Parent=MsaT017710.1
Chr3	CDS	112400490	112400570	112400490	ID=cds.MsaT017710.1;Parent=MsaT017710.1
Chr3	exon	112400651	112400749	112400651	ID=MsaT017710.1.exon6;Parent=MsaT017710.1
Chr3	CDS	112400651	112400749	112400651	ID=cds.MsaT017710.1;Parent=MsaT017710.1
Chr3	exon	112400842	112400859	112400842	ID=MsaT017710.1.exon7;Parent=MsaT017710.1
Chr3	CDS	112400842	112400859	112400842	ID=cds.MsaT017710.1;Parent=MsaT017710.1

Gene Sequence

>MsaT017710.1

ATGAAAGGAGCCAAGTCCAAGGGTGAATCCAAGAAAGCCGATGCTAAGCTTGCCGTGAATAAGAAGGGCGCCGCCACTACCAAGGGCGGAAGGAAACCAGCCAAGGGAAAGGAACCAAAGGACCCTAACAAGCCTAAGAGACCTCCAAGTGCTTTCTTCGTTTTCATGGAGGATTTTAGGAAGCAGTTCAAGAAGGACAACCCTGACAACAAAGCTGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGTCATTGTCTGTAGCTGAGAAAGCACCATATGCAGCAAAAGCAGAGAAAAGGAAGGCAGAATATGAGAAAACCATGAAGGCATATAACAAGAAACAGGCTGAAGGTCCAGCTGCTGTTGAGGAAGAAGAATCTGGGAAATCAGAATCTGAAGTGCATGATGAGAATGAGGATGATGATGAGGATGGCAGTGAAGAGGAGGAGGATGACGAATAG

Protein sequence

>MsaT017710.1

MKGAKSKGESKKADAKLAVNKKGAATTKGGRKPAKGKEPKDPNKPKRPPSAFFVFMEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLSVAEKAPYAAKAEKRKAEYEKTMKAYNKKQAEGPAAVEEEESGKSESEVHDENEDDDEDGSEEEEDDE*