Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017735 | AES74121.2 | 100.000 | 70 | 0 | 0 | 1 | 70 | 1 | 70 | 2.04e-42 | 150 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017735 | sp|Q9S851|NAC31_ARATH | 70.000 | 70 | 19 | 2 | 1 | 70 | 1 | 68 | 3.84e-27 | 103 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017735 | tr|G7J6G2|G7J6G2_MEDTR | 100.000 | 70 | 0 | 0 | 1 | 70 | 1 | 70 | 9.74e-43 | 150 |
Gene ID | Type | Classification |
---|---|---|
MsaG017735 | TF | NAC |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017735 | MtrunA17_Chr3g0144271 | 100.000 | 70 | 0 | 0 | 1 | 70 | 1 | 70 | 1.79e-45 | 149 |
MsaG017735 | MtrunA17_Chr1g0147421 | 60.000 | 55 | 22 | 0 | 17 | 71 | 21 | 75 | 3.86e-19 | 79.0 |
MsaG017735 | MtrunA17_Chr2g0316971 | 75.000 | 48 | 11 | 1 | 23 | 70 | 23 | 69 | 3.47e-18 | 76.3 |
MsaG017735 | MtrunA17_Chr6g0453451 | 55.714 | 70 | 27 | 2 | 1 | 70 | 1 | 66 | 5.72e-18 | 75.5 |
MsaG017735 | MtrunA17_Chr3g0113011 | 55.738 | 61 | 25 | 2 | 12 | 71 | 7 | 66 | 1.58e-17 | 69.3 |
MsaG017735 | MtrunA17_Chr6g0461661 | 62.500 | 48 | 17 | 1 | 23 | 70 | 18 | 64 | 5.76e-16 | 70.1 |
MsaG017735 | MtrunA17_Chr6g0484441 | 61.538 | 52 | 19 | 1 | 20 | 71 | 2 | 52 | 7.05e-16 | 69.7 |
MsaG017735 | MtrunA17_Chr3g0139331 | 59.615 | 52 | 20 | 1 | 20 | 71 | 8 | 58 | 9.23e-16 | 69.3 |
MsaG017735 | MtrunA17_Chr7g0253011 | 62.500 | 48 | 17 | 1 | 23 | 70 | 17 | 63 | 2.97e-15 | 68.2 |
MsaG017735 | MtrunA17_Chr3g0091921 | 53.125 | 64 | 24 | 2 | 7 | 70 | 5 | 62 | 1.05e-14 | 66.2 |
MsaG017735 | MtrunA17_Chr3g0113041 | 50.820 | 61 | 28 | 2 | 12 | 71 | 7 | 66 | 1.43e-14 | 61.6 |
MsaG017735 | MtrunA17_Chr4g0060931 | 54.237 | 59 | 25 | 2 | 12 | 70 | 7 | 63 | 1.73e-14 | 65.9 |
MsaG017735 | MtrunA17_Chr2g0309891 | 60.417 | 48 | 18 | 1 | 23 | 70 | 6 | 52 | 5.13e-14 | 64.7 |
MsaG017735 | MtrunA17_Chr5g0433781 | 58.000 | 50 | 20 | 1 | 22 | 71 | 5 | 53 | 6.17e-14 | 64.3 |
MsaG017735 | MtrunA17_Chr3g0109821 | 57.143 | 49 | 20 | 1 | 23 | 71 | 6 | 53 | 1.31e-13 | 63.5 |
MsaG017735 | MtrunA17_Chr6g0481091 | 58.333 | 48 | 19 | 1 | 22 | 69 | 5 | 51 | 5.72e-13 | 60.8 |
MsaG017735 | MtrunA17_Chr2g0312321 | 54.902 | 51 | 20 | 1 | 20 | 70 | 8 | 55 | 6.58e-13 | 61.2 |
MsaG017735 | MtrunA17_Chr7g0214071 | 53.571 | 56 | 25 | 1 | 16 | 71 | 8 | 62 | 1.47e-12 | 60.1 |
MsaG017735 | MtrunA17_Chr8g0345711 | 53.061 | 49 | 23 | 0 | 23 | 71 | 12 | 60 | 1.68e-12 | 58.9 |
MsaG017735 | MtrunA17_Chr4g0017921 | 58.333 | 48 | 19 | 1 | 22 | 69 | 7 | 53 | 2.67e-12 | 59.7 |
MsaG017735 | MtrunA17_Chr2g0318101 | 48.387 | 62 | 30 | 2 | 11 | 71 | 2 | 62 | 1.60e-11 | 57.8 |
MsaG017735 | MtrunA17_Chr8g0345731 | 55.102 | 49 | 22 | 0 | 23 | 71 | 24 | 72 | 1.62e-11 | 56.2 |
MsaG017735 | MtrunA17_Chr2g0309331 | 53.704 | 54 | 24 | 1 | 16 | 69 | 3 | 55 | 1.77e-11 | 57.4 |
MsaG017735 | MtrunA17_Chr7g0217721 | 50.000 | 60 | 28 | 2 | 12 | 70 | 7 | 65 | 2.17e-11 | 57.4 |
MsaG017735 | MtrunA17_Chr3g0124761 | 50.943 | 53 | 25 | 1 | 19 | 71 | 3 | 54 | 3.80e-11 | 56.2 |
MsaG017735 | MtrunA17_Chr7g0217711 | 50.000 | 60 | 28 | 2 | 12 | 70 | 7 | 65 | 5.44e-11 | 55.1 |
MsaG017735 | MtrunA17_Chr5g0417791 | 52.083 | 48 | 22 | 1 | 23 | 70 | 3 | 49 | 5.50e-11 | 55.8 |
MsaG017735 | MtrunA17_Chr7g0263931 | 49.123 | 57 | 28 | 1 | 14 | 70 | 2 | 57 | 7.08e-11 | 55.8 |
MsaG017735 | MtrunA17_Chr8g0345721 | 39.437 | 71 | 38 | 1 | 6 | 71 | 13 | 83 | 7.20e-11 | 55.1 |
MsaG017735 | MtrunA17_Chr5g0405211 | 52.000 | 50 | 23 | 1 | 20 | 69 | 5 | 53 | 8.59e-11 | 55.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017735 | AT1G76420.1 | 70.000 | 70 | 19 | 2 | 1 | 70 | 1 | 68 | 3.90e-28 | 103 |
MsaG017735 | AT5G53950.1 | 66.038 | 53 | 17 | 1 | 19 | 71 | 13 | 64 | 1.57e-18 | 77.8 |
MsaG017735 | AT2G24430.2 | 58.065 | 62 | 23 | 2 | 11 | 70 | 2 | 62 | 4.47e-18 | 75.9 |
MsaG017735 | AT2G24430.1 | 58.065 | 62 | 23 | 2 | 11 | 70 | 2 | 62 | 4.47e-18 | 75.9 |
MsaG017735 | AT3G29035.1 | 58.462 | 65 | 23 | 2 | 6 | 70 | 10 | 70 | 1.95e-17 | 74.3 |
MsaG017735 | AT5G39610.1 | 70.833 | 48 | 13 | 1 | 23 | 70 | 20 | 66 | 1.95e-17 | 73.9 |
MsaG017735 | AT3G15170.1 | 58.491 | 53 | 21 | 1 | 18 | 70 | 15 | 66 | 9.03e-17 | 72.4 |
MsaG017735 | AT5G18270.2 | 66.667 | 48 | 15 | 1 | 23 | 70 | 21 | 67 | 1.81e-16 | 71.6 |
MsaG017735 | AT5G18270.1 | 66.667 | 48 | 15 | 1 | 23 | 70 | 21 | 67 | 1.85e-16 | 71.6 |
MsaG017735 | AT5G61430.1 | 56.250 | 64 | 25 | 2 | 7 | 70 | 2 | 62 | 3.88e-16 | 70.9 |
MsaG017735 | AT3G18400.1 | 61.538 | 52 | 19 | 1 | 20 | 71 | 2 | 52 | 5.39e-16 | 70.1 |
MsaG017735 | AT5G07680.1 | 61.404 | 57 | 20 | 2 | 15 | 70 | 8 | 63 | 2.56e-15 | 68.6 |
MsaG017735 | AT3G04060.1 | 62.500 | 48 | 17 | 1 | 23 | 70 | 20 | 66 | 8.60e-15 | 67.0 |
MsaG017735 | AT5G07680.2 | 66.667 | 48 | 15 | 1 | 23 | 70 | 3 | 49 | 1.08e-14 | 66.6 |
MsaG017735 | AT3G03200.1 | 63.265 | 49 | 17 | 1 | 23 | 71 | 6 | 53 | 1.57e-14 | 66.6 |
MsaG017735 | AT5G17260.1 | 61.224 | 49 | 18 | 1 | 23 | 71 | 6 | 53 | 4.12e-14 | 65.5 |
MsaG017735 | AT3G12977.1 | 50.980 | 51 | 24 | 1 | 20 | 70 | 15 | 64 | 9.15e-14 | 63.9 |
MsaG017735 | AT1G56010.2 | 49.020 | 51 | 26 | 0 | 20 | 70 | 16 | 66 | 2.35e-13 | 63.2 |
MsaG017735 | AT1G65910.1 | 55.102 | 49 | 21 | 1 | 23 | 71 | 6 | 53 | 2.56e-13 | 63.2 |
MsaG017735 | AT3G17730.1 | 56.250 | 48 | 20 | 1 | 22 | 69 | 5 | 51 | 4.49e-13 | 61.6 |
MsaG017735 | AT1G54330.1 | 58.333 | 48 | 19 | 1 | 23 | 70 | 6 | 52 | 1.10e-12 | 61.2 |
MsaG017735 | AT4G10350.1 | 56.250 | 48 | 20 | 1 | 22 | 69 | 8 | 54 | 2.29e-12 | 60.5 |
MsaG017735 | AT5G39820.1 | 43.662 | 71 | 34 | 3 | 1 | 70 | 1 | 66 | 6.76e-12 | 58.9 |
MsaG017735 | AT1G33280.1 | 56.250 | 48 | 20 | 1 | 22 | 69 | 7 | 53 | 1.03e-11 | 58.5 |
MsaG017735 | AT2G43000.1 | 49.123 | 57 | 27 | 2 | 14 | 70 | 10 | 64 | 1.16e-11 | 58.2 |
MsaG017735 | AT1G01720.1 | 55.102 | 49 | 21 | 1 | 23 | 71 | 7 | 54 | 1.73e-11 | 57.8 |
MsaG017735 | AT5G04395.1 | 52.000 | 50 | 23 | 1 | 20 | 69 | 25 | 73 | 2.75e-11 | 56.2 |
MsaG017735 | AT5G13180.1 | 53.061 | 49 | 22 | 1 | 23 | 71 | 14 | 61 | 3.09e-11 | 56.6 |
MsaG017735 | AT5G08790.1 | 54.717 | 53 | 23 | 1 | 18 | 70 | 2 | 53 | 6.49e-11 | 56.2 |
MsaG017735 | AT4G17980.1 | 53.061 | 49 | 22 | 1 | 23 | 71 | 6 | 53 | 9.69e-11 | 55.5 |
Find 13 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGGTCTACCACCTGGTTTC+AGG | 0.277471 | 3:-112614127 | MsaT017735.1:CDS |
AACCTTAGAAGCCAAATAAA+AGG | 0.317144 | 3:+112614076 | None:intergenic |
TGTGAGCCATGGGAACTTCC+AGG | 0.411730 | 3:-112613999 | MsaT017735.1:intron |
TAATGAGTTCTTCATCAGTT+GGG | 0.509577 | 3:+112614099 | None:intergenic |
GTAATGAGTTCTTCATCAGT+TGG | 0.518253 | 3:+112614098 | None:intergenic |
CCCATGGCTCACATCTATTG+AGG | 0.558723 | 3:+112614009 | None:intergenic |
ACCTCAATAGATGTGAGCCA+TGG | 0.559776 | 3:-112614010 | MsaT017735.1:CDS |
TCCCAGTATGATGTTAGCAA+TGG | 0.563508 | 3:-112614195 | None:intergenic |
AAAATACCTGGAAGTTCCCA+TGG | 0.594367 | 3:+112613993 | None:intergenic |
CCTCAATAGATGTGAGCCAT+GGG | 0.602795 | 3:-112614009 | MsaT017735.1:CDS |
GTTGGGTGAAACCTGAAACC+AGG | 0.645484 | 3:+112614116 | None:intergenic |
AACGAACAAGGTCTACCACC+TGG | 0.649637 | 3:-112614134 | MsaT017735.1:CDS |
GGGTGAAACCTGAAACCAGG+TGG | 0.745805 | 3:+112614119 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 112613063 | 112614210 | 112613063 | ID=MsaG017735 |
Chr3 | mRNA | 112613063 | 112614210 | 112613063 | ID=MsaT017735.1;Parent=MsaG017735 |
Chr3 | exon | 112613063 | 112613067 | 112613063 | ID=MsaT017735.1.exon2;Parent=MsaT017735.1 |
Chr3 | CDS | 112613063 | 112613067 | 112613063 | ID=cds.MsaT017735.1;Parent=MsaT017735.1 |
Chr3 | exon | 112614000 | 112614210 | 112614000 | ID=MsaT017735.1.exon1;Parent=MsaT017735.1 |
Chr3 | CDS | 112614000 | 112614210 | 112614000 | ID=cds.MsaT017735.1;Parent=MsaT017735.1 |
Gene Sequence |
Protein sequence |