AlfalfaGEDB | MsaG017735

M. sativa ssp. caerulea / MsaG017735

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010199 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048507 GO:0048532 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090691 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017735	AES74121.2	100.000	70	0	0	1	70	1	70	2.04e-42	150

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017735	sp\|Q9S851\|NAC31_ARATH	70.000	70	19	2	1	70	1	68	3.84e-27	103

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017735	tr\|G7J6G2\|G7J6G2_MEDTR	100.000	70	0	0	1	70	1	70	9.74e-43	150

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG017735	TF	NAC

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017735	MtrunA17_Chr3g0144271	100.000	70	0	0	1	70	1	70	1.79e-45	149
MsaG017735	MtrunA17_Chr1g0147421	60.000	55	22	0	17	71	21	75	3.86e-19	79.0
MsaG017735	MtrunA17_Chr2g0316971	75.000	48	11	1	23	70	23	69	3.47e-18	76.3
MsaG017735	MtrunA17_Chr6g0453451	55.714	70	27	2	1	70	1	66	5.72e-18	75.5
MsaG017735	MtrunA17_Chr3g0113011	55.738	61	25	2	12	71	7	66	1.58e-17	69.3
MsaG017735	MtrunA17_Chr6g0461661	62.500	48	17	1	23	70	18	64	5.76e-16	70.1
MsaG017735	MtrunA17_Chr6g0484441	61.538	52	19	1	20	71	2	52	7.05e-16	69.7
MsaG017735	MtrunA17_Chr3g0139331	59.615	52	20	1	20	71	8	58	9.23e-16	69.3
MsaG017735	MtrunA17_Chr7g0253011	62.500	48	17	1	23	70	17	63	2.97e-15	68.2
MsaG017735	MtrunA17_Chr3g0091921	53.125	64	24	2	7	70	5	62	1.05e-14	66.2

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017735	AT1G76420.1	70.000	70	19	2	1	70	1	68	3.90e-28	103
MsaG017735	AT5G53950.1	66.038	53	17	1	19	71	13	64	1.57e-18	77.8
MsaG017735	AT2G24430.2	58.065	62	23	2	11	70	2	62	4.47e-18	75.9
MsaG017735	AT2G24430.1	58.065	62	23	2	11	70	2	62	4.47e-18	75.9
MsaG017735	AT3G29035.1	58.462	65	23	2	6	70	10	70	1.95e-17	74.3
MsaG017735	AT5G39610.1	70.833	48	13	1	23	70	20	66	1.95e-17	73.9
MsaG017735	AT3G15170.1	58.491	53	21	1	18	70	15	66	9.03e-17	72.4
MsaG017735	AT5G18270.2	66.667	48	15	1	23	70	21	67	1.81e-16	71.6
MsaG017735	AT5G18270.1	66.667	48	15	1	23	70	21	67	1.85e-16	71.6
MsaG017735	AT5G61430.1	56.250	64	25	2	7	70	2	62	3.88e-16	70.9

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Find 13 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCTGGAAGTTCCCA+TGG	0.594367	3:+112613993	None:intergenic
AACCTTAGAAGCCAAATAAA+AGG	0.317144	3:+112614076	None:intergenic
AACGAACAAGGTCTACCACC+TGG	0.649637	3:-112614134	MsaT017735.1:CDS
AAGGTCTACCACCTGGTTTC+AGG	0.277471	3:-112614127	MsaT017735.1:CDS
ACCTCAATAGATGTGAGCCA+TGG	0.559776	3:-112614010	MsaT017735.1:CDS
CCCATGGCTCACATCTATTG+AGG	0.558723	3:+112614009	None:intergenic
CCTCAATAGATGTGAGCCAT+GGG	0.602795	3:-112614009	MsaT017735.1:CDS
GGGTGAAACCTGAAACCAGG+TGG	0.745805	3:+112614119	None:intergenic
GTAATGAGTTCTTCATCAGT+TGG	0.518253	3:+112614098	None:intergenic
GTTGGGTGAAACCTGAAACC+AGG	0.645484	3:+112614116	None:intergenic

Showing 1 to 10 of 13 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	112613063	112614210	112613063	ID=MsaG017735
Chr3	mRNA	112613063	112614210	112613063	ID=MsaT017735.1;Parent=MsaG017735
Chr3	exon	112613063	112613067	112613063	ID=MsaT017735.1.exon2;Parent=MsaT017735.1
Chr3	CDS	112613063	112613067	112613063	ID=cds.MsaT017735.1;Parent=MsaT017735.1
Chr3	exon	112614000	112614210	112614000	ID=MsaT017735.1.exon1;Parent=MsaT017735.1
Chr3	CDS	112614000	112614210	112614000	ID=cds.MsaT017735.1;Parent=MsaT017735.1

Gene Sequence	>MsaT017735.1 ATGATGTTAGCAATGGAAGAAGTACTATGTGAACTTAGTGATCATGAAAAGAAAAACGAACAAGGTCTACCACCTGGTTTCAGGTTTCACCCAACTGATGAAGAACTCATTACCTTTTATTTGGCTTCTAAGGTTTTCAAAAATACTTATTTCAATAATGTCAAGTTTGCTGAAGTTGACCTCAATAGATGTGAGCCATGGGAACTTCCAGGTTGA
Protein sequence	>MsaT017735.1 MMLAMEEVLCELSDHEKKNEQGLPPGFRFHPTDEELITFYLASKVFKNTYFNNVKFAEVDLNRCEPWELPG*