AlfalfaGEDB | MsaG017743

M. sativa ssp. caerulea / MsaG017743

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016143 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901135 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901657 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF01388.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017743	XP_003603883.2	94.226	381	10	3	1	378	1	372	0.0	731

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017743	sp\|Q0WNR6\|ARID5_ARATH	73.941	307	75	5	70	375	132	434	2.62e-153	442

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017743	tr\|G7J6H5\|G7J6H5_MEDTR	94.226	381	10	3	1	378	1	372	0.0	731

TFs/TRs:

Gene ID	Type	Classification
MsaG017743	TR	ARID

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017743	MtrunA17_Chr3g0144341	94.226	381	10	3	1	378	1	372	0.0	731
MsaG017743	MtrunA17_Chr5g0407561	57.895	380	125	7	24	376	232	603	1.10e-140	413

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017743	AT1G76510.2	73.941	307	75	5	70	375	132	434	2.67e-154	442
MsaG017743	AT1G76510.4	73.941	307	75	5	70	375	132	434	2.67e-154	442
MsaG017743	AT1G76510.1	73.941	307	75	5	70	375	132	434	2.67e-154	442
MsaG017743	AT1G76510.3	69.231	325	72	6	75	375	137	457	3.63e-147	426
MsaG017743	AT1G20910.1	67.974	306	95	3	70	375	96	398	1.06e-140	406
MsaG017743	AT2G17410.1	64.238	302	101	3	75	375	489	784	5.54e-126	381
MsaG017743	AT2G17410.3	64.238	302	101	3	75	375	489	784	5.54e-126	381
MsaG017743	AT2G17410.2	64.238	302	95	3	75	375	489	778	5.50e-125	378
MsaG017743	AT1G20910.2	67.029	276	88	3	70	345	96	368	1.59e-120	354

Find 97 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAAGTATATGCTCTAGTTCC+TGG	0.233784	3:-112683327	MsaT017743.1:CDS
TTGGCATGCTCAGCGCCTTA+TGG	0.294765	3:-112684684	MsaT017743.1:CDS
GAAAAGCATAAGAGAGAGAT+TGG	0.315271	3:-112685756	MsaT017743.1:CDS
TTTGTAGACCGCTGTTTATC+AGG	0.316112	3:-112684759	MsaT017743.1:intron
CAATGGGACTTGATAAAACT+TGG	0.325300	3:+112687230	None:intergenic
GCAGCAGCAGCATCAGCAGC+AGG	0.327412	3:+112687557	None:intergenic
GTTGGACGACTTGTTATAAC+TGG	0.347669	3:-112682492	MsaT017743.1:CDS
TCTGTAACGTTCTTAACTTT+AGG	0.348861	3:+112687467	None:intergenic
GGGTATTACTCCCTTCAAAA+AGG	0.360882	3:-112682442	MsaT017743.1:intron
ACGTTCTTAACTTTAGGTTT+TGG	0.366210	3:+112687473	None:intergenic
TGGCATGCTCAGCGCCTTAT+GGG	0.389962	3:-112684683	MsaT017743.1:CDS
TTTCCACACTCGATGGTTGA+TGG	0.396113	3:+112685706	None:intergenic
AGGTAGGGCGCGGAGGGATG+CGG	0.401043	3:-112684726	MsaT017743.1:CDS
ATCAATGGAGGGTCATGAAA+TGG	0.404745	3:-112687633	None:intergenic
AACTAACAACAGCAGATGTT+TGG	0.411334	3:+112682179	None:intergenic
GGTTCCTGAGTCAGCTGTTA+AGG	0.416729	3:-112684651	MsaT017743.1:intron
ATGCTCGAGCTCTTTCATAA+AGG	0.418085	3:+112687287	None:intergenic
CTCCGCGCCCTACCTGAGCC+TGG	0.423147	3:+112684734	None:intergenic
CAGAAAATGCTGACAATCCA+TGG	0.427370	3:-112682464	MsaT017743.1:CDS
GTTTATCAGGCTCCAGGCTC+AGG	0.427487	3:-112684746	MsaT017743.1:CDS
AAAAGCATAAGAGAGAGATT+GGG	0.443286	3:-112685755	MsaT017743.1:CDS
TTGATCTTCACCCAATCAGC+TGG	0.444221	3:+112683495	None:intergenic
GACAGAGCTGCAAACATAGA+AGG	0.444672	3:-112684354	MsaT017743.1:CDS
GTTATAACAAGTCGTCCAAC+TGG	0.451498	3:+112682495	None:intergenic
TGATGAAGCCGGTACGCCTA+TGG	0.462210	3:-112687319	MsaT017743.1:CDS
AGGCTCAGGTAGGGCGCGGA+GGG	0.464479	3:-112684732	MsaT017743.1:CDS
CTGCACGTGCAATGCAAGGT+TGG	0.470880	3:-112684703	MsaT017743.1:CDS
TTTCTACAGATCGAGGTCCT+TGG	0.482284	3:-112687265	MsaT017743.1:CDS
AAGTATATGCTCTAGTTCCT+GGG	0.483026	3:-112683326	MsaT017743.1:CDS
TGTACGCGTTCCTTTCGAGC+AGG	0.485574	3:-112682140	MsaT017743.1:CDS
CTCCAGGCTCAGGTAGGGCG+CGG	0.493114	3:-112684736	MsaT017743.1:CDS
ACATACTTGAGGCAATTCAA+TGG	0.496631	3:+112687213	None:intergenic
GAACCTCGCCGTATCCCATA+AGG	0.497226	3:+112684669	None:intergenic
ATAAAGGCTTCTCGCTCCAT+AGG	0.502198	3:+112687303	None:intergenic
CAGGCTCAGGTAGGGCGCGG+AGG	0.503793	3:-112684733	MsaT017743.1:CDS
GAAGATCAATGTGCGGGAAA+CGG	0.506451	3:-112683481	MsaT017743.1:intron
TTGTTCAAGTTGAGGAGTGA+GGG	0.508455	3:+112687508	None:intergenic
ACAGAGAACACCGTCTGGTA+TGG	0.509878	3:-112684379	MsaT017743.1:CDS
ACCGCTGTTTATCAGGCTCC+AGG	0.511245	3:-112684752	MsaT017743.1:CDS
AAAGCATAAGAGAGAGATTG+GGG	0.512312	3:-112685754	MsaT017743.1:CDS
GAAGTCAATAATAACAATGC+TGG	0.518567	3:-112687446	MsaT017743.1:CDS
GGTTGATGGAGTGATCCGAC+AGG	0.527898	3:+112685720	None:intergenic
TCTGCTGTTGTTAGTTTGCA+TGG	0.528508	3:-112682172	MsaT017743.1:CDS
CATACTTGAGGCAATTCAAT+GGG	0.529182	3:+112687214	None:intergenic
TGATCTTCACCCAATCAGCT+GGG	0.529764	3:+112683496	None:intergenic
ACCTCTTCACGAAGGAGCCC+AGG	0.532624	3:+112683309	None:intergenic
CTGCAAACATAGAAGGAGAC+AGG	0.533192	3:-112684347	MsaT017743.1:CDS
TGTTGTTGTTGTTCAAGTTG+AGG	0.536049	3:+112687500	None:intergenic
TTCTCGCTCCATAGGCGTAC+CGG	0.546405	3:+112687311	None:intergenic
CACACAGCTCCCTGCTCGAA+AGG	0.552889	3:+112682130	None:intergenic
TCGAAGTTGTGGCGGTCAGT+AGG	0.553786	3:-112686414	MsaT017743.1:CDS
GTCGTCCAACTGGATCGGAT+TGG	0.556323	3:+112682505	None:intergenic
GCGGCTGCACGTGCAATGCA+AGG	0.557817	3:-112684707	MsaT017743.1:CDS
GCTCAGCGCCTTATGGGATA+CGG	0.558831	3:-112684677	MsaT017743.1:CDS
GGACTTGCACTACAGTCTCA+TGG	0.558888	3:-112686140	MsaT017743.1:CDS
AACAAACAGAGAACACCGTC+TGG	0.560624	3:-112684384	MsaT017743.1:CDS
AACAAGTCGTCCAACTGGAT+CGG	0.560628	3:+112682500	None:intergenic
TCCTGGGCTCCTTCGTGAAG+AGG	0.564218	3:-112683310	MsaT017743.1:intron
GTACGCGTTCCTTTCGAGCA+GGG	0.571183	3:-112682139	MsaT017743.1:CDS
AATGGGACTTGATAAAACTT+GGG	0.574691	3:+112687231	None:intergenic
GTTGTTCAAGTTGAGGAGTG+AGG	0.579571	3:+112687507	None:intergenic
AGAAAATGCTGACAATCCAT+GGG	0.582520	3:-112682463	MsaT017743.1:CDS
AGGTAACTGCATCGAAGTTG+TGG	0.585142	3:-112686425	MsaT017743.1:CDS
TAGGTTGGTCACAGCAGTAG+TGG	0.586143	3:-112683529	MsaT017743.1:CDS
TGGAGAGCTGTTATCAGACT+AGG	0.587815	3:-112686907	MsaT017743.1:CDS
TGGAGTGGATCAATTCTCGC+AGG	0.587913	3:+112682199	None:intergenic
TCAGGCTCCAGGCTCAGGTA+GGG	0.588503	3:-112684741	MsaT017743.1:CDS
ATATCTAGTCCTTACTTGGG+AGG	0.589671	3:+112686378	None:intergenic
CTTGGGAGGCTTGAATTCCA+AGG	0.591311	3:+112687248	None:intergenic
TTGAAGGGAGTAATACCCCA+TGG	0.594473	3:+112682447	None:intergenic
CTAGTCCTTACTTGGGAGGG+TGG	0.595303	3:+112686382	None:intergenic
CAATAATAACAATGCTGGCG+AGG	0.595839	3:-112687441	MsaT017743.1:intron
ATCAGGCTCCAGGCTCAGGT+AGG	0.598841	3:-112684742	MsaT017743.1:CDS
ATGGCTGCTTATGATGAAGC+CGG	0.600910	3:-112687330	MsaT017743.1:CDS
TATCTAGTCCTTACTTGGGA+GGG	0.608180	3:+112686379	None:intergenic
ACTCCATCAACCATCGAGTG+TGG	0.608784	3:-112685709	MsaT017743.1:CDS
GTCACAGCAGTAGTGGACAT+TGG	0.609262	3:-112683522	MsaT017743.1:CDS
CAGACCTTAACAGCTGACTC+AGG	0.614584	3:+112684647	None:intergenic
GGGACTTGATAAAACTTGGG+AGG	0.626061	3:+112687234	None:intergenic
GATCTTCACCCAATCAGCTG+GGG	0.626273	3:+112683497	None:intergenic
CTCAGACAGAAATCAATGGA+GGG	0.633845	3:-112687644	None:intergenic
CAGACTAGGTGGCTATGAAG+TGG	0.636788	3:-112686893	MsaT017743.1:intron
CGGGTCCAATCCGATCCAGT+TGG	0.638558	3:-112682510	MsaT017743.1:CDS
TTGGGTGAAGATCAATGTGC+GGG	0.643862	3:-112683487	MsaT017743.1:CDS
GGGGAGTTACAGCTCCCTGT+CGG	0.649300	3:-112685735	MsaT017743.1:CDS
ATCTTCACCCAATCAGCTGG+GGG	0.651763	3:+112683498	None:intergenic
TCGAGCATTTCTACAGATCG+AGG	0.659811	3:-112687272	MsaT017743.1:CDS
ACAACAGCAGATGTTTGGAG+TGG	0.672692	3:+112682184	None:intergenic
GCGCCTTATGGGATACGGCG+AGG	0.677937	3:-112684672	MsaT017743.1:CDS
GTTGATGGAGTGATCCGACA+GGG	0.680833	3:+112685721	None:intergenic
TAACTGCATCGAAGTTGTGG+CGG	0.684336	3:-112686422	MsaT017743.1:CDS
GCTCTGTCATCCATACCAGA+CGG	0.693775	3:+112684369	None:intergenic
GCCTGGAGCCTGATAAACAG+CGG	0.707020	3:+112684751	None:intergenic
ATTGGGTGAAGATCAATGTG+CGG	0.707083	3:-112683488	MsaT017743.1:CDS
AGAGCTGTTATCAGACTAGG+TGG	0.717567	3:-112686904	MsaT017743.1:CDS
CAGAGGTTACCTCTTCACGA+AGG	0.753208	3:+112683301	None:intergenic
GAAAATGCTGACAATCCATG+GGG	0.772709	3:-112682462	MsaT017743.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	112682129	112687651	112682129	ID=MsaG017743
Chr3	mRNA	112682129	112687651	112682129	ID=MsaT017743.1;Parent=MsaG017743
Chr3	exon	112682129	112682233	112682129	ID=MsaT017743.1.exon13;Parent=MsaT017743.1
Chr3	CDS	112682129	112682233	112682129	ID=cds.MsaT017743.1;Parent=MsaT017743.1
Chr3	exon	112682443	112682535	112682443	ID=MsaT017743.1.exon12;Parent=MsaT017743.1
Chr3	CDS	112682443	112682535	112682443	ID=cds.MsaT017743.1;Parent=MsaT017743.1
Chr3	exon	112683311	112683361	112683311	ID=MsaT017743.1.exon11;Parent=MsaT017743.1
Chr3	CDS	112683311	112683361	112683311	ID=cds.MsaT017743.1;Parent=MsaT017743.1
Chr3	exon	112683482	112683548	112683482	ID=MsaT017743.1.exon10;Parent=MsaT017743.1
Chr3	CDS	112683482	112683548	112683482	ID=cds.MsaT017743.1;Parent=MsaT017743.1
Chr3	exon	112684345	112684414	112684345	ID=MsaT017743.1.exon9;Parent=MsaT017743.1
Chr3	CDS	112684345	112684414	112684345	ID=cds.MsaT017743.1;Parent=MsaT017743.1
Chr3	exon	112684492	112684543	112684492	ID=MsaT017743.1.exon8;Parent=MsaT017743.1
Chr3	CDS	112684492	112684543	112684492	ID=cds.MsaT017743.1;Parent=MsaT017743.1
Chr3	exon	112684652	112684774	112684652	ID=MsaT017743.1.exon7;Parent=MsaT017743.1
Chr3	CDS	112684652	112684774	112684652	ID=cds.MsaT017743.1;Parent=MsaT017743.1
Chr3	exon	112685701	112685793	112685701	ID=MsaT017743.1.exon6;Parent=MsaT017743.1
Chr3	CDS	112685701	112685793	112685701	ID=cds.MsaT017743.1;Parent=MsaT017743.1
Chr3	exon	112686116	112686161	112686116	ID=MsaT017743.1.exon5;Parent=MsaT017743.1
Chr3	CDS	112686116	112686161	112686116	ID=cds.MsaT017743.1;Parent=MsaT017743.1
Chr3	exon	112686393	112686445	112686393	ID=MsaT017743.1.exon4;Parent=MsaT017743.1
Chr3	CDS	112686393	112686445	112686393	ID=cds.MsaT017743.1;Parent=MsaT017743.1
Chr3	exon	112686894	112686933	112686894	ID=MsaT017743.1.exon3;Parent=MsaT017743.1
Chr3	CDS	112686894	112686933	112686894	ID=cds.MsaT017743.1;Parent=MsaT017743.1
Chr3	exon	112687219	112687352	112687219	ID=MsaT017743.1.exon2;Parent=MsaT017743.1
Chr3	CDS	112687219	112687352	112687219	ID=cds.MsaT017743.1;Parent=MsaT017743.1
Chr3	exon	112687442	112687651	112687442	ID=MsaT017743.1.exon1;Parent=MsaT017743.1
Chr3	CDS	112687442	112687651	112687442	ID=cds.MsaT017743.1;Parent=MsaT017743.1

Gene Sequence

>MsaT017743.1

ATGGAGGGTCATGAAATGGATCTCGTTCAGAATGCTGCTGCTGCTGCTGCTGATCAACAAATGCTTGATCAACCTGCTGCTGATGCTGCTGCTGCTGCTGATGACACAAAAGTCAATTCTACCCTCACTCCTCAACTTGAACAACAACAACAACAACCAAAACCTAAAGTTAAGAACGTTACAGAAGTCAATAATAACAATGCTGGCGAGATGGCTGCTTATGATGAAGCCGGTACGCCTATGGAGCGAGAAGCCTTTATGAAAGAGCTCGAGCATTTCTACAGATCGAGGTCCTTGGAATTCAAGCCTCCCAAGTTTTATCAAGTCCCATTGAATTGCCTCAAGTTATGGAGAGCTGTTATCAGACTAGGTGGCTATGAAGTGGTAACTGCATCGAAGTTGTGGCGGTCAGTAGGAGAGTCTTTCCACCCTCCCAAGACTTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGAGATTGGGGAGTTACAGCTCCCTGTCGGATCACTCCATCAACCATCGAGTGTGGAAAAAGAGACCGCTGTTTATCAGGCTCCAGGCTCAGGTAGGGCGCGGAGGGATGCGGCTGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTATGGGATACGGCGAGGTTCCTGAGTCAGCTGTTAAGGACAAGAACTTCAATCCCACACCAAAACGTGAAAAGAACCTAAAAAATATCGGTGTGATCAACAAACAGAGAACACCGTCTGGTATGGATGACAGAGCTGCAAACATAGAAGGAGACAGGCAGTTGGTCACAGCAGTAGTGGACATTGGACCCCCAGCTGATTGGGTGAAGATCAATGTGCGGGAAACGAAGGATTGTTTTGAAGTATATGCTCTAGTTCCTGGGCTCCTTCGTGAAGAGGTACGGGTCCAATCCGATCCAGTTGGACGACTTGTTATAACTGGTATGCCAGAAAATGCTGACAATCCATGGGGTATTACTCCCTTCAAAAAGGTTGTGAACTTACCTGCGAGAATTGATCCACTCCAAACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTCGAGCAGGGAGCTGTGTGA

Protein sequence

>MsaT017743.1

MEGHEMDLVQNAAAAAADQQMLDQPAADAAAAADDTKVNSTLTPQLEQQQQQPKPKVKNVTEVNNNNAGEMAAYDEAGTPMEREAFMKELEHFYRSRSLEFKPPKFYQVPLNCLKLWRAVIRLGGYEVVTASKLWRSVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGSLHQPSSVEKETAVYQAPGSGRARRDAAARAMQGWHAQRLMGYGEVPESAVKDKNFNPTPKREKNLKNIGVINKQRTPSGMDDRAANIEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGMPENADNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV*