Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017768 | XP_003603935.2 | 90.511 | 411 | 22 | 4 | 1 | 408 | 1 | 397 | 0.0 | 762 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017768 | sp|Q8GY61|BH063_ARATH | 47.177 | 248 | 88 | 7 | 142 | 376 | 113 | 330 | 2.88e-55 | 188 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017768 | tr|G7J737|G7J737_MEDTR | 90.511 | 411 | 22 | 4 | 1 | 408 | 1 | 397 | 0.0 | 762 |
Gene ID | Type | Classification |
---|---|---|
MsaG017768 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017768 | MtrunA17_Chr3g0144641 | 90.291 | 412 | 22 | 5 | 1 | 408 | 1 | 398 | 0.0 | 758 |
MsaG017768 | MtrunA17_Chr4g0035101 | 51.905 | 420 | 114 | 18 | 1 | 408 | 1 | 344 | 8.26e-122 | 357 |
MsaG017768 | MtrunA17_Chr5g0421111 | 43.448 | 290 | 130 | 10 | 132 | 408 | 290 | 558 | 3.04e-57 | 196 |
MsaG017768 | MtrunA17_Chr7g0234761 | 43.836 | 292 | 141 | 8 | 114 | 397 | 235 | 511 | 2.26e-52 | 182 |
MsaG017768 | MtrunA17_Chr8g0339091 | 42.122 | 311 | 141 | 10 | 114 | 408 | 211 | 498 | 7.59e-52 | 181 |
MsaG017768 | MtrunA17_Chr1g0152131 | 45.000 | 220 | 90 | 4 | 162 | 381 | 220 | 408 | 3.07e-50 | 175 |
MsaG017768 | MtrunA17_Chr8g0365941 | 55.689 | 167 | 61 | 3 | 132 | 289 | 230 | 392 | 6.60e-50 | 175 |
MsaG017768 | MtrunA17_Chr5g0415291 | 51.852 | 162 | 64 | 4 | 135 | 290 | 41 | 194 | 6.47e-42 | 147 |
MsaG017768 | MtrunA17_Chr8g0363921 | 58.904 | 146 | 48 | 3 | 164 | 303 | 108 | 247 | 1.01e-41 | 148 |
MsaG017768 | MtrunA17_Chr3g0131771 | 80.899 | 89 | 17 | 0 | 186 | 274 | 131 | 219 | 3.53e-41 | 148 |
MsaG017768 | MtrunA17_Chr7g0258161 | 61.017 | 118 | 38 | 1 | 178 | 295 | 157 | 266 | 4.98e-41 | 148 |
MsaG017768 | MtrunA17_Chr8g0385911 | 82.558 | 86 | 14 | 1 | 197 | 281 | 140 | 225 | 1.00e-40 | 147 |
MsaG017768 | MtrunA17_Chr1g0174161 | 65.347 | 101 | 35 | 0 | 195 | 295 | 153 | 253 | 7.06e-40 | 145 |
MsaG017768 | MtrunA17_Chr6g0484271 | 69.318 | 88 | 25 | 1 | 198 | 283 | 151 | 238 | 4.63e-33 | 125 |
MsaG017768 | MtrunA17_Chr4g0074161 | 72.727 | 66 | 17 | 1 | 202 | 267 | 206 | 270 | 2.47e-22 | 98.2 |
MsaG017768 | MtrunA17_Chr1g0190731 | 69.697 | 66 | 19 | 1 | 202 | 267 | 193 | 257 | 2.55e-21 | 94.4 |
MsaG017768 | MtrunA17_Chr4g0032951 | 41.071 | 112 | 60 | 2 | 161 | 266 | 308 | 419 | 7.36e-16 | 79.0 |
MsaG017768 | MtrunA17_Chr4g0014771 | 55.385 | 65 | 29 | 0 | 202 | 266 | 118 | 182 | 2.45e-15 | 74.3 |
MsaG017768 | MtrunA17_Chr2g0329041 | 55.385 | 65 | 29 | 0 | 200 | 264 | 330 | 394 | 4.33e-15 | 76.6 |
MsaG017768 | MtrunA17_Chr1g0182791 | 52.174 | 69 | 32 | 1 | 204 | 272 | 319 | 386 | 4.86e-15 | 77.0 |
MsaG017768 | MtrunA17_Chr7g0258181 | 34.615 | 156 | 89 | 6 | 131 | 275 | 163 | 316 | 6.60e-15 | 75.1 |
MsaG017768 | MtrunA17_Chr1g0174271 | 53.623 | 69 | 32 | 0 | 202 | 270 | 298 | 366 | 1.18e-14 | 75.1 |
MsaG017768 | MtrunA17_Chr1g0193321 | 45.205 | 73 | 39 | 1 | 204 | 276 | 464 | 535 | 1.35e-14 | 75.9 |
MsaG017768 | MtrunA17_Chr1g0184841 | 65.152 | 66 | 22 | 1 | 202 | 267 | 120 | 184 | 1.88e-14 | 73.2 |
MsaG017768 | MtrunA17_Chr3g0087771 | 46.753 | 77 | 41 | 0 | 190 | 266 | 310 | 386 | 3.94e-13 | 70.5 |
MsaG017768 | MtrunA17_Chr8g0351881 | 49.231 | 65 | 33 | 0 | 202 | 266 | 316 | 380 | 1.82e-12 | 68.6 |
MsaG017768 | MtrunA17_Chr1g0153241 | 47.692 | 65 | 33 | 1 | 204 | 268 | 87 | 150 | 2.21e-12 | 67.0 |
MsaG017768 | MtrunA17_Chr1g0152651 | 44.828 | 87 | 45 | 2 | 180 | 266 | 254 | 337 | 3.60e-12 | 67.4 |
MsaG017768 | MtrunA17_Chr3g0095391 | 50.000 | 64 | 31 | 1 | 204 | 267 | 311 | 373 | 1.04e-11 | 66.2 |
MsaG017768 | MtrunA17_Chr7g0271251 | 40.777 | 103 | 56 | 3 | 169 | 267 | 395 | 496 | 1.16e-11 | 66.6 |
MsaG017768 | MtrunA17_Chr7g0262691 | 49.206 | 63 | 31 | 1 | 205 | 267 | 255 | 316 | 1.35e-11 | 65.9 |
MsaG017768 | MtrunA17_Chr5g0402031 | 53.571 | 56 | 25 | 1 | 213 | 268 | 116 | 170 | 5.67e-11 | 63.5 |
MsaG017768 | MtrunA17_Chr7g0270871 | 43.939 | 66 | 36 | 1 | 213 | 278 | 213 | 277 | 5.73e-11 | 63.5 |
MsaG017768 | MtrunA17_Chr1g0213791 | 47.059 | 68 | 36 | 0 | 202 | 269 | 265 | 332 | 5.85e-11 | 63.5 |
MsaG017768 | MtrunA17_Chr5g0393721 | 50.000 | 64 | 31 | 1 | 203 | 266 | 225 | 287 | 6.10e-11 | 63.2 |
MsaG017768 | MtrunA17_Chr3g0134741 | 51.562 | 64 | 30 | 1 | 203 | 266 | 230 | 292 | 6.82e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG017768 | AT4G34530.1 | 47.177 | 248 | 88 | 7 | 142 | 376 | 113 | 330 | 2.93e-56 | 188 |
MsaG017768 | AT1G68920.3 | 49.519 | 208 | 82 | 5 | 183 | 389 | 283 | 468 | 3.89e-52 | 181 |
MsaG017768 | AT1G68920.1 | 49.519 | 208 | 82 | 5 | 183 | 389 | 284 | 469 | 4.09e-52 | 181 |
MsaG017768 | AT1G68920.4 | 49.519 | 208 | 82 | 5 | 183 | 389 | 284 | 469 | 4.09e-52 | 181 |
MsaG017768 | AT1G68920.2 | 49.519 | 208 | 82 | 5 | 183 | 389 | 284 | 469 | 4.09e-52 | 181 |
MsaG017768 | AT3G07340.2 | 53.968 | 189 | 79 | 3 | 198 | 383 | 254 | 437 | 4.48e-52 | 180 |
MsaG017768 | AT3G07340.1 | 54.211 | 190 | 77 | 4 | 198 | 384 | 254 | 436 | 9.09e-52 | 180 |
MsaG017768 | AT2G18300.1 | 43.986 | 291 | 106 | 13 | 90 | 377 | 91 | 327 | 4.63e-51 | 175 |
MsaG017768 | AT2G18300.2 | 52.500 | 200 | 73 | 7 | 90 | 287 | 91 | 270 | 8.69e-50 | 171 |
MsaG017768 | AT4G36540.2 | 42.652 | 279 | 101 | 12 | 22 | 291 | 2 | 230 | 1.22e-49 | 170 |
MsaG017768 | AT1G10120.2 | 45.833 | 216 | 78 | 4 | 165 | 380 | 170 | 346 | 1.79e-49 | 171 |
MsaG017768 | AT1G10120.1 | 45.833 | 216 | 78 | 4 | 165 | 380 | 170 | 346 | 1.79e-49 | 171 |
MsaG017768 | AT2G18300.3 | 52.500 | 200 | 73 | 7 | 90 | 287 | 91 | 270 | 2.15e-49 | 171 |
MsaG017768 | AT4G36540.1 | 42.909 | 275 | 98 | 12 | 22 | 287 | 2 | 226 | 7.57e-49 | 168 |
MsaG017768 | AT3G23690.1 | 60.417 | 144 | 50 | 4 | 148 | 289 | 140 | 278 | 4.02e-47 | 166 |
MsaG017768 | AT5G48560.2 | 68.595 | 121 | 36 | 2 | 198 | 317 | 297 | 416 | 2.00e-46 | 166 |
MsaG017768 | AT5G48560.1 | 68.595 | 121 | 36 | 2 | 198 | 317 | 297 | 416 | 3.66e-46 | 166 |
MsaG017768 | AT1G26260.3 | 57.823 | 147 | 49 | 1 | 143 | 289 | 126 | 259 | 6.45e-46 | 161 |
MsaG017768 | AT1G26260.5 | 57.823 | 147 | 49 | 1 | 143 | 289 | 155 | 288 | 1.19e-45 | 162 |
MsaG017768 | AT1G26260.4 | 57.823 | 147 | 49 | 1 | 143 | 289 | 177 | 310 | 2.43e-45 | 161 |
MsaG017768 | AT1G26260.1 | 57.823 | 147 | 49 | 1 | 143 | 289 | 177 | 310 | 2.43e-45 | 161 |
MsaG017768 | AT1G26260.6 | 57.823 | 147 | 49 | 1 | 143 | 289 | 177 | 310 | 2.43e-45 | 161 |
MsaG017768 | AT1G26260.2 | 57.823 | 147 | 49 | 1 | 143 | 289 | 177 | 310 | 2.43e-45 | 161 |
MsaG017768 | AT5G50915.3 | 62.595 | 131 | 44 | 3 | 154 | 281 | 88 | 216 | 1.62e-44 | 155 |
MsaG017768 | AT5G50915.4 | 62.595 | 131 | 44 | 3 | 154 | 281 | 88 | 216 | 1.62e-44 | 155 |
MsaG017768 | AT5G50915.1 | 63.710 | 124 | 42 | 2 | 159 | 281 | 95 | 216 | 6.29e-44 | 154 |
MsaG017768 | AT5G50915.2 | 63.710 | 124 | 42 | 2 | 159 | 281 | 95 | 216 | 6.29e-44 | 154 |
MsaG017768 | AT1G59640.1 | 52.198 | 182 | 61 | 6 | 139 | 318 | 79 | 236 | 9.26e-43 | 151 |
MsaG017768 | AT3G57800.2 | 50.888 | 169 | 75 | 2 | 168 | 329 | 170 | 337 | 1.38e-42 | 154 |
MsaG017768 | AT1G59640.2 | 54.938 | 162 | 63 | 3 | 139 | 298 | 79 | 232 | 6.80e-42 | 151 |
MsaG017768 | AT2G42300.4 | 70.968 | 93 | 27 | 0 | 196 | 288 | 179 | 271 | 1.66e-41 | 148 |
MsaG017768 | AT2G42300.1 | 65.686 | 102 | 35 | 0 | 196 | 297 | 179 | 280 | 4.39e-40 | 145 |
MsaG017768 | AT5G62610.2 | 81.579 | 76 | 14 | 0 | 198 | 273 | 149 | 224 | 4.14e-37 | 136 |
MsaG017768 | AT5G62610.1 | 81.579 | 76 | 14 | 0 | 198 | 273 | 149 | 224 | 4.14e-37 | 136 |
MsaG017768 | AT1G73830.2 | 49.315 | 146 | 61 | 2 | 134 | 279 | 92 | 224 | 3.67e-35 | 130 |
MsaG017768 | AT1G73830.1 | 49.315 | 146 | 61 | 2 | 134 | 279 | 92 | 224 | 4.13e-35 | 130 |
MsaG017768 | AT1G18400.2 | 75.000 | 80 | 20 | 0 | 200 | 279 | 143 | 222 | 7.89e-35 | 129 |
MsaG017768 | AT1G18400.1 | 75.000 | 80 | 20 | 0 | 200 | 279 | 143 | 222 | 1.60e-34 | 129 |
MsaG017768 | AT3G57800.1 | 39.815 | 216 | 75 | 3 | 168 | 329 | 170 | 384 | 1.09e-33 | 130 |
MsaG017768 | AT1G25330.1 | 65.217 | 92 | 32 | 0 | 198 | 289 | 100 | 191 | 2.14e-33 | 125 |
MsaG017768 | AT5G58010.1 | 65.000 | 80 | 23 | 2 | 202 | 277 | 99 | 177 | 2.54e-23 | 99.4 |
MsaG017768 | AT2G24260.2 | 71.212 | 66 | 18 | 1 | 202 | 267 | 35 | 99 | 7.70e-23 | 97.1 |
MsaG017768 | AT4G30980.1 | 72.727 | 66 | 17 | 1 | 202 | 267 | 130 | 194 | 1.51e-22 | 97.4 |
MsaG017768 | AT4G30980.2 | 72.727 | 66 | 17 | 1 | 202 | 267 | 178 | 242 | 2.53e-22 | 97.8 |
MsaG017768 | AT2G24260.1 | 71.212 | 66 | 18 | 1 | 202 | 267 | 138 | 202 | 5.01e-22 | 96.7 |
MsaG017768 | AT2G42300.5 | 76.087 | 46 | 11 | 0 | 196 | 241 | 179 | 224 | 5.50e-18 | 82.8 |
MsaG017768 | AT2G42300.3 | 76.087 | 46 | 11 | 0 | 196 | 241 | 179 | 224 | 5.50e-18 | 82.8 |
MsaG017768 | AT2G42300.2 | 76.087 | 46 | 11 | 0 | 196 | 241 | 179 | 224 | 6.84e-18 | 82.8 |
MsaG017768 | AT2G20180.7 | 39.796 | 98 | 58 | 1 | 170 | 267 | 175 | 271 | 1.09e-15 | 79.0 |
MsaG017768 | AT2G20180.1 | 39.796 | 98 | 58 | 1 | 170 | 267 | 175 | 271 | 1.09e-15 | 79.0 |
MsaG017768 | AT2G20180.5 | 39.796 | 98 | 58 | 1 | 170 | 267 | 175 | 271 | 1.09e-15 | 79.0 |
MsaG017768 | AT2G42280.3 | 36.842 | 133 | 58 | 4 | 144 | 265 | 227 | 344 | 1.58e-15 | 77.8 |
MsaG017768 | AT2G42280.1 | 35.878 | 131 | 60 | 3 | 144 | 265 | 227 | 342 | 1.74e-15 | 77.8 |
MsaG017768 | AT2G20180.4 | 39.796 | 98 | 58 | 1 | 170 | 267 | 246 | 342 | 1.83e-15 | 78.6 |
MsaG017768 | AT2G20180.6 | 39.796 | 98 | 58 | 1 | 170 | 267 | 246 | 342 | 1.83e-15 | 78.6 |
MsaG017768 | AT2G20180.2 | 39.796 | 98 | 58 | 1 | 170 | 267 | 246 | 342 | 1.83e-15 | 78.6 |
MsaG017768 | AT2G20180.3 | 39.796 | 98 | 58 | 1 | 170 | 267 | 246 | 342 | 1.83e-15 | 78.6 |
MsaG017768 | AT1G51140.1 | 56.250 | 64 | 28 | 0 | 202 | 265 | 304 | 367 | 2.84e-14 | 74.3 |
MsaG017768 | AT4G09180.1 | 50.746 | 67 | 33 | 0 | 200 | 266 | 182 | 248 | 4.43e-14 | 72.4 |
MsaG017768 | AT1G03040.2 | 60.274 | 73 | 28 | 1 | 195 | 267 | 132 | 203 | 4.96e-14 | 72.8 |
MsaG017768 | AT4G28790.1 | 27.843 | 255 | 116 | 10 | 87 | 337 | 195 | 385 | 5.00e-14 | 73.6 |
MsaG017768 | AT2G20180.8 | 38.947 | 95 | 57 | 1 | 170 | 264 | 246 | 339 | 5.64e-14 | 73.2 |
MsaG017768 | AT1G03040.1 | 60.274 | 73 | 28 | 1 | 195 | 267 | 137 | 208 | 6.05e-14 | 72.4 |
MsaG017768 | AT1G09530.3 | 38.835 | 103 | 58 | 3 | 166 | 267 | 303 | 401 | 6.37e-14 | 73.9 |
MsaG017768 | AT1G09530.2 | 38.835 | 103 | 58 | 3 | 166 | 267 | 303 | 401 | 6.37e-14 | 73.9 |
MsaG017768 | AT1G09530.5 | 38.835 | 103 | 58 | 3 | 166 | 267 | 303 | 401 | 6.37e-14 | 73.9 |
MsaG017768 | AT1G09530.1 | 38.835 | 103 | 58 | 3 | 166 | 267 | 303 | 401 | 6.37e-14 | 73.9 |
MsaG017768 | AT1G09530.4 | 38.835 | 103 | 58 | 3 | 166 | 267 | 303 | 401 | 6.37e-14 | 73.9 |
MsaG017768 | AT1G09530.6 | 38.835 | 103 | 58 | 3 | 166 | 267 | 303 | 401 | 6.37e-14 | 73.9 |
MsaG017768 | AT1G35460.1 | 52.308 | 65 | 31 | 0 | 202 | 266 | 181 | 245 | 6.96e-14 | 71.6 |
MsaG017768 | AT4G28800.1 | 33.803 | 142 | 69 | 3 | 205 | 346 | 252 | 368 | 7.43e-14 | 73.6 |
MsaG017768 | AT4G02590.3 | 63.636 | 66 | 23 | 1 | 202 | 267 | 83 | 147 | 8.70e-14 | 71.2 |
MsaG017768 | AT4G28815.2 | 56.897 | 58 | 24 | 1 | 205 | 262 | 71 | 127 | 1.11e-13 | 70.5 |
MsaG017768 | AT1G03040.3 | 60.274 | 73 | 28 | 1 | 195 | 267 | 137 | 208 | 1.13e-13 | 72.0 |
MsaG017768 | AT4G02590.2 | 63.636 | 66 | 23 | 1 | 202 | 267 | 146 | 210 | 1.21e-13 | 71.6 |
MsaG017768 | AT4G02590.1 | 63.636 | 66 | 23 | 1 | 202 | 267 | 146 | 210 | 1.21e-13 | 71.6 |
MsaG017768 | AT4G28815.1 | 56.897 | 58 | 24 | 1 | 205 | 262 | 147 | 203 | 3.96e-13 | 70.1 |
MsaG017768 | AT4G28800.2 | 52.459 | 61 | 28 | 1 | 205 | 265 | 264 | 323 | 4.94e-12 | 67.8 |
MsaG017768 | AT2G46970.2 | 40.000 | 100 | 53 | 3 | 180 | 274 | 166 | 263 | 5.04e-12 | 67.4 |
MsaG017768 | AT2G46970.3 | 40.000 | 100 | 53 | 3 | 180 | 274 | 175 | 272 | 5.28e-12 | 67.4 |
MsaG017768 | AT2G46970.1 | 42.045 | 88 | 44 | 3 | 192 | 274 | 209 | 294 | 5.31e-12 | 67.4 |
MsaG017768 | AT4G33880.1 | 41.935 | 93 | 51 | 2 | 176 | 266 | 238 | 329 | 5.89e-12 | 67.0 |
MsaG017768 | AT4G28790.2 | 29.348 | 184 | 90 | 5 | 86 | 269 | 194 | 337 | 2.00e-11 | 65.5 |
MsaG017768 | AT4G00050.2 | 50.769 | 65 | 31 | 1 | 202 | 266 | 105 | 168 | 2.01e-11 | 65.1 |
MsaG017768 | AT2G43140.1 | 50.000 | 64 | 32 | 0 | 202 | 265 | 134 | 197 | 2.27e-11 | 63.5 |
MsaG017768 | AT2G43140.2 | 50.000 | 64 | 32 | 0 | 202 | 265 | 231 | 294 | 3.47e-11 | 64.3 |
MsaG017768 | AT4G00050.1 | 50.769 | 65 | 31 | 1 | 202 | 266 | 207 | 270 | 3.65e-11 | 64.7 |
MsaG017768 | AT2G14760.1 | 41.414 | 99 | 50 | 3 | 174 | 266 | 204 | 300 | 3.96e-11 | 64.3 |
MsaG017768 | AT4G00050.3 | 50.769 | 65 | 31 | 1 | 202 | 266 | 207 | 270 | 4.10e-11 | 64.7 |
MsaG017768 | AT4G36930.1 | 50.820 | 61 | 29 | 1 | 208 | 268 | 197 | 256 | 4.65e-11 | 64.3 |
MsaG017768 | AT1G27740.1 | 51.562 | 64 | 30 | 1 | 203 | 266 | 168 | 230 | 4.73e-11 | 63.2 |
Find 68 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCACAGCAATTTGTTCCTTA+TGG | 0.249421 | 3:+113083339 | MsaT017768.1:CDS |
AATTGAAGTTGTATAGGTTT+TGG | 0.253509 | 3:-113083602 | None:intergenic |
TCTCAATCTCAGTTATTTAC+AGG | 0.262036 | 3:+113083654 | MsaT017768.1:CDS |
CTCATTCACTCTTCAATTGC+TGG | 0.307759 | 3:+113082253 | MsaT017768.1:CDS |
AATTGAAGAGTGAATGAGTT+TGG | 0.318103 | 3:-113082248 | None:intergenic |
AAAGTTTGAGGAATGGATAT+AGG | 0.336253 | 3:-113083420 | None:intergenic |
GATCAAAATTGAAGTTGTAT+AGG | 0.339897 | 3:-113083608 | None:intergenic |
ATTGGGATTCCCGGTGATCT+TGG | 0.342453 | 3:-113082520 | None:intergenic |
AAGTTTGAGGAATGGATATA+GGG | 0.345771 | 3:-113083419 | None:intergenic |
ATTGAAGAGTGAATGAGTTT+GGG | 0.357408 | 3:-113082247 | None:intergenic |
TGGAATGAACCCTACAGATA+TGG | 0.359058 | 3:+113083374 | MsaT017768.1:CDS |
TTGAATACTACGACTAGTTC+CGG | 0.373329 | 3:+113081950 | MsaT017768.1:CDS |
CCAGGATGCAACAAAATTAC+AGG | 0.386637 | 3:+113082849 | MsaT017768.1:CDS |
AAAGACAAGAGGATCAAAAT+AGG | 0.388939 | 3:+113082480 | MsaT017768.1:CDS |
TATGTATGATGCAGGTTAGA+AGG | 0.402202 | 3:+113082784 | MsaT017768.1:intron |
TTGCTTGTTGTTTAGGCTGT+TGG | 0.409201 | 3:+113082444 | MsaT017768.1:intron |
CTTCTAAGTCCCATATCTGT+AGG | 0.410368 | 3:-113083384 | None:intergenic |
TCACCTTCCCATGTTGTAGA+AGG | 0.416145 | 3:-113083576 | None:intergenic |
AGCTATGGCTGTCGGTGGCT+TGG | 0.431984 | 3:-113082674 | None:intergenic |
ACTCTCAGTTGCTAGATTCC+CGG | 0.447140 | 3:-113081969 | None:intergenic |
CACGCACACACCTTGAGCTT+AGG | 0.457558 | 3:-113082331 | None:intergenic |
TGCTCGAACATGAATGTAAT+CGG | 0.461397 | 3:-113082643 | None:intergenic |
GAAGAATCAATAAAAGTTTG+AGG | 0.465715 | 3:-113083432 | None:intergenic |
AGAGTTGGCATTTGAAGAGT+TGG | 0.474811 | 3:-113082166 | None:intergenic |
TGAATACTACGACTAGTTCC+GGG | 0.477955 | 3:+113081951 | MsaT017768.1:CDS |
ATCAATAAAAGTTTGAGGAA+TGG | 0.483827 | 3:-113083427 | None:intergenic |
AACAAAATTACAGGAAAAGC+TGG | 0.485342 | 3:+113082858 | MsaT017768.1:CDS |
GAGTGAATGAGTTTGGGGTC+TGG | 0.491043 | 3:-113082241 | None:intergenic |
GGAATGAACCCTACAGATAT+GGG | 0.494720 | 3:+113083375 | MsaT017768.1:CDS |
ATGTATGATGCAGGTTAGAA+GGG | 0.501649 | 3:+113082785 | MsaT017768.1:intron |
CTACAGATATGGGACTTAGA+AGG | 0.505239 | 3:+113083385 | MsaT017768.1:CDS |
TTTGCATTTGCATCACAAGT+AGG | 0.509857 | 3:-113083252 | None:intergenic |
TTCTAAGTCCCATATCTGTA+GGG | 0.511108 | 3:-113083383 | None:intergenic |
TCATTCACTCTTCAATTGCT+GGG | 0.512372 | 3:+113082254 | MsaT017768.1:CDS |
TCAATATTGAAATCAAGCCT+TGG | 0.519925 | 3:-113083078 | None:intergenic |
CCAGCATCTAATCCACCATA+AGG | 0.520595 | 3:-113083354 | None:intergenic |
GAAGTAGTAACATCAAGAGT+TGG | 0.521259 | 3:-113082181 | None:intergenic |
AACAGTGTTTGAAAGACAAA+GGG | 0.521570 | 3:+113082006 | MsaT017768.1:CDS |
CAGCAATTTGTTCCTTATGG+TGG | 0.522613 | 3:+113083342 | MsaT017768.1:CDS |
TTACTCTTTCAGCTAAGCTA+TGG | 0.530789 | 3:-113082689 | None:intergenic |
AGAAGATACTTCAAACTCAA+AGG | 0.553682 | 3:+113082590 | MsaT017768.1:CDS |
TTCAGCTAAGCTATGGCTGT+CGG | 0.556309 | 3:-113082682 | None:intergenic |
TAACAGTGTTTGAAAGACAA+AGG | 0.558772 | 3:+113082005 | MsaT017768.1:CDS |
CCTTATGGTGGATTAGATGC+TGG | 0.561668 | 3:+113083354 | MsaT017768.1:CDS |
TATCTGCAAGATTTAGTACC+AGG | 0.562856 | 3:+113082831 | MsaT017768.1:CDS |
AATTATACCTTCTACAACAT+GGG | 0.569534 | 3:+113083569 | MsaT017768.1:CDS |
GACGGCGAATCCAAGATCAC+CGG | 0.574848 | 3:+113082510 | MsaT017768.1:CDS |
AGTTTGGGGTCTGGAAGAAG+AGG | 0.575334 | 3:-113082232 | None:intergenic |
TCATCATAATCCTAAGCTCA+AGG | 0.584084 | 3:+113082321 | MsaT017768.1:CDS |
GTAAATAACTGAGATTGAGA+AGG | 0.584711 | 3:-113083651 | None:intergenic |
TAAATCAGCAGCAAGTGAAG+AGG | 0.586756 | 3:-113082140 | None:intergenic |
TTCAAACACTGTTATGTCAG+AGG | 0.587410 | 3:-113081996 | None:intergenic |
GGTGAATTGAACTGAAGATA+AGG | 0.590017 | 3:-113083318 | None:intergenic |
AAATTATACCTTCTACAACA+TGG | 0.591829 | 3:+113083568 | MsaT017768.1:CDS |
TTGGGGTCTGGAAGAAGAGG+TGG | 0.593623 | 3:-113082229 | None:intergenic |
AGCTAAGCTATGGCTGTCGG+TGG | 0.605688 | 3:-113082679 | None:intergenic |
AATTAGCTACTGTTAATCCA+AGG | 0.613412 | 3:+113083061 | MsaT017768.1:CDS |
ATACCTTCTACAACATGGGA+AGG | 0.615789 | 3:+113083573 | MsaT017768.1:CDS |
ACGGCGAATCCAAGATCACC+GGG | 0.628691 | 3:+113082511 | MsaT017768.1:CDS |
ATCAAAATAGGTGCTGAGGA+CGG | 0.629527 | 3:+113082492 | MsaT017768.1:CDS |
TTGAAGAGTGAATGAGTTTG+GGG | 0.630480 | 3:-113082246 | None:intergenic |
GACAAAGGGAAAGAATGAAG+TGG | 0.633675 | 3:+113082020 | MsaT017768.1:CDS |
GAGGATCAAAATAGGTGCTG+AGG | 0.635802 | 3:+113082488 | MsaT017768.1:CDS |
AGTTTGAGGAATGGATATAG+GGG | 0.638076 | 3:-113083418 | None:intergenic |
AAGTTGAGAACAAAGACAAG+AGG | 0.638388 | 3:+113082469 | MsaT017768.1:CDS |
ATTCATGTTCGAGCACGTCG+TGG | 0.642577 | 3:+113082651 | MsaT017768.1:CDS |
TTGAGCTTAGGATTATGATG+AGG | 0.647091 | 3:-113082319 | None:intergenic |
CCATAAGGAACAAATTGCTG+TGG | 0.664587 | 3:-113083339 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 113081938 | 113085186 | 113081938 | ID=MsaG017768 |
Chr3 | mRNA | 113081938 | 113085186 | 113081938 | ID=MsaT017768.1;Parent=MsaG017768 |
Chr3 | exon | 113081938 | 113082342 | 113081938 | ID=MsaT017768.1.exon1;Parent=MsaT017768.1 |
Chr3 | CDS | 113081938 | 113082342 | 113081938 | ID=cds.MsaT017768.1;Parent=MsaT017768.1 |
Chr3 | exon | 113082459 | 113082707 | 113082459 | ID=MsaT017768.1.exon2;Parent=MsaT017768.1 |
Chr3 | CDS | 113082459 | 113082707 | 113082459 | ID=cds.MsaT017768.1;Parent=MsaT017768.1 |
Chr3 | exon | 113082798 | 113082932 | 113082798 | ID=MsaT017768.1.exon3;Parent=MsaT017768.1 |
Chr3 | CDS | 113082798 | 113082932 | 113082798 | ID=cds.MsaT017768.1;Parent=MsaT017768.1 |
Chr3 | exon | 113083048 | 113083119 | 113083048 | ID=MsaT017768.1.exon4;Parent=MsaT017768.1 |
Chr3 | CDS | 113083048 | 113083119 | 113083048 | ID=cds.MsaT017768.1;Parent=MsaT017768.1 |
Chr3 | exon | 113083246 | 113083464 | 113083246 | ID=MsaT017768.1.exon5;Parent=MsaT017768.1 |
Chr3 | CDS | 113083246 | 113083464 | 113083246 | ID=cds.MsaT017768.1;Parent=MsaT017768.1 |
Chr3 | exon | 113083567 | 113083675 | 113083567 | ID=MsaT017768.1.exon6;Parent=MsaT017768.1 |
Chr3 | CDS | 113083567 | 113083675 | 113083567 | ID=cds.MsaT017768.1;Parent=MsaT017768.1 |
Chr3 | exon | 113085149 | 113085186 | 113085149 | ID=MsaT017768.1.exon7;Parent=MsaT017768.1 |
Chr3 | CDS | 113085149 | 113085186 | 113085149 | ID=cds.MsaT017768.1;Parent=MsaT017768.1 |
Gene Sequence |
Protein sequence |