AlfalfaGEDB | MsaG019029

M. sativa ssp. caerulea / MsaG019029

KEGG: K11423
GO: GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009791 GO:0009987 GO:0010224 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564
PFAM: PF00856.31

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019029	XP_039685836.1	94.828	116	6	0	84	199	101	216	6.80e-70	232

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019029	sp\|Q84WW6\|ASHH1_ARATH	78.448	116	25	0	84	199	121	236	1.04e-57	193

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019029	tr\|A0A396JTI7\|A0A396JTI7_MEDTR	94.828	116	6	0	84	199	116	231	6.39e-70	231

TFs/TRs:

Gene ID	Type	Classification
MsaG019029	TR	SET

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019029	MtrunA17_Chr1g0201311	94.828	116	6	0	84	199	116	231	1.23e-73	231
MsaG019029	MtrunA17_Chr1g0201621	93.966	116	7	0	84	199	116	231	8.23e-73	229
MsaG019029	MtrunA17_Chr7g0220311	97.143	70	2	0	1	70	2481	2550	4.63e-39	144
MsaG019029	MtrunA17_Chr3g0125251	38.971	136	78	2	84	218	1356	1487	2.24e-24	101
MsaG019029	MtrunA17_Chr2g0305371	44.792	96	52	1	101	196	382	476	2.63e-21	92.4
MsaG019029	MtrunA17_Chr6g0477001	39.130	138	75	3	84	213	144	280	1.57e-20	89.0
MsaG019029	MtrunA17_Chr7g0235081	47.126	87	46	0	84	170	226	312	1.58e-15	74.7
MsaG019029	MtrunA17_Chr2g0297191	33.654	104	68	1	84	187	1064	1166	4.07e-14	71.6
MsaG019029	MtrunA17_Chr5g0401921	44.318	88	47	1	84	171	746	831	3.13e-13	68.9
MsaG019029	MtrunA17_Chr1g0194631	43.678	87	47	1	84	170	642	726	4.62e-13	68.6
MsaG019029	MtrunA17_Chr1g0149611	33.835	133	76	2	38	170	365	485	5.06e-13	68.2
MsaG019029	MtrunA17_Chr8g0347071	37.500	104	61	3	91	191	846	948	4.02e-12	65.5
MsaG019029	MtrunA17_Chr3g0126701	37.500	104	61	3	91	191	960	1062	4.43e-12	65.5
MsaG019029	MtrunA17_Chr1g0147121	39.560	91	52	2	104	191	943	1033	6.76e-12	65.1
MsaG019029	MtrunA17_Chr1g0149581	46.875	64	34	0	107	170	1580	1643	7.09e-12	65.1
MsaG019029	MtrunA17_Chr7g0221611	46.875	64	34	0	107	170	961	1024	3.10e-11	63.2
MsaG019029	MtrunA17_Chr7g0275611	38.318	107	56	4	91	191	861	963	6.90e-11	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019029	AT1G76710.2	78.448	116	25	0	84	199	121	236	1.05e-58	193
MsaG019029	AT1G76710.1	78.448	116	25	0	84	199	121	236	1.05e-58	193
MsaG019029	AT1G76710.4	78.448	116	25	0	84	199	121	236	1.76e-58	193
MsaG019029	AT1G76710.3	78.448	116	25	0	84	199	121	236	2.58e-58	193
MsaG019029	AT1G77300.1	44.545	110	60	1	84	192	1058	1167	1.53e-24	102
MsaG019029	AT1G77300.2	44.545	110	60	1	84	192	1058	1167	1.58e-24	102
MsaG019029	AT3G02260.1	67.606	71	23	0	1	71	2486	2556	2.44e-23	99.4
MsaG019029	AT3G02260.2	67.143	70	23	0	1	70	2469	2538	1.45e-22	97.1
MsaG019029	AT3G02260.3	67.143	70	23	0	1	70	2470	2539	1.45e-22	97.1
MsaG019029	AT3G02260.4	67.143	70	23	0	1	70	2479	2548	1.45e-22	97.1
MsaG019029	AT4G30860.1	43.478	115	60	3	84	196	358	469	8.79e-22	94.0
MsaG019029	AT2G44150.1	36.806	144	86	3	84	225	148	288	2.84e-18	83.2
MsaG019029	AT3G59960.3	44.000	100	51	2	95	194	158	252	1.34e-17	80.5
MsaG019029	AT3G59960.2	44.000	100	51	2	95	194	158	252	1.34e-17	80.5
MsaG019029	AT3G59960.4	44.000	100	51	2	95	194	158	252	1.34e-17	80.5
MsaG019029	AT3G59960.1	44.000	100	51	2	95	194	158	252	2.31e-17	80.1
MsaG019029	AT5G42400.7	36.538	104	65	1	84	187	1281	1383	4.68e-16	77.8
MsaG019029	AT5G42400.2	36.538	104	65	1	84	187	1281	1383	4.68e-16	77.8
MsaG019029	AT5G42400.8	36.538	104	65	1	84	187	1281	1383	4.68e-16	77.8
MsaG019029	AT5G42400.5	36.538	104	65	1	84	187	1281	1383	4.68e-16	77.8
MsaG019029	AT5G42400.4	36.538	104	65	1	84	187	1281	1383	4.68e-16	77.8
MsaG019029	AT5G42400.1	36.538	104	65	1	84	187	1281	1383	4.68e-16	77.8
MsaG019029	AT5G42400.3	36.538	104	65	1	84	187	1281	1383	4.68e-16	77.8
MsaG019029	AT5G42400.6	36.538	104	65	1	84	187	1281	1383	4.68e-16	77.8
MsaG019029	AT2G23380.1	45.455	88	46	1	84	171	784	869	4.61e-14	71.6
MsaG019029	AT2G23380.2	45.455	88	46	1	84	171	557	642	5.87e-14	71.2
MsaG019029	AT4G27910.1	38.462	104	60	3	91	191	924	1026	2.85e-12	66.6
MsaG019029	AT4G02020.1	42.529	87	48	1	84	170	739	823	2.93e-12	66.6
MsaG019029	AT3G61740.1	39.623	106	57	4	91	191	914	1017	8.40e-12	65.1
MsaG019029	AT3G61740.2	39.623	106	57	4	91	191	878	981	9.16e-12	65.1
MsaG019029	AT1G05830.2	38.636	88	53	1	84	170	951	1038	1.84e-11	64.3
MsaG019029	AT1G05830.4	38.636	88	53	1	84	170	951	1038	1.84e-11	64.3
MsaG019029	AT1G05830.1	38.636	88	53	1	84	170	951	1038	1.84e-11	64.3
MsaG019029	AT1G05830.3	38.636	88	53	1	84	170	951	1038	1.84e-11	64.3
MsaG019029	AT2G31650.1	45.588	68	37	0	107	174	954	1021	3.55e-11	63.2

Find 38 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAAGATTTATAAACCATTCT+TGG	0.218332	4:-22044566	MsaT019029.1:intron
GACCTTGAGTTTCATAAGTA+TGG	0.226901	4:+22044739	None:intergenic
AGATATAACAATGTTGTTCA+TGG	0.318271	4:+22045840	None:intergenic
GCACTGGAAGATATTCCTAT+TGG	0.334570	4:-22044345	MsaT019029.1:CDS
GCCCTCCATGTAAAAGATTC+AGG	0.335082	4:-22045781	MsaT019029.1:CDS
CAAATTGTGAGACAAGAAAA+TGG	0.341946	4:-22044401	MsaT019029.1:CDS
TTGAAGTAGTTTACCAAGAA+TGG	0.363419	4:+22044553	None:intergenic
TTGTTCATGGTTTGAGTGTC+GGG	0.416109	4:+22045853	None:intergenic
CTCAAATGTTCTGAATTCCT+TGG	0.421542	4:-22044252	MsaT019029.1:CDS
AGACCCACTAATAGCTTGAA+TGG	0.421574	4:-22044073	MsaT019029.1:CDS
TTCTTCAGTAATACAACAGC+AGG	0.454164	4:+22045742	None:intergenic
TATTCCTATTGGAACTGAAC+TGG	0.465129	4:-22044334	MsaT019029.1:CDS
TATGCCAGTTCAGTTCCAAT+AGG	0.481653	4:+22044330	None:intergenic
TTATTGTTATGCTGAATGCT+TGG	0.483188	4:-22045803	MsaT019029.1:CDS
ACCTTGAGTTTCATAAGTAT+GGG	0.487157	4:+22044740	None:intergenic
TCTATCGATGCAACTAGAAA+AGG	0.490560	4:-22044597	MsaT019029.1:CDS
GTTGTTCATGGTTTGAGTGT+CGG	0.491939	4:+22045852	None:intergenic
GAGTCCATTCAAGCTATTAG+TGG	0.503625	4:+22044069	None:intergenic
ATCATGCCCATGCATTGAAA+AGG	0.512630	4:+22044036	None:intergenic
ATCATGCCCATGCATTGAAA+AGG	0.512630	4:+22044124	None:intergenic
AAGAGTTGGAATATTTGCAC+TGG	0.522066	4:-22044361	MsaT019029.1:CDS
GAGTTGTGTCTTCAGAGGAA+TGG	0.522151	4:-22044800	MsaT019029.1:CDS
AAGCTGTTCAAACTGCTAGC+AGG	0.527660	4:-22045699	MsaT019029.1:intron
TGAATGGTTTGGAGGTGCAA+AGG	0.527707	4:-22044295	MsaT019029.1:CDS
AATGGTTTATAAATCTTGCA+AGG	0.529739	4:+22044571	None:intergenic
ATAAGTATGGGATCTACACT+TGG	0.529929	4:+22044752	None:intergenic
ACAAGAAAATGGAATGTCAT+GGG	0.544715	4:-22044390	MsaT019029.1:CDS
TTCCTTGGAACAAAATCTCG+TGG	0.560409	4:-22044237	MsaT019029.1:CDS
GACAAGAAAATGGAATGTCA+TGG	0.568296	4:-22044391	MsaT019029.1:CDS
ATGGGCATGATGTTGACTGC+TGG	0.586934	4:-22044024	MsaT019029.1:CDS
CTAATAGCTTGAATGGACTC+AGG	0.596311	4:-22044066	MsaT019029.1:CDS
AACATTTGAGCGCACTACGC+AGG	0.597700	4:+22044265	None:intergenic
AGTCCATTCAAGCTATTAGT+GGG	0.608535	4:+22044070	None:intergenic
TCCCATACTTATGAAACTCA+AGG	0.623281	4:-22044741	MsaT019029.1:intron
CTTGAATGGACTCAGGTCTG+AGG	0.627318	4:-22044059	MsaT019029.1:CDS
GACAAGAGTTGTGTCTTCAG+AGG	0.640474	4:-22044805	MsaT019029.1:CDS
CAAGAAAATGGAATGTCATG+GGG	0.642373	4:-22044389	MsaT019029.1:CDS
AAGAAAATGGAATGTCATGG+GGG	0.698806	4:-22044388	MsaT019029.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	22044006	22045911	22044006	ID=MsaG019029
Chr4	mRNA	22044006	22045911	22044006	ID=MsaT019029.1;Parent=MsaG019029
Chr4	exon	22044006	22044146	22044006	ID=MsaT019029.1.exon5;Parent=MsaT019029.1
Chr4	CDS	22044006	22044146	22044006	ID=cds.MsaT019029.1;Parent=MsaT019029.1
Chr4	exon	22044230	22044428	22044230	ID=MsaT019029.1.exon4;Parent=MsaT019029.1
Chr4	CDS	22044230	22044428	22044230	ID=cds.MsaT019029.1;Parent=MsaT019029.1
Chr4	exon	22044567	22044660	22044567	ID=MsaT019029.1.exon3;Parent=MsaT019029.1
Chr4	CDS	22044567	22044660	22044567	ID=cds.MsaT019029.1;Parent=MsaT019029.1
Chr4	exon	22044742	22044833	22044742	ID=MsaT019029.1.exon2;Parent=MsaT019029.1
Chr4	CDS	22044742	22044833	22044742	ID=cds.MsaT019029.1;Parent=MsaT019029.1
Chr4	exon	22045700	22045911	22045700	ID=MsaT019029.1.exon1;Parent=MsaT019029.1
Chr4	CDS	22045700	22045911	22045700	ID=cds.MsaT019029.1;Parent=MsaT019029.1

Gene Sequence

>MsaT019029.1

ATGCAAGTTTTATGGGGAATTTTGGACTTTGAGCAGCCCGACACTCAAACCATGAACAACATTGTTATATCTACAGTTGAACTTATTTATTGTTATGCTGAATGCTTGGCCCTCCATGTAAAAGATTCAGGAGTGCACTGTGTAGCACCTGCTGTTGTATTACTGAAGAAACTTCTTTTTTCGTCTGATGAAGCTGTTCAAACTGCTAGCAGGAATACGACAAGAGTTGTGTCTTCAGAGGAATGGAAAGAAGTAATATCATGCAAAGAAGCCAAGTGTAGATCCCATACTTATGAAACTCAAGGTCTTAAGGATGCATTTATCATTTCTCTTAATGCGTCTGAATCTATCGATGCAACTAGAAAAGGAAGCCTTGCAAGATTTATAAACCATTCTTGTCAACCAAATTGTGAGACAAGAAAATGGAATGTCATGGGGGAAATAAGAGTTGGAATATTTGCACTGGAAGATATTCCTATTGGAACTGAACTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTATTTGCCTGCGTAGTGCGCTCAAATGTTCTGAATTCCTTGGAACAAAATCTCGTGGTTTTCAACCTTTTCAATGCATGGGCATGATGTTGACTGTTGTAGACCATGAGTTTTTAAGACCCACTAATAGCTTGAATGGACTCAGGTCTGAGGCCTTTTCAATGCATGGGCATGATGTTGACTGCTGGAAATTGAATGATACTTGA

Protein sequence

>MsaT019029.1

MQVLWGILDFEQPDTQTMNNIVISTVELIYCYAECLALHVKDSGVHCVAPAVVLLKKLLFSSDEAVQTASRNTTRVVSSEEWKEVISCKEAKCRSHTYETQGLKDAFIISLNASESIDATRKGSLARFINHSCQPNCETRKWNVMGEIRVGIFALEDIPIGTELAYDYNFEWFGGAKVICLRSALKCSEFLGTKSRGFQPFQCMGMMLTVVDHEFLRPTNSLNGLRSEAFSMHGHDVDCWKLNDT*