Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG019133 | XP_013455102.1 | 94.896 | 627 | 29 | 3 | 1 | 626 | 1 | 625 | 0.0 | 1108 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG019133 | sp|O81316|SCL6_ARATH | 42.496 | 633 | 276 | 18 | 4 | 626 | 1 | 555 | 1.08e-133 | 405 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG019133 | tr|A0A072UTD0|A0A072UTD0_MEDTR | 94.896 | 627 | 29 | 3 | 1 | 626 | 1 | 625 | 0.0 | 1108 |
Gene ID | Type | Classification |
---|---|---|
MsaG019133 | TF | GRAS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG010651 | MsaG019133 | 0.813089 | 5.258007e-51 | 9.688087e-49 |
MsaG019133 | MsaG019141 | 0.902266 | 2.685737e-78 | 1.570156e-74 |
MsaG019133 | MsaG023706 | 0.808788 | 4.444695e-50 | 7.371598e-48 |
MsaG019133 | MsaG023718 | 0.802006 | 1.155517e-48 | 1.634819e-46 |
MsaG019133 | MsaG024053 | 0.806932 | 1.098144e-49 | 1.742027e-47 |
MsaG019133 | MsaG027549 | 0.804424 | 3.669373e-49 | 5.489156e-47 |
MsaG019133 | MsaG033214 | 0.807750 | 7.377223e-50 | 1.193358e-47 |
MsaG019133 | MsaG041072 | 0.820135 | 1.409693e-52 | 3.111661e-50 |
MsaG019133 | MsaG041299 | 0.804480 | 3.572508e-49 | 5.351132e-47 |
MsaG019133 | MsaG002070 | 0.807886 | 6.906264e-50 | 1.120847e-47 |
MsaG019133 | MsaG018696 | 0.802196 | 1.056234e-48 | 1.500897e-46 |
MsaG019133 | MsaG032252 | 0.804890 | 2.936185e-49 | 4.440108e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG019133 | MtrunA17_Chr4g0012071 | 95.140 | 535 | 23 | 3 | 93 | 626 | 20 | 552 | 0.0 | 1026 |
MsaG019133 | MtrunA17_Chr7g0230771 | 61.136 | 440 | 153 | 6 | 196 | 626 | 302 | 732 | 4.39e-170 | 502 |
MsaG019133 | MtrunA17_Chr7g0230771 | 35.437 | 206 | 102 | 9 | 1 | 190 | 4 | 194 | 1.21e-12 | 71.2 |
MsaG019133 | MtrunA17_Chr7g0230731 | 60.227 | 440 | 157 | 6 | 196 | 626 | 299 | 729 | 7.22e-167 | 494 |
MsaG019133 | MtrunA17_Chr8g0373561 | 34.054 | 370 | 226 | 10 | 268 | 626 | 180 | 542 | 6.54e-54 | 192 |
MsaG019133 | MtrunA17_Chr2g0306641 | 27.053 | 414 | 257 | 12 | 232 | 626 | 101 | 488 | 6.42e-33 | 132 |
MsaG019133 | MtrunA17_Chr8g0376381 | 25.967 | 362 | 252 | 6 | 271 | 625 | 170 | 522 | 1.17e-32 | 132 |
MsaG019133 | MtrunA17_Chr4g0038761 | 28.150 | 373 | 231 | 11 | 273 | 625 | 87 | 442 | 4.44e-32 | 129 |
MsaG019133 | MtrunA17_Chr7g0224271 | 27.842 | 431 | 260 | 15 | 226 | 626 | 265 | 674 | 5.84e-32 | 131 |
MsaG019133 | MtrunA17_Chr5g0445331 | 27.321 | 377 | 246 | 10 | 271 | 625 | 162 | 532 | 8.06e-32 | 130 |
MsaG019133 | MtrunA17_Chr4g0039661 | 29.897 | 388 | 221 | 15 | 267 | 625 | 190 | 555 | 4.29e-31 | 128 |
MsaG019133 | MtrunA17_Chr3g0101141 | 26.042 | 384 | 242 | 12 | 269 | 625 | 174 | 542 | 1.24e-30 | 126 |
MsaG019133 | MtrunA17_Chr3g0110971 | 25.729 | 377 | 249 | 8 | 271 | 625 | 220 | 587 | 7.32e-30 | 124 |
MsaG019133 | MtrunA17_Chr5g0447691 | 24.595 | 370 | 261 | 8 | 271 | 625 | 178 | 544 | 4.32e-29 | 122 |
MsaG019133 | MtrunA17_Chr7g0245601 | 26.558 | 369 | 234 | 8 | 275 | 625 | 443 | 792 | 1.10e-27 | 119 |
MsaG019133 | MtrunA17_Chr2g0290241 | 25.066 | 379 | 255 | 11 | 269 | 626 | 56 | 426 | 1.34e-26 | 112 |
MsaG019133 | MtrunA17_Chr2g0319091 | 24.105 | 419 | 267 | 12 | 236 | 624 | 181 | 578 | 5.24e-26 | 112 |
MsaG019133 | MtrunA17_Chr4g0057291 | 25.789 | 380 | 245 | 11 | 271 | 624 | 293 | 661 | 5.41e-25 | 110 |
MsaG019133 | MtrunA17_Chr1g0159461 | 26.720 | 378 | 243 | 12 | 271 | 625 | 226 | 592 | 1.37e-24 | 108 |
MsaG019133 | MtrunA17_Chr3g0125811 | 25.806 | 372 | 254 | 8 | 271 | 625 | 204 | 570 | 2.11e-24 | 107 |
MsaG019133 | MtrunA17_Chr1g0183641 | 26.075 | 372 | 242 | 11 | 271 | 626 | 124 | 478 | 3.39e-24 | 106 |
MsaG019133 | MtrunA17_Chr4g0076091 | 24.538 | 379 | 253 | 10 | 271 | 626 | 176 | 544 | 6.67e-24 | 105 |
MsaG019133 | MtrunA17_Chr5g0403741 | 27.778 | 234 | 151 | 8 | 402 | 626 | 51 | 275 | 9.41e-22 | 95.5 |
MsaG019133 | MtrunA17_Chr5g0424131 | 25.245 | 408 | 264 | 15 | 251 | 626 | 102 | 500 | 1.66e-21 | 98.6 |
MsaG019133 | MtrunA17_Chr7g0270031 | 23.776 | 429 | 291 | 10 | 229 | 625 | 130 | 554 | 4.19e-21 | 97.4 |
MsaG019133 | MtrunA17_Chr3g0114841 | 27.907 | 301 | 200 | 10 | 338 | 626 | 206 | 501 | 4.59e-21 | 97.1 |
MsaG019133 | MtrunA17_Chr4g0057891 | 24.937 | 397 | 260 | 13 | 257 | 626 | 136 | 521 | 7.67e-21 | 96.3 |
MsaG019133 | MtrunA17_Chr8g0383981 | 27.225 | 382 | 238 | 16 | 264 | 624 | 133 | 495 | 8.24e-20 | 93.2 |
MsaG019133 | MtrunA17_Chr2g0328431 | 22.169 | 415 | 288 | 11 | 233 | 624 | 251 | 653 | 1.63e-18 | 89.7 |
MsaG019133 | MtrunA17_Chr2g0328381 | 24.533 | 375 | 252 | 12 | 271 | 624 | 276 | 640 | 2.11e-18 | 89.4 |
MsaG019133 | MtrunA17_Chr2g0294471 | 25.459 | 381 | 259 | 12 | 266 | 625 | 200 | 576 | 2.49e-18 | 89.0 |
MsaG019133 | MtrunA17_Chr2g0294461 | 25.260 | 384 | 259 | 12 | 266 | 625 | 206 | 585 | 2.33e-17 | 85.9 |
MsaG019133 | MtrunA17_Chr2g0328341 | 25.091 | 275 | 184 | 7 | 271 | 532 | 273 | 538 | 7.81e-17 | 84.3 |
MsaG019133 | MtrunA17_Chr7g0238891 | 21.130 | 407 | 277 | 10 | 249 | 625 | 348 | 740 | 1.95e-16 | 83.2 |
MsaG019133 | MtrunA17_Chr2g0328391 | 24.149 | 323 | 216 | 8 | 275 | 575 | 304 | 619 | 2.10e-16 | 83.2 |
MsaG019133 | MtrunA17_Chr2g0328411 | 21.684 | 392 | 275 | 10 | 252 | 624 | 275 | 653 | 3.47e-16 | 82.4 |
MsaG019133 | MtrunA17_Chr5g0401131 | 21.149 | 383 | 267 | 9 | 271 | 625 | 115 | 490 | 7.91e-16 | 80.5 |
MsaG019133 | MtrunA17_Chr8g0357601 | 22.166 | 397 | 266 | 10 | 259 | 625 | 169 | 552 | 4.15e-15 | 78.6 |
MsaG019133 | MtrunA17_Chr4g0031741 | 26.286 | 175 | 123 | 2 | 271 | 441 | 285 | 457 | 1.70e-14 | 77.0 |
MsaG019133 | MtrunA17_Chr4g0031711 | 24.611 | 321 | 214 | 8 | 228 | 530 | 323 | 633 | 5.51e-14 | 75.5 |
MsaG019133 | MtrunA17_Chr2g0328361 | 25.087 | 287 | 187 | 11 | 271 | 542 | 275 | 548 | 5.55e-14 | 75.1 |
MsaG019133 | MtrunA17_Chr2g0328371 | 26.108 | 203 | 135 | 5 | 338 | 532 | 2 | 197 | 1.09e-13 | 71.6 |
MsaG019133 | MtrunA17_Chr2g0329591 | 21.951 | 369 | 246 | 10 | 289 | 625 | 93 | 451 | 2.04e-13 | 72.8 |
MsaG019133 | MtrunA17_Chr4g0031701 | 23.853 | 327 | 222 | 9 | 271 | 575 | 255 | 576 | 3.18e-13 | 72.8 |
MsaG019133 | MtrunA17_Chr4g0031731 | 25.090 | 279 | 183 | 8 | 271 | 530 | 255 | 526 | 5.30e-13 | 72.0 |
MsaG019133 | MtrunA17_Chr2g0328401 | 22.523 | 222 | 154 | 6 | 230 | 441 | 250 | 463 | 1.55e-12 | 70.5 |
MsaG019133 | MtrunA17_Chr5g0396491 | 27.746 | 173 | 117 | 3 | 271 | 439 | 57 | 225 | 2.16e-11 | 66.6 |
MsaG019133 | MtrunA17_Chr4g0038851 | 31.720 | 186 | 111 | 6 | 271 | 447 | 49 | 227 | 3.24e-11 | 65.9 |
MsaG019133 | MtrunA17_Chr4g0031721 | 18.182 | 418 | 306 | 11 | 235 | 624 | 274 | 683 | 3.69e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG019133 | AT4G00150.1 | 42.496 | 633 | 276 | 18 | 4 | 626 | 1 | 555 | 1.10e-134 | 405 |
MsaG019133 | AT2G45160.1 | 39.732 | 672 | 324 | 24 | 4 | 626 | 1 | 640 | 1.28e-112 | 351 |
MsaG019133 | AT3G60630.1 | 39.637 | 661 | 323 | 25 | 4 | 626 | 1 | 623 | 9.69e-110 | 343 |
MsaG019133 | AT4G36710.1 | 32.713 | 376 | 220 | 11 | 269 | 625 | 124 | 485 | 1.73e-52 | 188 |
MsaG019133 | AT2G04890.1 | 27.957 | 372 | 239 | 9 | 271 | 625 | 54 | 413 | 8.49e-37 | 142 |
MsaG019133 | AT5G66770.1 | 29.275 | 386 | 248 | 13 | 257 | 625 | 207 | 584 | 4.98e-36 | 143 |
MsaG019133 | AT5G17490.1 | 28.533 | 368 | 238 | 10 | 271 | 625 | 161 | 516 | 6.68e-31 | 127 |
MsaG019133 | AT3G50650.1 | 27.907 | 387 | 238 | 12 | 263 | 625 | 173 | 542 | 5.24e-30 | 125 |
MsaG019133 | AT2G01570.1 | 26.630 | 368 | 246 | 9 | 271 | 625 | 225 | 581 | 1.26e-29 | 124 |
MsaG019133 | AT3G54220.1 | 26.923 | 364 | 240 | 7 | 275 | 624 | 298 | 649 | 2.74e-29 | 123 |
MsaG019133 | AT3G03450.1 | 25.137 | 366 | 259 | 6 | 271 | 625 | 184 | 545 | 1.50e-28 | 120 |
MsaG019133 | AT5G48150.1 | 23.607 | 377 | 271 | 8 | 264 | 625 | 116 | 490 | 2.37e-28 | 119 |
MsaG019133 | AT5G48150.4 | 23.607 | 377 | 271 | 8 | 264 | 625 | 116 | 490 | 2.37e-28 | 119 |
MsaG019133 | AT5G48150.2 | 23.607 | 377 | 271 | 8 | 264 | 625 | 116 | 490 | 2.37e-28 | 119 |
MsaG019133 | AT5G48150.3 | 23.607 | 377 | 271 | 8 | 264 | 625 | 116 | 490 | 2.37e-28 | 119 |
MsaG019133 | AT1G21450.1 | 25.405 | 370 | 259 | 7 | 271 | 625 | 226 | 593 | 3.06e-28 | 120 |
MsaG019133 | AT4G17230.1 | 26.509 | 381 | 254 | 10 | 264 | 625 | 152 | 525 | 4.41e-28 | 119 |
MsaG019133 | AT4G17230.2 | 26.509 | 381 | 254 | 10 | 264 | 625 | 152 | 525 | 4.41e-28 | 119 |
MsaG019133 | AT1G66350.1 | 25.272 | 368 | 247 | 10 | 271 | 626 | 156 | 507 | 4.82e-28 | 119 |
MsaG019133 | AT1G14920.1 | 25.275 | 364 | 256 | 8 | 271 | 625 | 173 | 529 | 2.31e-27 | 117 |
MsaG019133 | AT1G50600.3 | 23.389 | 419 | 264 | 11 | 237 | 625 | 135 | 526 | 3.53e-27 | 116 |
MsaG019133 | AT1G50600.2 | 23.301 | 412 | 273 | 10 | 237 | 625 | 210 | 601 | 1.16e-26 | 115 |
MsaG019133 | AT1G50600.1 | 23.301 | 412 | 273 | 10 | 237 | 625 | 206 | 597 | 1.24e-26 | 115 |
MsaG019133 | AT5G41920.1 | 25.401 | 374 | 243 | 9 | 271 | 625 | 44 | 400 | 2.60e-26 | 112 |
MsaG019133 | AT1G63100.2 | 25.587 | 383 | 239 | 13 | 276 | 624 | 283 | 653 | 2.22e-21 | 99.4 |
MsaG019133 | AT1G63100.1 | 25.587 | 383 | 239 | 13 | 276 | 624 | 258 | 628 | 2.40e-21 | 99.0 |
MsaG019133 | AT1G55580.1 | 25.246 | 305 | 213 | 6 | 336 | 625 | 141 | 445 | 3.80e-19 | 90.9 |
MsaG019133 | AT5G59450.1 | 21.716 | 373 | 272 | 7 | 271 | 625 | 228 | 598 | 7.99e-18 | 87.8 |
MsaG019133 | AT4G08250.1 | 25.581 | 301 | 205 | 10 | 338 | 624 | 181 | 476 | 8.94e-18 | 87.0 |
MsaG019133 | AT4G37650.1 | 20.573 | 384 | 275 | 8 | 271 | 625 | 147 | 529 | 2.72e-17 | 85.9 |
MsaG019133 | AT3G46600.1 | 21.833 | 371 | 270 | 8 | 271 | 625 | 213 | 579 | 6.99e-15 | 78.6 |
MsaG019133 | AT1G07530.1 | 20.290 | 414 | 311 | 10 | 230 | 624 | 351 | 764 | 1.28e-14 | 77.8 |
MsaG019133 | AT3G46600.3 | 21.833 | 371 | 270 | 8 | 271 | 625 | 181 | 547 | 1.42e-14 | 77.4 |
MsaG019133 | AT3G46600.2 | 21.833 | 371 | 270 | 8 | 271 | 625 | 5 | 371 | 1.96e-14 | 75.9 |
MsaG019133 | AT1G07520.1 | 25.743 | 202 | 139 | 5 | 275 | 467 | 323 | 522 | 8.32e-14 | 75.1 |
MsaG019133 | AT1G07520.2 | 25.743 | 202 | 139 | 5 | 275 | 467 | 159 | 358 | 8.60e-14 | 74.7 |
MsaG019133 | AT1G07520.4 | 25.743 | 202 | 139 | 5 | 275 | 467 | 159 | 358 | 8.60e-14 | 74.7 |
MsaG019133 | AT1G07520.3 | 25.743 | 202 | 139 | 5 | 275 | 467 | 324 | 523 | 8.62e-14 | 75.1 |
MsaG019133 | AT1G50420.1 | 29.016 | 193 | 120 | 4 | 271 | 450 | 58 | 246 | 1.36e-12 | 70.9 |
MsaG019133 | AT2G29060.1 | 21.180 | 373 | 272 | 10 | 271 | 624 | 322 | 691 | 1.20e-11 | 68.2 |
MsaG019133 | AT2G29060.2 | 21.180 | 373 | 272 | 10 | 271 | 624 | 285 | 654 | 1.50e-11 | 67.8 |
MsaG019133 | AT2G29065.1 | 21.390 | 374 | 267 | 10 | 275 | 624 | 257 | 627 | 1.62e-11 | 67.8 |
Find 122 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTAATGCCTTTCAATCTTT+TGG | 0.183368 | 4:-23449248 | None:intergenic |
TTACAATGTGTTACCGCTTT+TGG | 0.235424 | 4:+23448225 | MsaT019133.1:CDS |
ATCAACCTCAACAACAAAAT+TGG | 0.235662 | 4:+23447744 | MsaT019133.1:CDS |
TTGAAATTCCTCAAAAGTTA+AGG | 0.300516 | 4:-23447651 | None:intergenic |
CATGTTATTGATTTCGATAT+CGG | 0.319001 | 4:+23448754 | MsaT019133.1:CDS |
TCCAATGTTACGACCACTTT+CGG | 0.324495 | 4:-23449111 | None:intergenic |
GACAATGTTGAAGATGAAAA+TGG | 0.331833 | 4:-23447839 | None:intergenic |
TGATGGATTACTTATGAAAC+TGG | 0.357205 | 4:-23449049 | None:intergenic |
ATTGATTTCGATATCGGGTT+TGG | 0.379458 | 4:+23448760 | MsaT019133.1:CDS |
TGAAATTCCTCAAAAGTTAA+GGG | 0.383228 | 4:-23447650 | None:intergenic |
GGTTCAAGCGCAAGGGATAT+TGG | 0.384808 | 4:+23448486 | MsaT019133.1:CDS |
TGAATGAAGCATTAACTGTA+AGG | 0.398966 | 4:-23448578 | None:intergenic |
AGAAGCTCAAGCCGAGTGTT+TGG | 0.406895 | 4:+23449389 | MsaT019133.1:CDS |
CAAATATACTCTGCTGAAGC+TGG | 0.434387 | 4:-23448420 | None:intergenic |
ATTTCAAGTGAAGGGAATGT+TGG | 0.436223 | 4:+23447667 | MsaT019133.1:CDS |
TTACTTATGAAACTGGAAAC+AGG | 0.436478 | 4:-23449042 | None:intergenic |
AATATCCCTTGCGCTTGAAC+CGG | 0.438162 | 4:-23448484 | None:intergenic |
TGGTGGTGGTGGTATGAGAA+TGG | 0.439587 | 4:+23447976 | MsaT019133.1:CDS |
TCAAGCCCTCATTGAAGCCT+TGG | 0.443453 | 4:+23448714 | MsaT019133.1:CDS |
CTTTGAAAAGGCTTACCAAT+TGG | 0.446191 | 4:-23448532 | None:intergenic |
ATGTTATTGATTTCGATATC+GGG | 0.446925 | 4:+23448755 | MsaT019133.1:CDS |
TTGTAATTCTCAGGAATGAA+TGG | 0.453236 | 4:-23448208 | None:intergenic |
AAATGTGAAGGGAGAGAAAC+CGG | 0.454419 | 4:-23449355 | None:intergenic |
AGAACATGAACGACATTTGT+GGG | 0.455440 | 4:-23449165 | None:intergenic |
GGTAACACATTGTAATTCTC+AGG | 0.461882 | 4:-23448217 | None:intergenic |
AAGCCGAGTGTTTGGTTCAA+AGG | 0.464484 | 4:+23449397 | MsaT019133.1:CDS |
TGGTATGAGAATGGAGGATT+GGG | 0.465608 | 4:+23447985 | MsaT019133.1:CDS |
TAGAAAGAAGCCCTTTGAAA+AGG | 0.471306 | 4:-23448544 | None:intergenic |
AACTCATCTCAGTTTCAACT+TGG | 0.473456 | 4:+23449487 | MsaT019133.1:CDS |
AGCCGAGTGTTTGGTTCAAA+GGG | 0.474056 | 4:+23449398 | MsaT019133.1:CDS |
GAAGATGAAAATGGAGAACT+AGG | 0.474745 | 4:-23447830 | None:intergenic |
CTTCCTCTCTTGTACTATGC+TGG | 0.476421 | 4:+23449454 | MsaT019133.1:CDS |
AGGGTTGAACATGGACGCTT+CGG | 0.483523 | 4:+23448159 | MsaT019133.1:CDS |
AAGTTGGCAAACTGAAGAAC+GGG | 0.484332 | 4:-23448682 | None:intergenic |
AATCACCAGCTCTCACCAAT+TGG | 0.485962 | 4:+23448517 | MsaT019133.1:CDS |
AAGGGCTTCTTTCTACATGA+AGG | 0.487466 | 4:+23448552 | MsaT019133.1:CDS |
CTTGCCATCATGTCCTCTAC+CGG | 0.490539 | 4:+23448978 | MsaT019133.1:CDS |
GGCTTGATTACAAGTAAAGT+TGG | 0.491191 | 4:-23448698 | None:intergenic |
CAGTTAATGCTTCATTCAAA+CGG | 0.491869 | 4:+23448583 | MsaT019133.1:CDS |
TTTGAGGAATTTCAAGTGAA+GGG | 0.497110 | 4:+23447659 | MsaT019133.1:CDS |
GCTGATAGAAGCTGGTAATC+CGG | 0.498189 | 4:+23448465 | MsaT019133.1:CDS |
AGGAACATGTTTCTTCAGTC+CGG | 0.498389 | 4:+23449336 | MsaT019133.1:CDS |
CCTTTCCAAGGCTTCAATGA+GGG | 0.498450 | 4:-23448719 | None:intergenic |
GTGGTATGAGAATGGAGGAT+TGG | 0.504718 | 4:+23447984 | MsaT019133.1:CDS |
TTCAAATAGCAATACTTCAA+TGG | 0.504902 | 4:+23447895 | MsaT019133.1:CDS |
TTTGATAGTAATGAAGCCAT+TGG | 0.505073 | 4:+23449009 | MsaT019133.1:CDS |
GTAATTTGTCACGCTGGTTG+TGG | 0.506339 | 4:-23449305 | None:intergenic |
TCCAATTGCGAAGCAGCAAA+AGG | 0.508239 | 4:+23448363 | MsaT019133.1:CDS |
GATGTTGAAGACCCTTATGC+TGG | 0.508840 | 4:+23448046 | MsaT019133.1:CDS |
AAGAACATGAACGACATTTG+TGG | 0.509012 | 4:-23449166 | None:intergenic |
TCTTGAATCAAGAACTGAAG+TGG | 0.511894 | 4:-23447801 | None:intergenic |
CAACCGACGACTGCTGTTGT+TGG | 0.513401 | 4:-23448339 | None:intergenic |
TCCACTTGAAATCCTCTCAC+AGG | 0.520356 | 4:-23449423 | None:intergenic |
CTGGTCAAGAAGTGTTTGCT+AGG | 0.526401 | 4:+23448251 | MsaT019133.1:CDS |
TTCAATCTCGTTGCAAGATG+AGG | 0.530780 | 4:-23448866 | None:intergenic |
TGCTGCAGATCATGATGATA+AGG | 0.531574 | 4:-23448310 | None:intergenic |
GCCGAAAGTGGTCGTAACAT+TGG | 0.532933 | 4:+23449110 | MsaT019133.1:CDS |
CTGGATGCTTGCATCATCTC+CGG | 0.537282 | 4:-23448401 | None:intergenic |
TTGTCATCTTCTCATGGTAG+TGG | 0.544818 | 4:+23447857 | MsaT019133.1:CDS |
ATCTTGCAAAGTGGTGGTTG+TGG | 0.551252 | 4:+23448079 | MsaT019133.1:CDS |
CTCTTGTACTATGCTGGCAG+AGG | 0.551367 | 4:+23449460 | MsaT019133.1:CDS |
TGCTAGGAGACATCAGCAGC+AGG | 0.551740 | 4:+23448267 | MsaT019133.1:CDS |
GGTAATCCGGTTCAAGCGCA+AGG | 0.552039 | 4:+23448478 | MsaT019133.1:CDS |
TCAACATTGTCATCTTCTCA+TGG | 0.552805 | 4:+23447851 | MsaT019133.1:CDS |
CAGCATAGTACAAGAGAGGA+AGG | 0.554718 | 4:-23449453 | None:intergenic |
GGTAGTGGTAGTAATGGTAA+TGG | 0.556024 | 4:+23447872 | MsaT019133.1:CDS |
GCTTACCAATTGGTGAGAGC+TGG | 0.557459 | 4:-23448522 | None:intergenic |
AAGGTGAGTTCTAGTACTAC+CGG | 0.560768 | 4:+23448382 | MsaT019133.1:CDS |
CCCTCATTGAAGCCTTGGAA+AGG | 0.561376 | 4:+23448719 | MsaT019133.1:CDS |
ACTGCTGAGCTGATAGAAGC+TGG | 0.561856 | 4:+23448457 | MsaT019133.1:CDS |
AAAGCAGCTAAGGCCGAAAG+TGG | 0.562649 | 4:+23449098 | MsaT019133.1:CDS |
TGGGAAGCGGAACATCCATT+CGG | 0.566308 | 4:-23449146 | None:intergenic |
ATGTACTCCAAAAGATTGAA+AGG | 0.570089 | 4:+23449241 | MsaT019133.1:CDS |
GTTCAAAGGGCACCTGTGAG+AGG | 0.570717 | 4:+23449411 | MsaT019133.1:CDS |
AGAGCCACAGGGAAGCATGA+TGG | 0.571215 | 4:-23449066 | None:intergenic |
TGAACGACATTTGTGGGAAG+CGG | 0.571358 | 4:-23449159 | None:intergenic |
AATTTGATCGAACCTTTCCA+AGG | 0.571559 | 4:-23448731 | None:intergenic |
CATCATTTGAAAGATGAGCA+AGG | 0.573001 | 4:-23447931 | None:intergenic |
TCTCATGGTAGTGGTAGTAA+TGG | 0.576556 | 4:+23447866 | MsaT019133.1:CDS |
TGTGAAGTTGCTAAATGTGA+AGG | 0.577706 | 4:-23449367 | None:intergenic |
TCAATCTCGTTGCAAGATGA+GGG | 0.580762 | 4:-23448865 | None:intergenic |
TGAAGAAACATGTTCCTCCA+TGG | 0.581165 | 4:-23449330 | None:intergenic |
ACCATCAACAAAATCGTCCT+CGG | 0.581686 | 4:+23449279 | MsaT019133.1:CDS |
TCATGATGATAAGGAAACAA+TGG | 0.582710 | 4:-23448301 | None:intergenic |
TCAAAGAAATGACCCGGTAG+AGG | 0.583745 | 4:-23448991 | None:intergenic |
CTTGAATCAAGAACTGAAGT+GGG | 0.584678 | 4:-23447800 | None:intergenic |
ACCTTTCCAAGGCTTCAATG+AGG | 0.587226 | 4:-23448720 | None:intergenic |
AACAAAATCTTGCAAAGTGG+TGG | 0.589673 | 4:+23448073 | MsaT019133.1:CDS |
TTCAAACGGTAACAATCTCA+CGG | 0.592949 | 4:+23448597 | MsaT019133.1:CDS |
AACAGGAAAGTTCACACCAA+TGG | 0.593516 | 4:-23449025 | None:intergenic |
ACAACAACAAGGGTTGAACA+TGG | 0.594872 | 4:+23448150 | MsaT019133.1:CDS |
AGCGTGACAAATTACCTCCA+TGG | 0.597025 | 4:+23449313 | MsaT019133.1:CDS |
GAGATTGCACTAAGAAGTAA+CGG | 0.597858 | 4:+23448808 | MsaT019133.1:CDS |
AAAGTTGGCAAACTGAAGAA+CGG | 0.598516 | 4:-23448683 | None:intergenic |
TGGTGGTGGTATGAGAATGG+AGG | 0.610885 | 4:+23447979 | MsaT019133.1:CDS |
TAAAGAAGATTATTGCTATG+TGG | 0.612360 | 4:+23447775 | MsaT019133.1:CDS |
TTGCCATCATGTCCTCTACC+GGG | 0.614713 | 4:+23448979 | MsaT019133.1:CDS |
TGACCCGGTAGAGGACATGA+TGG | 0.615427 | 4:-23448982 | None:intergenic |
TTGGATCATCAACAACAACA+AGG | 0.618244 | 4:+23448139 | MsaT019133.1:CDS |
TGAACTTAAACGACATGTTG+AGG | 0.620897 | 4:-23448930 | None:intergenic |
CTGCCAGCATAGTACAAGAG+AGG | 0.625030 | 4:-23449457 | None:intergenic |
ATGAGAATGGAGGATTGGGA+AGG | 0.628687 | 4:+23447989 | MsaT019133.1:CDS |
ATGGAGGTAATTTGTCACGC+TGG | 0.629161 | 4:-23449311 | None:intergenic |
AAGATGAAAATGGAGAACTA+GGG | 0.633076 | 4:-23447829 | None:intergenic |
TGGATCATCAACAACAACAA+GGG | 0.635863 | 4:+23448140 | MsaT019133.1:CDS |
ACAGCAGTAATCTTAAGTGA+AGG | 0.636223 | 4:-23448835 | None:intergenic |
GTAATCCGGTTCAAGCGCAA+GGG | 0.638818 | 4:+23448479 | MsaT019133.1:CDS |
AAGCGCAAGGGATATTGGCG+CGG | 0.648472 | 4:+23448491 | MsaT019133.1:CDS |
TGCCCTTTGAACCAAACACT+CGG | 0.651926 | 4:-23449400 | None:intergenic |
ACCTGTGAGAGGATTTCAAG+TGG | 0.654432 | 4:+23449422 | MsaT019133.1:CDS |
GTGAAGTTGCTAAATGTGAA+GGG | 0.657081 | 4:-23449366 | None:intergenic |
ATGGACGCTTCGGTTCAACA+AGG | 0.660128 | 4:+23448169 | MsaT019133.1:CDS |
ATATCGGGTTTGGAGTACAA+TGG | 0.666838 | 4:+23448770 | MsaT019133.1:CDS |
TTACTATCAAAGAAATGACC+CGG | 0.669847 | 4:-23448997 | None:intergenic |
TCTTGACCAGAATCCAAAAG+CGG | 0.685854 | 4:-23448238 | None:intergenic |
TGGACGCTTCGGTTCAACAA+GGG | 0.687015 | 4:+23448170 | MsaT019133.1:CDS |
CACGCTGGTTGTGGTGACCG+AGG | 0.687932 | 4:-23449296 | None:intergenic |
TTACCAACAACAGCAGTCGT+CGG | 0.697756 | 4:+23448336 | MsaT019133.1:CDS |
AGAAACATGTTCCTCCATGG+AGG | 0.701239 | 4:-23449327 | None:intergenic |
TAATCCATCATGCTTCCCTG+TGG | 0.706732 | 4:+23449062 | MsaT019133.1:CDS |
TTGAACAAAATCTTGCAAAG+TGG | 0.719051 | 4:+23448070 | MsaT019133.1:CDS |
GTGACAAATTACCTCCATGG+AGG | 0.762900 | 4:+23449316 | MsaT019133.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 23447638 | 23449518 | 23447638 | ID=MsaG019133 |
Chr4 | mRNA | 23447638 | 23449518 | 23447638 | ID=MsaT019133.1;Parent=MsaG019133 |
Chr4 | exon | 23447638 | 23449518 | 23447638 | ID=MsaT019133.1.exon1;Parent=MsaT019133.1 |
Chr4 | CDS | 23447638 | 23449518 | 23447638 | ID=cds.MsaT019133.1;Parent=MsaT019133.1 |
Gene Sequence |
Protein sequence |