AlfalfaGEDB | MsaG019177

M. sativa ssp. caerulea / MsaG019177

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019177	XP_039689308.1	88.568	866	58	3	1	825	1	866	0.0	1502

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019177	sp\|Q9LZV7\|PXC2_ARATH	45.379	963	367	16	7	817	8	963	0.0	722

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019177	tr\|G7JIA7\|G7JIA7_MEDTR	88.568	866	58	3	1	825	1	866	0.0	1502

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019177	MtrunA17_Chr4g0012841	88.568	866	58	3	1	825	1	866	0.0	1502
MsaG019177	MtrunA17_Chr7g0244931	53.454	941	311	11	7	822	13	951	0.0	900
MsaG019177	MtrunA17_Chr3g0128731	45.094	958	368	11	20	822	32	986	0.0	772
MsaG019177	MtrunA17_Chr7g0222321	35.944	996	423	22	11	822	50	1014	3.89e-155	479
MsaG019177	MtrunA17_Chr5g0398441	31.713	905	500	21	7	820	15	892	3.34e-108	352
MsaG019177	MtrunA17_Chr1g0151041	28.882	921	479	16	34	810	1	889	5.75e-98	326
MsaG019177	MtrunA17_Chr1g0183231	30.713	827	462	20	76	822	193	988	2.76e-96	323
MsaG019177	MtrunA17_Chr1g0183231	31.187	497	241	8	28	450	24	493	2.91e-53	200
MsaG019177	MtrunA17_Chr1g0183231	35.271	258	167	0	195	452	70	327	5.93e-33	137
MsaG019177	MtrunA17_Chr1g0190411	30.632	839	453	19	75	810	171	983	5.86e-94	317

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019177	AT5G01890.1	45.379	963	367	16	7	817	8	963	0.0	722
MsaG019177	AT3G56370.1	44.154	958	387	15	10	822	6	960	0.0	697
MsaG019177	AT3G28040.1	34.935	999	458	20	5	813	8	1004	2.89e-167	511
MsaG019177	AT1G12460.1	31.688	871	482	12	34	814	30	877	1.82e-109	356
MsaG019177	AT5G62230.2	30.333	900	495	18	4	810	6	866	5.51e-102	337
MsaG019177	AT5G48940.1	32.010	781	460	15	83	824	287	1035	9.00e-99	332
MsaG019177	AT5G48940.1	31.538	520	276	7	6	451	20	533	1.26e-52	199
MsaG019177	AT1G62950.1	29.393	922	482	16	18	818	16	889	5.18e-98	325
MsaG019177	AT4G28650.1	31.458	782	429	15	83	810	248	976	8.98e-98	327
MsaG019177	AT4G28650.1	33.737	495	281	6	1	450	1	493	4.17e-58	215

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Find 131 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACAATGGTCTAGCAT+TGG	0.557610	4:-24459878	None:intergenic
AAAATCTTGTGGCAATTGAA+GGG	0.583952	4:+24459597	MsaT019177.1:CDS
AAACAATTCCAAATCCACCG+CGG	0.803800	4:-24459454	None:intergenic
AAACAGTTTCCTATGCTCTC+CGG	0.551088	4:-24457762	None:intergenic
AAAGAACAAGAAACAATGAT+AGG	0.462779	4:-24457083	None:intergenic
AAAGATGTGTAAGATTTGTG+AGG	0.594556	4:-24458971	None:intergenic
AAAGGTGAACTACCAATTGG+TGG	0.547986	4:+24459023	MsaT019177.1:CDS
AAAGTGTAATAAGAAGATCA+TGG	0.548795	4:-24457398	None:intergenic
AAGTGACTCTGTGATAATAT+TGG	0.367534	4:+24460150	MsaT019177.1:CDS
AATGTGATCCTTCAACAAAT+AGG	0.352401	4:+24457256	MsaT019177.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	24457063	24460285	24457063	ID=MsaG019177
Chr4	mRNA	24457063	24460285	24457063	ID=MsaT019177.1;Parent=MsaG019177
Chr4	exon	24457063	24458231	24457063	ID=MsaT019177.1.exon1;Parent=MsaT019177.1
Chr4	CDS	24457063	24458231	24457063	ID=cds.MsaT019177.1;Parent=MsaT019177.1
Chr4	exon	24458857	24459959	24458857	ID=MsaT019177.1.exon2;Parent=MsaT019177.1
Chr4	CDS	24458857	24459959	24458857	ID=cds.MsaT019177.1;Parent=MsaT019177.1
Chr4	exon	24460080	24460285	24460080	ID=MsaT019177.1.exon3;Parent=MsaT019177.1
Chr4	CDS	24460080	24460285	24460080	ID=cds.MsaT019177.1;Parent=MsaT019177.1

Gene Sequence

>MsaT019177.1

ATGCAAGATCAATTCATCATCCTATCATTGTTTCTTGTTCTTTTTGGTTCACACCAAGTGATCTCACAAAACCAACCTTTCAATGAAGATATGCTGGGGTTGATTGTGTTCAAAGCAGGTCTAGAAGATCCGAAAAACAAACTTTCTTCTTGGAATGAAGATGATTATAGTCCTTGCAATTGGGAAGGTGTCAAATGTGATCCTTCAACAAATAGGGTATCTTCTCTTGTTCTTGATGGATTCTCTCTTTCAGGACATATCGGTAAAAGCCTTATGAGATTGCAGTTCCTTCAAATTCTTTCACTTTCTCGGAACAACTTCACGGGGAGAATAAACCATGATCTTCTTATTACACTTTGGAATCTAAAAGTTGTTGATTTGAGTGAAAACAATCTCTTTGGAACAATTCCGGATGAACTTTTTAAACAATGTTGGTCTCTTAGAGTTTTATCGTTCGCGAAAAACAATCTCACGGGTACGATTCCTGACTCTTTGAGTTCATGCTACTCCTTAGCAAGTTTGAACTTTTCGTCTAATCAACTGAAAGGTGAATTACATTATGGAATGTGGTTTTTGAAGGAACTTCAATCGCTTGATCTCTCGAATAACTTTCTTGAAGGAGAGATTCCGGAAGGAATTCAAAACCTATATGATTTGAGAGAGTTAAGGCTAGGGAGGAATTTTTTCAAAGGTAAGATTCCGGAGAGCATAGGAAACTGTTTGCTTTTGAAGTTGATCGATTTCAGTGATAATCTTCTTACTGATATAATTCCAGAGTCGATACAAAGACTCGCCTCATGCACATTACTAAGTTTGCAAGGGAATTATTTCAATGGGAGCATTCCACATTGGATTGGTGAATTGAACAATTTAGAGATATTGAAACTTTCTTCTAATAGATTTTCTGGTCAAATCCCATTTGGCATTGGTGGTCTTAGTAGTTTGCAAGTTTTGAATTTATCTACAAACAATATTTCTGGTTCTATTCCAGTGAGTATAAGAGAGCTTAAATCTTTGTATGTTCTTGATCTAAGTGATAACAAGCTTAATGGAAGCATTCCTTATGAAATAAAAGGAGCAATTTCACTTGGTGAATTGAGGCTGCAAAAGAATTTCTTAGGTGGAAGAATTCCAGTCCAAATTGCAAAATGTTCAGCATTAACATCTTTGAATCTTGCACACAACAAGCTTATTGGTTCAATCCCTACATCAATTGCAGACCTAACAAATCTTCAATATGCAGATTTATCATACAATAAACTCTCTGGAACATTACCTAAAAACCTCACAAATCTTACACATCTTTTCTCATTCAATGTTTCCTATAACAATCTTAAAGGTGAACTACCAATTGGTGGATTCTTCAATACAATCACTCCTTCATTTGTTCGCGGCAATCCTTTATTATGTGGTTCTGTTGTTAATCACTCATGTGATCAATCTTATCATCCAAAACCTATTGTTTTAAACCCTAATTCAGATTACAACAATTCAAGATCTTCCTTGAAAAACCATCATCATAAGATAATGCTTAGTGTTTCGGTCTTTATTGCTATCGGTGCAGCAATTTCTATTGTTGTCGGTATTGTTGCTGTTACTGTTTTAAATATTCATGTTAGGTCTTCAATTTCACATTCTGGTGGTGAGGAATTTAGTTTTTCGCCTGAAAAAGATCCGAAATGCGGACAACTTGTGATGTTTAATGGTGATGTTATTGAGTTTGCGGACGAGGCAAATGATCTTCTTAAAGAAGGTAATGAAATCGGCCGCGGTGGATTTGGAATTGTTTATTGTGTTGTCCTTCGAGATCGGAATTCTGTTGCAATTAAGAAGCTTATAGGTTCAAGTTTGATGAAGTCACGAGTTGATTTTGAGAGTGAAGTTCAAAAGCTTGGAAAAATTAGGCATCAAAATCTTGTGGCAATTGAAGGGTATTATTGGAATCCATCTTTTCAGCTTATTATTTATGAGTACTTTTCTAGAGGAAGTTTGCATAAGCTTCTACATGATAATCAAAGCAAAATTGTGTTTTCTTGGAGAGCAAGGTTCAAGGTTATTTTAGGAATTGCAAAAGGGTTGGCCTATTTACATGAAATGGACATAATCCATTATAATATGAAATCTACTAATGTTTTCATTGATGTTTCTGATGAACCAAAAATAGGAGATTTTGGTATGGTGAATCTTTTACCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTCGGATACACGGCTCCTGAGTTTGCTTGCCGTGACAGAGTGAATTGGAGGATGGAAAAATTGAGCAATGCGTTGATGAGAAGCTCGTTGGTAAATTTTCGCCGAGGAAGTGACTCTGTGATAATATTGGGACTGGTTTGTGCATCACAAGTACCGTCGAATCGTCCCGATATGGCTGAGGTTGTTAACATATTAGAGATGATTCAATGCTCTTCAGAAGGACAACAAGAAGAAATAAAATAA

Protein sequence

>MsaT019177.1

MQDQFIILSLFLVLFGSHQVISQNQPFNEDMLGLIVFKAGLEDPKNKLSSWNEDDYSPCNWEGVKCDPSTNRVSSLVLDGFSLSGHIGKSLMRLQFLQILSLSRNNFTGRINHDLLITLWNLKVVDLSENNLFGTIPDELFKQCWSLRVLSFAKNNLTGTIPDSLSSCYSLASLNFSSNQLKGELHYGMWFLKELQSLDLSNNFLEGEIPEGIQNLYDLRELRLGRNFFKGKIPESIGNCLLLKLIDFSDNLLTDIIPESIQRLASCTLLSLQGNYFNGSIPHWIGELNNLEILKLSSNRFSGQIPFGIGGLSSLQVLNLSTNNISGSIPVSIRELKSLYVLDLSDNKLNGSIPYEIKGAISLGELRLQKNFLGGRIPVQIAKCSALTSLNLAHNKLIGSIPTSIADLTNLQYADLSYNKLSGTLPKNLTNLTHLFSFNVSYNNLKGELPIGGFFNTITPSFVRGNPLLCGSVVNHSCDQSYHPKPIVLNPNSDYNNSRSSLKNHHHKIMLSVSVFIAIGAAISIVVGIVAVTVLNIHVRSSISHSGGEEFSFSPEKDPKCGQLVMFNGDVIEFADEANDLLKEGNEIGRGGFGIVYCVVLRDRNSVAIKKLIGSSLMKSRVDFESEVQKLGKIRHQNLVAIEGYYWNPSFQLIIYEYFSRGSLHKLLHDNQSKIVFSWRARFKVILGIAKGLAYLHEMDIIHYNMKSTNVFIDVSDEPKIGDFGMVNLLPMLDHCVLSSKIQSALGYTAPEFACRDRVNWRMEKLSNALMRSSLVNFRRGSDSVIILGLVCASQVPSNRPDMAEVVNILEMIQCSSEGQQEEIK*