AlfalfaGEDB | MsaG019203

M. sativa ssp. caerulea / MsaG019203

KEGG: -
GO: GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF04844.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019203	XP_013455173.1	93.050	259	14	3	17	274	127	382	1.50e-146	426

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019203	sp\|O04351\|OFP2_ARATH	54.839	124	52	3	151	273	199	319	3.08e-30	118

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019203	tr\|I3SI32\|I3SI32_MEDTR	93.050	259	14	3	17	274	127	382	7.14e-147	426

TFs/TRs:

Gene ID	Type	Classification
MsaG019203	TF	OFP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000135	MsaG019203	0.808204	5.912660e-50	9.669473e-48
MsaG001810	MsaG019203	0.810666	1.761688e-50	3.057665e-48
MsaG001939	MsaG019203	0.848448	1.153472e-59	5.929115e-57
MsaG002379	MsaG019203	0.842378	4.990787e-58	2.100734e-55
MsaG002603	MsaG019203	0.803202	6.565006e-49	9.546931e-47
MsaG003329	MsaG019203	0.827379	2.884116e-54	7.750882e-52
MsaG003422	MsaG019203	0.831802	2.452559e-55	7.477201e-53
MsaG003470	MsaG019203	0.816712	8.340815e-52	1.684082e-49
MsaG003514	MsaG019203	0.804255	3.977429e-49	5.926891e-47
MsaG004070	MsaG019203	0.824478	1.398806e-53	3.468900e-51
MsaG004107	MsaG019203	0.827282	3.042512e-54	8.154231e-52
MsaG004382	MsaG019203	0.818746	2.913579e-52	6.199924e-50
MsaG004621	MsaG019203	0.807482	8.407003e-50	1.351202e-47
MsaG005060	MsaG019203	0.809014	3.977221e-50	6.632440e-48
MsaG005062	MsaG019203	0.824152	1.667302e-53	4.098121e-51
MsaG005526	MsaG019203	0.831659	2.658424e-55	8.070993e-53
MsaG005722	MsaG019203	0.801402	1.535026e-48	2.142200e-46
MsaG005869	MsaG019203	0.814505	2.572312e-51	4.910844e-49
MsaG006324	MsaG019203	0.819266	2.221779e-52	4.793028e-50
MsaG006657	MsaG019203	0.807798	7.206435e-50	1.167087e-47
MsaG006765	MsaG019203	0.806969	1.078136e-49	1.711852e-47
MsaG007139	MsaG019203	0.801333	1.585608e-48	2.209374e-46
MsaG007442	MsaG019203	0.836188	1.980282e-56	6.873787e-54
MsaG007630	MsaG019203	0.826341	5.091805e-54	1.329325e-51
MsaG008619	MsaG019203	0.817480	5.615946e-52	1.156604e-49
MsaG008890	MsaG019203	0.810562	1.854799e-50	3.211143e-48
MsaG009725	MsaG019203	0.811237	1.326829e-50	2.335353e-48
MsaG012723	MsaG019203	0.820842	9.722013e-53	2.186279e-50
MsaG015485	MsaG019203	0.825614	7.564580e-54	1.935311e-51
MsaG016209	MsaG019203	0.802188	1.060427e-48	1.506564e-46
MsaG016215	MsaG019203	0.828620	1.454825e-54	4.048296e-52
MsaG016327	MsaG019203	0.825142	9.770779e-54	2.467421e-51
MsaG016397	MsaG019203	0.829338	9.764322e-55	2.772660e-52
MsaG016772	MsaG019203	0.803788	4.970357e-49	7.326390e-47
MsaG016818	MsaG019203	0.807791	7.234259e-50	1.171381e-47
MsaG017009	MsaG019203	0.835156	3.603715e-56	1.212728e-53
MsaG017495	MsaG019203	0.814044	3.249368e-51	6.131891e-49
MsaG017644	MsaG019203	0.811222	1.337026e-50	2.352424e-48
MsaG017699	MsaG019203	0.810700	1.732472e-50	3.009402e-48
MsaG017954	MsaG019203	0.810857	1.602476e-50	2.794346e-48
MsaG019120	MsaG019203	0.824300	1.540132e-53	3.800939e-51
MsaG019160	MsaG019203	0.813323	4.674886e-51	8.663950e-49
MsaG019203	MsaG019237	0.814372	2.751307e-51	5.235187e-49
MsaG019203	MsaG019466	0.817656	5.126916e-52	1.060630e-49
MsaG019203	MsaG019638	0.807640	7.783949e-50	1.255792e-47
MsaG019203	MsaG019649	0.847310	2.365899e-59	1.170667e-56
MsaG019203	MsaG019645	0.801843	1.247203e-48	1.758113e-46
MsaG019203	MsaG019672	0.847369	2.280385e-59	1.130563e-56
MsaG019203	MsaG019907	0.811091	1.426637e-50	2.502072e-48
MsaG019203	MsaG019944	0.817767	4.841332e-52	1.004448e-49
MsaG019203	MsaG020327	0.801776	1.287270e-48	1.811788e-46
MsaG019203	MsaG020591	0.821860	5.673390e-53	1.310809e-50
MsaG019203	MsaG020733	0.806922	1.103125e-49	1.749561e-47
MsaG019203	MsaG020972	0.826839	3.878166e-54	1.026590e-51
MsaG019203	MsaG021683	0.852359	9.317799e-61	5.481657e-58
MsaG019203	MsaG022899	0.812364	7.563122e-51	1.368607e-48
MsaG019203	MsaG023047	0.813378	4.546816e-51	8.438459e-49
MsaG019203	MsaG023188	0.801213	1.677288e-48	2.330678e-46
MsaG019203	MsaG023711	0.811773	1.016209e-50	1.812252e-48
MsaG019203	MsaG023729	0.816800	7.972380e-52	1.613335e-49
MsaG019203	MsaG023834	0.809391	3.304704e-50	5.561124e-48
MsaG019203	MsaG023861	0.806925	1.101449e-49	1.747047e-47
MsaG019203	MsaG024295	0.827014	3.523586e-54	9.372805e-52
MsaG019203	MsaG025143	0.806576	1.304560e-49	2.052351e-47
MsaG019203	MsaG025153	0.824703	1.238981e-53	3.091408e-51
MsaG019203	MsaG025740	0.808606	4.859409e-50	8.023994e-48
MsaG019203	MsaG026587	0.813400	4.496385e-51	8.349510e-49
MsaG019203	MsaG026686	0.863324	5.365402e-64	4.742453e-61
MsaG019203	MsaG027198	0.830466	5.201301e-55	1.525402e-52
MsaG019203	MsaG027210	0.812898	5.787945e-51	1.061362e-48
MsaG019203	MsaG027376	0.843553	2.436160e-58	1.064834e-55
MsaG019203	MsaG027511	0.828175	1.860935e-54	5.114062e-52
MsaG019203	MsaG028277	0.826995	3.561888e-54	9.469511e-52
MsaG019203	MsaG028531	0.856875	4.651696e-62	3.217486e-59
MsaG019203	MsaG029053	0.811623	1.094829e-50	1.945311e-48
MsaG019203	MsaG029213	0.812233	8.076390e-51	1.456647e-48
MsaG019203	MsaG029307	0.827758	2.341379e-54	6.359657e-52
MsaG019203	MsaG029546	0.819923	1.575816e-52	3.458657e-50
MsaG019203	MsaG029618	0.807648	7.754979e-50	1.251352e-47
MsaG019203	MsaG029953	0.810776	1.668251e-50	2.903336e-48
MsaG019203	MsaG032901	0.832955	1.274466e-55	4.017788e-53
MsaG019203	MsaG034217	0.816292	1.034799e-51	2.067013e-49
MsaG019203	MsaG034403	0.819229	2.265590e-52	4.882604e-50
MsaG019203	MsaG040504	0.805131	2.616200e-49	3.978452e-47
MsaG019203	MsaG040577	0.812414	7.374957e-51	1.336220e-48
MsaG019203	MsaG040600	0.850541	3.027604e-60	1.671731e-57
MsaG019203	MsaG041721	0.833412	9.819982e-56	3.137758e-53
MsaG019203	MsaG041754	0.810377	2.032270e-50	3.502698e-48
MsaG019203	MsaG041800	0.821894	5.574701e-53	1.289133e-50
MsaG019203	MsaG043371	0.800437	2.411216e-48	3.292493e-46
MsaG019203	MsaG044200	0.841834	6.940770e-58	2.871033e-55
MsaG019203	MsaG044688	0.803026	7.136264e-49	1.033544e-46
MsaG019203	MsaG044722	0.800733	2.100232e-48	2.887050e-46
MsaG019203	MsaG044928	0.810583	1.835514e-50	3.179395e-48
MsaG019203	MsaG045284	0.811840	9.829713e-51	1.755891e-48
MsaG019203	MsaG045331	0.818024	4.239454e-52	8.854182e-50
MsaG019203	MsaG045387	0.800206	2.686164e-48	3.648615e-46
MsaG019203	MsaG045819	0.823407	2.488534e-53	5.994216e-51
MsaG019203	MsaG045832	0.814837	2.173149e-51	4.183699e-49
MsaG019203	MsaG046123	0.809048	3.911317e-50	6.527964e-48
MsaG019203	MsaG046173	0.814990	2.010829e-51	3.886201e-49
MsaG019203	MsaG046306	0.819475	1.992305e-52	4.321429e-50
MsaG019203	MsaG046497	0.822491	4.057351e-53	9.534348e-51
MsaG019203	MsaG046503	0.868976	8.859221e-66	9.836616e-63
MsaG019203	MsaG046603	0.857318	3.449704e-62	2.425254e-59
MsaG019203	MsaG046972	0.812737	6.274682e-51	1.146015e-48
MsaG019203	MsaG046975	0.819453	2.015078e-52	4.368434e-50
MsaG019203	MsaG047097	0.813341	4.632408e-51	8.589202e-49
MsaG019203	MsaG002106	0.812712	6.353783e-51	1.159739e-48
MsaG019203	MsaG002000	0.803292	6.288718e-49	9.164168e-47
MsaG019203	MsaG001807	0.813174	5.036889e-51	9.300482e-49
MsaG019203	MsaG001987	0.841721	7.428526e-58	3.061701e-55
MsaG019203	MsaG005167	0.842547	4.501753e-58	1.905237e-55
MsaG019203	MsaG001893	0.859679	6.870343e-63	5.276614e-60
MsaG019203	MsaG014164	0.811982	9.154864e-51	1.641065e-48
MsaG019203	MsaG020128	0.802495	9.174198e-49	1.312608e-46
MsaG019203	MsaG028079	0.802981	7.291003e-49	1.054859e-46
MsaG019203	MsaG033602	0.813149	5.100908e-51	9.412770e-49
MsaG019203	MsaG031891	0.814315	2.832709e-51	5.382242e-49
MsaG019203	MsaG031012	0.849224	7.041241e-60	3.716751e-57
MsaG019203	MsaG031186	0.820315	1.283119e-52	2.845788e-50
MsaG019203	MsaG033836	0.823240	2.720015e-53	6.522429e-51
MsaG019203	MsaG034655	0.812909	5.756437e-51	1.055881e-48
MsaG019203	MsaG033082	0.820622	1.091642e-52	2.440670e-50
MsaG019203	MsaG032525	0.801678	1.348152e-48	1.893249e-46
MsaG019203	MsaG033319	0.827603	2.550497e-54	6.897456e-52
MsaG019203	MsaG031246	0.801085	1.780758e-48	2.467347e-46
MsaG019203	MsaG032718	0.833386	9.965491e-56	3.181742e-53
MsaG019203	MsaG032252	0.818493	3.323082e-52	7.024919e-50
MsaG019203	MsaG031847	0.859262	9.151706e-63	6.919247e-60
MsaG019203	MsaG036286	0.815826	1.313433e-51	2.592635e-49
MsaG019203	MsaG037374	0.804748	3.142441e-49	4.736403e-47
MsaG019203	MsaG035600	0.827596	2.559913e-54	6.921657e-52
MsaG019203	MsaG037531	0.848514	1.105838e-59	5.697134e-57
MsaG019203	MsaG037725	0.800273	2.602344e-48	3.540252e-46
MsaG019203	MsaG036685	0.815870	1.284110e-51	2.537556e-49
MsaG019203	MsaG039797	0.803136	6.772312e-49	9.833426e-47
MsaG019203	MsaG036758	0.817582	5.326339e-52	1.099804e-49
MsaG019203	MsaG041442	0.809681	2.865850e-50	4.856556e-48
MsaG019203	MsaG044977	0.843967	1.889787e-58	8.369737e-56
MsaG019203	MsaG042876	0.817973	4.351867e-52	9.077077e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019203	MtrunA17_Chr4g0013081	93.050	259	14	3	17	274	127	382	1.38e-150	426
MsaG019203	MtrunA17_Chr7g0244571	52.708	277	67	11	27	272	104	347	1.40e-71	223
MsaG019203	MtrunA17_Chr5g0432531	45.918	196	81	7	92	272	67	252	3.24e-42	145
MsaG019203	MtrunA17_Chr2g0284471	37.838	148	79	2	137	274	171	315	4.38e-26	104
MsaG019203	MtrunA17_Chr8g0379681	55.224	67	30	0	207	273	259	325	1.75e-21	92.0
MsaG019203	MtrunA17_Chr1g0177881	46.377	69	37	0	199	267	95	163	5.66e-16	73.9
MsaG019203	MtrunA17_Chr4g0075391	47.761	67	35	0	204	270	79	145	3.50e-15	71.2
MsaG019203	MtrunA17_Chr8g0390531	52.459	61	29	0	207	267	259	319	6.13e-15	73.6
MsaG019203	MtrunA17_Chr4g0025901	49.180	61	31	0	207	267	100	160	1.78e-13	67.0
MsaG019203	MtrunA17_Chr7g0267111	45.000	60	33	0	208	267	112	171	7.03e-13	65.9
MsaG019203	MtrunA17_Chr3g0141471	39.604	101	55	2	169	267	163	259	7.64e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019203	AT2G30400.1	54.839	124	52	3	151	273	199	319	3.13e-31	118
MsaG019203	AT1G06920.1	56.075	107	41	2	164	270	207	307	1.14e-30	117
MsaG019203	AT5G01840.1	51.754	114	45	2	158	270	158	262	2.25e-27	107
MsaG019203	AT5G58360.1	50.000	114	50	2	159	272	184	290	7.46e-27	106
MsaG019203	AT4G18830.1	36.810	163	82	4	124	270	189	346	6.85e-20	88.2
MsaG019203	AT5G19650.1	53.125	64	30	0	207	270	155	218	1.14e-15	74.7
MsaG019203	AT3G52525.1	46.154	65	35	0	205	269	65	129	1.24e-14	70.1
MsaG019203	AT2G18500.1	46.032	63	34	0	208	270	228	290	2.71e-13	69.3
MsaG019203	AT4G04025.1	46.053	76	34	1	191	266	105	173	6.05e-13	65.9
MsaG019203	AT2G36026.1	50.000	56	28	0	212	267	92	147	1.45e-12	65.1

Find 42 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACACGGTCGGTCCTGAATTC+AGG	0.231482	4:+24874193	None:intergenic
TCAAGGTATTCAAGCAAATA+TGG	0.240278	4:-24873565	MsaT019203.1:CDS
TGGTTTGATTTGACTGAAAC+AGG	0.278617	4:-24873545	MsaT019203.1:CDS
TGATGAAACTGAACAATTCT+TGG	0.299759	4:+24873806	None:intergenic
CATAAGAGCATCAAAGGATT+TGG	0.303549	4:-24873645	MsaT019203.1:CDS
AGTCCCCTGACCCTGAATTC+AGG	0.363541	4:-24874204	MsaT019203.1:CDS
GTGTCATCGACGGTGAATTC+CGG	0.364774	4:-24873770	MsaT019203.1:CDS
TGAACCATCGTTCGATGAAA+TGG	0.378307	4:-24874158	MsaT019203.1:CDS
CTTGAGAGACTCTTGTTTGA+AGG	0.400641	4:+24873928	None:intergenic
AGCTTGTAAAACCAAGCATT+GGG	0.421130	4:+24874622	None:intergenic
CAGATATGATTCCCAATGCT+TGG	0.444868	4:-24874633	MsaT019203.1:intron
TAGCTTGTAAAACCAAGCAT+TGG	0.457451	4:+24874621	None:intergenic
TCGGTCCTGAATTCAGGGTC+AGG	0.466344	4:+24874199	None:intergenic
AGAAAAGATGATAAACTTGA+AGG	0.480676	4:-24874034	MsaT019203.1:CDS
TTGAGAGACTCTTGTTTGAA+GGG	0.488524	4:+24873929	None:intergenic
AGAATTGTTCAGTTTCATCA+TGG	0.500576	4:-24873803	MsaT019203.1:CDS
GGCTATCGGAGAAGCTTCTC+CGG	0.501925	4:-24873749	MsaT019203.1:CDS
TTGTTCAGTTTCATCATGGC+CGG	0.517006	4:-24873799	MsaT019203.1:CDS
GTTGCAAGAACAAGAAGAAG+TGG	0.529061	4:+24874126	None:intergenic
CGGTCCTGAATTCAGGGTCA+GGG	0.533564	4:+24874200	None:intergenic
CACGGTCGGTCCTGAATTCA+GGG	0.533725	4:+24874194	None:intergenic
TTTATACGAAGTTTCACTCC+AGG	0.535059	4:+24873833	None:intergenic
GAATAACATAAGAGCATCAA+AGG	0.542179	4:-24873651	MsaT019203.1:CDS
TCATCGAACGATGGTTCAGT+TGG	0.543834	4:+24874163	None:intergenic
GTATCATGATCTTATTATCA+AGG	0.547052	4:-24873582	MsaT019203.1:CDS
TGATTTGACTGAAACAGGGT+AGG	0.547431	4:-24873540	None:intergenic
GAAAAGATGATAAACTTGAA+GGG	0.551953	4:-24874033	MsaT019203.1:CDS
GATTTGACTGAAACAGGGTA+GGG	0.553104	4:-24873539	None:intergenic
CTTCACTATTGCTAGACTAC+CGG	0.553123	4:+24873730	None:intergenic
GGAGAAGCTTCTCCGATAGC+CGG	0.561715	4:+24873751	None:intergenic
AATGGTTCTGTAAATTCACC+TGG	0.567631	4:-24873851	MsaT019203.1:CDS
CGACGGTGAATTCCGGCTAT+CGG	0.576491	4:-24873763	MsaT019203.1:CDS
GTCAATGGTGGAGATGATTG+TGG	0.584914	4:-24873675	MsaT019203.1:CDS
GACTCTCTAAAATCCTTCTG+AGG	0.593112	4:+24873695	None:intergenic
GGTCCTGAATTCAGGGTCAG+GGG	0.604260	4:+24874201	None:intergenic
GATTCAGTTAAACTATCAAG+TGG	0.609478	4:+24874229	None:intergenic
CCGGAAAAGTGTGTCATCGA+CGG	0.614964	4:-24873780	MsaT019203.1:CDS
GAAACCATTTCATCGAACGA+TGG	0.643541	4:+24874154	None:intergenic
AGTTGGTATCAGAACACGGT+CGG	0.669498	4:+24874180	None:intergenic
GGTTTGATTTGACTGAAACA+GGG	0.673887	4:-24873544	MsaT019203.1:CDS
GAACGACGCTTGAATCAGTG+TGG	0.678886	4:-24874291	MsaT019203.1:CDS
GTTCAGTTGGTATCAGAACA+CGG	0.691441	4:+24874176	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	24873541	24874680	24873541	ID=MsaG019203
Chr4	mRNA	24873541	24874680	24873541	ID=MsaT019203.1;Parent=MsaG019203
Chr4	exon	24873541	24874318	24873541	ID=MsaT019203.1.exon2;Parent=MsaT019203.1
Chr4	CDS	24873541	24874318	24873541	ID=cds.MsaT019203.1;Parent=MsaT019203.1
Chr4	exon	24874634	24874680	24874634	ID=MsaT019203.1.exon1;Parent=MsaT019203.1
Chr4	CDS	24874634	24874680	24874634	ID=cds.MsaT019203.1;Parent=MsaT019203.1

Gene Sequence

>MsaT019203.1

ATGAGGAATAACAAGTTTAAGCTATCAGATATGATTCCCAATGCTTGTTGTCGAACGACGCTTGAATCAGTGTGGACAAAATCAGATTCTCCTCATGAAAACTCTTCTTCTTCTCCACTTGATAGTTTAACTGAATCAGAGTCCCCTGACCCTGAATTCAGGACCGACCGTGTTCTGATACCAACTGAACCATCGTTCGATGAAATGGTTTCATTAACCACTTCTTCTTGTTCTTGCAACAAAATCTCCAACAACAACAACAACAACAATATAGATATTGTTATTGATGTTGATAAAAATTCTCTAGCTAGAAAAGATGATAAACTTGAAGGGTATGATTATTCATATGATTCTTTTTCAAAGCTTGAACTTCCTCCTATCATTACAAAACCAACCATGAAAAATGAGCACAAACCCTTCAAACAAGAGTCTCTCAAGATTAAAATCATGAATGAACAACAACAGAAGAAGAAGAATAACAAGAAGAAGAAAAATGGTTCTGTAAATTCACCTGGAGTGAAACTTCGTATAAAATCTCCAAGAATTGTTCAGTTTCATCATGGCCGGAAAAGTGTGTCATCGACGGTGAATTCCGGCTATCGGAGAAGCTTCTCCGGTAGTCTAGCAATAGTGAAGTCATCTTTTAATCCTCAGAAGGATTTTAGAGAGTCAATGGTGGAGATGATTGTGGAGAATAACATAAGAGCATCAAAGGATTTGGAAGATCTTCTTGCTTGTTATCTTTCTTTGAATTCAGATGAGTATCATGATCTTATTATCAAGGTATTCAAGCAAATATGGTTTGATTTGACTGAAACAGGGTAG

Protein sequence

>MsaT019203.1

MRNNKFKLSDMIPNACCRTTLESVWTKSDSPHENSSSSPLDSLTESESPDPEFRTDRVLIPTEPSFDEMVSLTTSSCSCNKISNNNNNNNIDIVIDVDKNSLARKDDKLEGYDYSYDSFSKLELPPIITKPTMKNEHKPFKQESLKIKIMNEQQQKKKNNKKKKNGSVNSPGVKLRIKSPRIVQFHHGRKSVSSTVNSGYRRSFSGSLAIVKSSFNPQKDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTETG*