AlfalfaGEDB | MsaG019281

M. sativa ssp. caerulea / MsaG019281

KEGG: K17541 K20177
GO: GO:0002090 GO:0002092 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0006810 GO:0006897 GO:0006898 GO:0007034 GO:0007041 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008333 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0010604 GO:0010646 GO:0010648 GO:0016055 GO:0016192 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0030100 GO:0030111 GO:0030178 GO:0031323 GO:0031325 GO:0031623 GO:0032879 GO:0043112 GO:0043170 GO:0044237 GO:0044260 GO:0045807 GO:0046907 GO:0048259 GO:0048260 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060070 GO:0060255 GO:0060627 GO:0060828 GO:0065007 GO:0071704 GO:0090090 GO:0098657 GO:0198738 GO:1905114 GO:2000286 GO:2000369 GO:2000370
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019281	XP_003605398.2	97.198	928	26	0	1	928	1	928	0.0	1863

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019281	sp\|F4I313\|SCY2A_ARATH	65.823	948	268	13	1	927	1	913	0.0	1224

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019281	tr\|G7JKS9\|G7JKS9_MEDTR	97.198	928	26	0	1	928	1	928	0.0	1863

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019281	MtrunA17_Chr4g0013741	97.094	929	26	1	1	928	1	929	0.0	1859
MsaG019281	MtrunA17_Chr6g0485441	22.593	509	334	11	96	585	58	525	6.86e-24	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019281	AT1G22870.1	65.823	948	268	13	1	927	1	913	0.0	1224
MsaG019281	AT1G71410.1	64.957	936	292	13	1	927	1	909	0.0	1193
MsaG019281	AT1G71410.2	64.957	936	292	13	1	927	1	909	0.0	1193
MsaG019281	AT1G22870.4	68.496	838	224	8	1	827	1	809	0.0	1176
MsaG019281	AT1G22870.3	62.835	783	235	13	166	927	1	748	0.0	944
MsaG019281	AT1G22870.2	61.613	719	220	13	230	927	9	692	0.0	832
MsaG019281	AT2G40730.1	22.528	617	394	17	40	630	18	576	3.29e-20	97.1

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Find 245 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATTGGTAGAATCAT+CGG	0.526198	4:+26074608	None:intergenic
AAAAGCATCCTCAGCCGCCT+TGG	0.481850	4:+26082579	None:intergenic
AAACTATCTCCTGCAGTTAA+CGG	0.459043	4:-26070842	MsaT019281.1:CDS
AAAGGGCGGGGAAGAGGCAG+AGG	0.302195	4:-26070047	MsaT019281.1:CDS
AAATAGAATTTGCAACCCCA+AGG	0.546112	4:+26071289	None:intergenic
AACACCCAAACGCAAACAAC+CGG	0.436701	4:+26082646	None:intergenic
AACCACAGTGGGTAAAGGGC+GGG	0.509852	4:-26070060	MsaT019281.1:CDS
AACCCCAAGGGTACACATAA+GGG	0.498164	4:+26071302	None:intergenic
AACCCTTATGTGTACCCTTG+GGG	0.539200	4:-26071304	MsaT019281.1:CDS
AAGAACCCAAGAGAACTCTG+AGG	0.741155	4:+26070218	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	26069971	26082878	26069971	ID=MsaG019281
Chr4	mRNA	26069971	26082878	26069971	ID=MsaT019281.1;Parent=MsaG019281
Chr4	exon	26069971	26070919	26069971	ID=MsaT019281.1.exon14;Parent=MsaT019281.1
Chr4	CDS	26069971	26070919	26069971	ID=cds.MsaT019281.1;Parent=MsaT019281.1
Chr4	exon	26071052	26071170	26071052	ID=MsaT019281.1.exon13;Parent=MsaT019281.1
Chr4	CDS	26071052	26071170	26071052	ID=cds.MsaT019281.1;Parent=MsaT019281.1
Chr4	exon	26071281	26071442	26071281	ID=MsaT019281.1.exon12;Parent=MsaT019281.1
Chr4	CDS	26071281	26071442	26071281	ID=cds.MsaT019281.1;Parent=MsaT019281.1
Chr4	exon	26072553	26072615	26072553	ID=MsaT019281.1.exon11;Parent=MsaT019281.1
Chr4	CDS	26072553	26072615	26072553	ID=cds.MsaT019281.1;Parent=MsaT019281.1
Chr4	exon	26073613	26073741	26073613	ID=MsaT019281.1.exon10;Parent=MsaT019281.1
Chr4	CDS	26073613	26073741	26073613	ID=cds.MsaT019281.1;Parent=MsaT019281.1
Chr4	exon	26073844	26073957	26073844	ID=MsaT019281.1.exon9;Parent=MsaT019281.1
Chr4	CDS	26073844	26073957	26073844	ID=cds.MsaT019281.1;Parent=MsaT019281.1
Chr4	exon	26074589	26074675	26074589	ID=MsaT019281.1.exon8;Parent=MsaT019281.1
Chr4	CDS	26074589	26074675	26074589	ID=cds.MsaT019281.1;Parent=MsaT019281.1
Chr4	exon	26075493	26075579	26075493	ID=MsaT019281.1.exon7;Parent=MsaT019281.1
Chr4	CDS	26075493	26075579	26075493	ID=cds.MsaT019281.1;Parent=MsaT019281.1
Chr4	exon	26075676	26075737	26075676	ID=MsaT019281.1.exon6;Parent=MsaT019281.1
Chr4	CDS	26075676	26075737	26075676	ID=cds.MsaT019281.1;Parent=MsaT019281.1
Chr4	exon	26077506	26077632	26077506	ID=MsaT019281.1.exon5;Parent=MsaT019281.1
Chr4	CDS	26077506	26077632	26077506	ID=cds.MsaT019281.1;Parent=MsaT019281.1
Chr4	exon	26078262	26078444	26078262	ID=MsaT019281.1.exon4;Parent=MsaT019281.1
Chr4	CDS	26078262	26078444	26078262	ID=cds.MsaT019281.1;Parent=MsaT019281.1
Chr4	exon	26080797	26080904	26080797	ID=MsaT019281.1.exon3;Parent=MsaT019281.1
Chr4	CDS	26080797	26080904	26080797	ID=cds.MsaT019281.1;Parent=MsaT019281.1
Chr4	exon	26081157	26081261	26081157	ID=MsaT019281.1.exon2;Parent=MsaT019281.1
Chr4	CDS	26081157	26081261	26081157	ID=cds.MsaT019281.1;Parent=MsaT019281.1
Chr4	exon	26082387	26082878	26082387	ID=MsaT019281.1.exon1;Parent=MsaT019281.1
Chr4	CDS	26082387	26082878	26082387	ID=cds.MsaT019281.1;Parent=MsaT019281.1

Gene Sequence

>MsaT019281.1

ATGTCCCTAAACATGAAAACCCTAACCCAAGCCTTCGCAAAAACCGCAACCCTAATAGAAAAAACCGTTTCAACAACCGTTCAAGAAGTAACAGGTCCAAAGCCTCTTCAAGACTACGACCTTCTCCACCAGATCGGTTCCGCCGGTCCCGCTTTAGCCTGGAAGCTTTACTCCGCCAAATCACGCGATCCGTCTCGGCAGCATCAGTATCCGGTTGTTTGCGTTTGGGTGTTGGATAAAAAGGCGTTGTCGGAGGCGAGATTGAAGGCTGGATTGACCAAGGCGGCTGAGGATGCTTTTTTGGATTTGATTAGGATGGATGCTGGGAAGATGGTTAGGTTGAGACATCCTGGGATTGTGCATGTTGTTCAAGGGTTGGATGAGAGTAAGAATGCGATGGCGATGGTTACTGAACCGTTGTTTGCTTCCGTTGCGAATACTCTTGGGAAGCTTGATAATGTTCAAAGTGTTCCTAAGGATCTTAAGGGAATGGAAATGGGATTGTTGGAGGTGAAGCATGGTTTACTTCAGATTGCGGAGTCGTTGGATTTTCTCCACAACCATGCCCATCTTATTCATCGAGCTATAGCACCCGAGAATGTTTTTATCACATTGAGTGGAGCCTGGAAACTTGGTGGATTTGGTTTTGCAATTTCTTCTCAGAACACTGGTGACTCATCTAATCTGCATGCTTTCCATTATGCTGAATATGATGTTGAAGACTCTGTTTTGCCACTTCAGCCATCCATTAATTACACTGCTCCTGAGATGGTGAGGAGCACCACTTCTTCAGCTGGGTGCTATTCTGATATTTTCAGTTTTGGATGTCTTGCCTACCATTTAATTGCTCGCAAGCCTTTGTTTGACTGCAACAACAATGTCAAGATGTACATGAATACATTGACTTACTTATCCAGTGATGCTTTCTCATCTATCCCATCGGATCTGGTTCCTGACTTGCAAAGGATGCTCTCTTCAAATGAATCTTTCAGGCCAAGTGCAATGGATTTTACAGGCTCACCATTTTTTCGGAATGACACTAGGTTACGTGCTCTGCGTTTCCTGGACCACATGCTTGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCCCGTGTATTACGATACAAGGTCCTTCCACCACTTTGTGCAGAACTTAGGAATGTCGTTATACAACCGATGATTCTACCAATGGTTTTAACCATTGCAGAGTCTCAGGACAAGAATGACTTTGAGCAATCAACACTTCCAGCCCTTGTCCCTGTCTTAAGCACTGCTTCTGGTGATACAATGCTACTGCTTCTGAAGCACGCCGAGCTAATAATAAACAAGACTAGTCAAGACCATTTAATTTCACATGTTCTTCCAATGATTGTTCGAGCCTATGATGATAATGATTCACGTTTACAAGAAGAGGTGTTGAAAAAGTCGGTATCCCTTGCCAAAGAACTTGATACCCAGCTGGTGAAACAAGTGATTTTACCACGTGTTCATGGACTAGCACTGAAAACAACAGTTGCTGCGGTTAGAGTCAATGCTTTGCTTTGCCTAGGAGACATGGTCAACCGACTTGATAAACATGCTGTCCTGGAAATCTTGCAAACTATTCAGCGTTGCACTGCTGTTGACCGCTCTCCTCCAACCCTTATGTGTACCCTTGGGGTTGCAAATTCTATTTTTAAGCAGTATGGAGTAGAATTTGTTGCTGAGCATGTTCTTCCATTGCTTATGCCACTCCTGACTGCTCAACAGCTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGAATATCCTCCATAAGATAGAAGAGAAGCGAGGAGTTGCTGTGACTGATTCTGGAATCCCAGAGGTAAAACTATCTCCTGCAGTTAACGGCCTTCAGGTGGAAGCTCCAAGGACAACCAGCAGCACCGTTGCTTCAACAAAAAGCAGCTTCTCTTGGGATGCAGATTGGGGTCCTAAAGCAACGGGCCCCACCAATTCTGTCCAGAATTCTATTAATACATCTAATAAATCTGTGATAGGAAACCCTGTGGGTCAAGTAACATCCATACAAAATAATTTGCCCTTATCTGGTGTATCTAATCAGCAAACATCCAATTCATGTCCTTCAGTAGATATAGAGTGGCCGCCTCGTGCATCTTCTGGTCTTACCTCACAATTTGGTGATACTGAAAGGAAAACAGTTGCAGCTGGAACCTCATCCACATCCATTATTGAAGATGACGATCCTTTTGCTGATTGGCCTCCACGCCCTAGTGGTTCATTATCCGGTGCATCTGGAAATTCCAACAATGGTATTTCAGGAATGGCATTAAACAAGATAGGGCATAATTCAATGACAAGCAATTTAAGCAATCTTGGTCTCCAGGCCAGCAACAATTGGTCTGCCAAGTCCCAAAATTCTGTGGAGTCTATTGGTTTGAACCCAAGGAATGCTAGCTCATCTATCAGTAACCTGAACAATGGCTTTGAACCTCAGAGTTCTCTTGGGTTCTTGAAACAAAGTCAGGCTTTTCCGGCATCAAATGTTGTTTCATCATCATATAATAATGTTAAATCAACTGATCTTGGATCAATATTTTCTTCCAACAAGAATGAACAACTTGCACCTAGACTCGCACCACCCCCTTCAACCACAGTGGGTAAAGGGCGGGGAAGAGGCAGAGGAGCAACTTCATCCAGACAGCACTCTCATACCAAGTCAAGCACTGAGCAGCCACCCCTTTTGGATTTGTTGGGGTAA

Protein sequence

>MsaT019281.1

MSLNMKTLTQAFAKTATLIEKTVSTTVQEVTGPKPLQDYDLLHQIGSAGPALAWKLYSAKSRDPSRQHQYPVVCVWVLDKKALSEARLKAGLTKAAEDAFLDLIRMDAGKMVRLRHPGIVHVVQGLDESKNAMAMVTEPLFASVANTLGKLDNVQSVPKDLKGMEMGLLEVKHGLLQIAESLDFLHNHAHLIHRAIAPENVFITLSGAWKLGGFGFAISSQNTGDSSNLHAFHYAEYDVEDSVLPLQPSINYTAPEMVRSTTSSAGCYSDIFSFGCLAYHLIARKPLFDCNNNVKMYMNTLTYLSSDAFSSIPSDLVPDLQRMLSSNESFRPSAMDFTGSPFFRNDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNVVIQPMILPMVLTIAESQDKNDFEQSTLPALVPVLSTASGDTMLLLLKHAELIINKTSQDHLISHVLPMIVRAYDDNDSRLQEEVLKKSVSLAKELDTQLVKQVILPRVHGLALKTTVAAVRVNALLCLGDMVNRLDKHAVLEILQTIQRCTAVDRSPPTLMCTLGVANSIFKQYGVEFVAEHVLPLLMPLLTAQQLNVQQFAKYMLFVKNILHKIEEKRGVAVTDSGIPEVKLSPAVNGLQVEAPRTTSSTVASTKSSFSWDADWGPKATGPTNSVQNSINTSNKSVIGNPVGQVTSIQNNLPLSGVSNQQTSNSCPSVDIEWPPRASSGLTSQFGDTERKTVAAGTSSTSIIEDDDPFADWPPRPSGSLSGASGNSNNGISGMALNKIGHNSMTSNLSNLGLQASNNWSAKSQNSVESIGLNPRNASSSISNLNNGFEPQSSLGFLKQSQAFPASNVVSSSYNNVKSTDLGSIFSSNKNEQLAPRLAPPPSTTVGKGRGRGRGATSSRQHSHTKSSTEQPPLLDLLG*