Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG019295 | AES87618.2 | 98.129 | 695 | 13 | 0 | 1 | 695 | 50 | 744 | 0.0 | 1411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG019295 | sp|O81122|ETR1_MALDO | 85.468 | 695 | 100 | 1 | 2 | 695 | 1 | 695 | 0.0 | 1231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG019295 | tr|G7JKV2|G7JKV2_MEDTR | 98.129 | 695 | 13 | 0 | 1 | 695 | 50 | 744 | 0.0 | 1411 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG019295 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG019295 | MtrunA17_Chr4g0013831 | 98.129 | 695 | 13 | 0 | 1 | 695 | 1 | 695 | 0.0 | 1409 |
| MsaG019295 | MtrunA17_Chr7g0269631 | 73.760 | 625 | 160 | 2 | 1 | 623 | 1 | 623 | 0.0 | 905 |
| MsaG019295 | MtrunA17_Chr1g0186431 | 41.926 | 706 | 382 | 16 | 5 | 697 | 29 | 719 | 3.38e-166 | 496 |
| MsaG019295 | MtrunA17_Chr7g0274831 | 39.747 | 712 | 388 | 16 | 5 | 697 | 34 | 723 | 5.44e-155 | 467 |
| MsaG019295 | MtrunA17_Chr1g0190021 | 38.256 | 711 | 401 | 18 | 3 | 694 | 26 | 717 | 9.25e-147 | 446 |
| MsaG019295 | MtrunA17_Chr1g0168161 | 38.014 | 705 | 415 | 13 | 5 | 697 | 28 | 722 | 2.02e-143 | 437 |
| MsaG019295 | MtrunA17_Chr3g0122391 | 29.006 | 362 | 210 | 7 | 335 | 655 | 431 | 786 | 8.34e-36 | 145 |
| MsaG019295 | MtrunA17_Chr8g0377481 | 29.428 | 367 | 214 | 8 | 335 | 663 | 383 | 742 | 1.02e-35 | 145 |
| MsaG019295 | MtrunA17_Chr3g0136601 | 30.409 | 342 | 176 | 9 | 300 | 600 | 331 | 651 | 2.01e-33 | 137 |
| MsaG019295 | MtrunA17_Chr5g0447641 | 28.736 | 348 | 203 | 5 | 338 | 646 | 611 | 952 | 2.18e-29 | 125 |
| MsaG019295 | MtrunA17_Chr5g0405701 | 30.640 | 297 | 178 | 6 | 334 | 605 | 499 | 792 | 5.76e-29 | 124 |
| MsaG019295 | MtrunA17_Chr8g0392301 | 29.235 | 366 | 195 | 8 | 338 | 646 | 377 | 735 | 2.23e-28 | 122 |
| MsaG019295 | MtrunA17_Chr8g0371601 | 31.321 | 265 | 159 | 3 | 334 | 575 | 461 | 725 | 6.79e-28 | 120 |
| MsaG019295 | MtrunA17_Chr1g0150511 | 33.846 | 195 | 121 | 4 | 300 | 493 | 337 | 524 | 3.38e-24 | 108 |
| MsaG019295 | MtrunA17_Chr1g0194741 | 25.253 | 297 | 164 | 7 | 312 | 562 | 367 | 651 | 1.56e-14 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG019295 | AT1G66340.1 | 81.466 | 696 | 123 | 3 | 2 | 695 | 1 | 692 | 0.0 | 1156 |
| MsaG019295 | AT2G40940.1 | 70.439 | 592 | 175 | 0 | 2 | 593 | 1 | 592 | 0.0 | 848 |
| MsaG019295 | AT3G23150.1 | 38.866 | 723 | 385 | 19 | 5 | 695 | 32 | 729 | 1.09e-142 | 436 |
| MsaG019295 | AT3G04580.2 | 38.149 | 713 | 410 | 17 | 4 | 697 | 26 | 726 | 3.48e-138 | 424 |
| MsaG019295 | AT3G04580.1 | 38.149 | 713 | 410 | 17 | 4 | 697 | 26 | 726 | 3.48e-138 | 424 |
| MsaG019295 | AT3G23150.2 | 40.981 | 571 | 312 | 13 | 5 | 562 | 32 | 590 | 1.69e-125 | 386 |
| MsaG019295 | AT1G04310.1 | 38.966 | 503 | 282 | 9 | 5 | 492 | 34 | 526 | 8.21e-97 | 312 |
| MsaG019295 | AT1G04310.2 | 38.966 | 503 | 282 | 9 | 5 | 492 | 34 | 526 | 8.21e-97 | 312 |
| MsaG019295 | AT5G10720.1 | 33.798 | 287 | 164 | 8 | 323 | 590 | 339 | 618 | 8.07e-38 | 151 |
| MsaG019295 | AT1G27320.1 | 27.358 | 424 | 261 | 8 | 304 | 693 | 410 | 820 | 2.90e-35 | 144 |
| MsaG019295 | AT5G35750.1 | 29.714 | 350 | 202 | 6 | 335 | 646 | 578 | 921 | 5.55e-33 | 137 |
| MsaG019295 | AT2G01830.1 | 28.732 | 355 | 203 | 6 | 338 | 646 | 443 | 793 | 1.42e-30 | 129 |
| MsaG019295 | AT2G01830.4 | 28.732 | 355 | 203 | 6 | 338 | 646 | 443 | 793 | 1.42e-30 | 129 |
| MsaG019295 | AT2G01830.6 | 28.732 | 355 | 203 | 6 | 338 | 646 | 443 | 793 | 1.42e-30 | 129 |
| MsaG019295 | AT2G01830.3 | 28.732 | 355 | 203 | 6 | 338 | 646 | 443 | 793 | 1.42e-30 | 129 |
| MsaG019295 | AT2G01830.5 | 28.732 | 355 | 203 | 6 | 338 | 646 | 455 | 805 | 1.47e-30 | 129 |
| MsaG019295 | AT2G01830.2 | 28.732 | 355 | 203 | 6 | 338 | 646 | 466 | 816 | 1.51e-30 | 129 |
| MsaG019295 | AT2G17820.1 | 30.293 | 307 | 187 | 7 | 314 | 598 | 472 | 773 | 5.02e-29 | 124 |
| MsaG019295 | AT2G47430.1 | 28.296 | 311 | 179 | 10 | 318 | 592 | 373 | 675 | 7.65e-18 | 89.0 |
| MsaG019295 | AT4G16250.1 | 23.140 | 242 | 159 | 7 | 330 | 567 | 918 | 1136 | 1.90e-12 | 71.6 |
Find 144 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAATTAGAAAGATTT+AGG | 0.173765 | 4:-26243463 | None:intergenic |
| CCATGATTTACTAGAGCTTT+AGG | 0.235011 | 4:-26244970 | None:intergenic |
| AGAACACAAAGTGGTGTTTA+TGG | 0.240426 | 4:+26245947 | MsaT019295.1:CDS |
| CTGGGGCAGTAGTTGCTATT+CGG | 0.247378 | 4:+26243432 | MsaT019295.1:CDS |
| CAACACATCTAATAAATTTA+TGG | 0.259500 | 4:+26242901 | MsaT019295.1:CDS |
| AAGGGGCTGCTTATGCATTT+AGG | 0.264466 | 4:+26245870 | MsaT019295.1:CDS |
| TTGGGCTTGCAATTTGTAAA+AGG | 0.274774 | 4:+26244710 | MsaT019295.1:CDS |
| CTAATATCGCGGAAGGATTC+AGG | 0.288662 | 4:-26244424 | None:intergenic |
| ATCTCATGGAAGGACATATT+TGG | 0.289745 | 4:+26244851 | MsaT019295.1:CDS |
| AGCTAGAAATTATGCTTTGA+TGG | 0.301682 | 4:+26243508 | MsaT019295.1:CDS |
| CAGCGGTATTTCCATATAGA+TGG | 0.309124 | 4:+26242838 | MsaT019295.1:CDS |
| GTTCTTGTCATGGATGATAA+TGG | 0.309504 | 4:+26245018 | MsaT019295.1:CDS |
| CATGGATCTACCAACATTTC+CGG | 0.309677 | 4:+26244988 | MsaT019295.1:CDS |
| TACACTTGTCAACGATGTTT+TGG | 0.314116 | 4:+26244023 | MsaT019295.1:CDS |
| AATCCTGTTGGAAGTGGGCT+TGG | 0.319738 | 4:+26244691 | MsaT019295.1:CDS |
| TGAACAAGGACCCATCTATA+TGG | 0.340257 | 4:-26242849 | None:intergenic |
| CAAATTCTTCTCAATGTTGT+TGG | 0.342418 | 4:+26244343 | MsaT019295.1:CDS |
| TTGATCACAGGAAGATTAAT+AGG | 0.343944 | 4:-26243323 | None:intergenic |
| TTGTGGCTCAATACAATTGC+AGG | 0.351088 | 4:-26242709 | None:intergenic |
| CGGTAGAACTCTTGGGTTAG+AGG | 0.352498 | 4:+26243211 | MsaT019295.1:CDS |
| ACATTATAGGTAAAAGATTC+AGG | 0.366131 | 4:+26244595 | MsaT019295.1:intron |
| GCAAACTTAGTGAATAACTT+TGG | 0.366968 | 4:-26244643 | None:intergenic |
| CTTGGTACTGGTAGGAAATC+AGG | 0.368046 | 4:-26244451 | None:intergenic |
| TGAGGTCGTAATCGAGCAAC+TGG | 0.368149 | 4:-26243392 | None:intergenic |
| GCAAAATGTTGCACTTGATA+TGG | 0.370183 | 4:+26243819 | MsaT019295.1:CDS |
| ACATTTCGCATCAGATTTGC+CGG | 0.371012 | 4:+26244288 | MsaT019295.1:CDS |
| TAAGGTAGTTTATGTTCATT+TGG | 0.378697 | 4:-26244943 | None:intergenic |
| TTATGGATGCCGACACGTAC+TGG | 0.379232 | 4:+26243242 | MsaT019295.1:CDS |
| ATTCGTACGCAGGAAGAAAC+TGG | 0.381848 | 4:+26243107 | MsaT019295.1:CDS |
| TGGGGCAGTAGTTGCTATTC+GGG | 0.384904 | 4:+26243433 | MsaT019295.1:CDS |
| GCAGAACCCTGTTGGATATA+CGG | 0.385559 | 4:+26243298 | MsaT019295.1:CDS |
| GTTGAACTCGGTAGAACTCT+TGG | 0.392589 | 4:+26243203 | MsaT019295.1:CDS |
| AGATGGGTCCTTGTTCAGTT+TGG | 0.394532 | 4:+26242855 | MsaT019295.1:CDS |
| ATCCTGTTGGAAGTGGGCTT+GGG | 0.398452 | 4:+26244692 | MsaT019295.1:CDS |
| CAACAGGTTTAATCAAGTTA+AGG | 0.407192 | 4:-26244237 | None:intergenic |
| TTATGTTCATTTGGACGGTC+CGG | 0.408158 | 4:-26244934 | None:intergenic |
| GATGTTTGTACAGGGTTAGA+TGG | 0.409988 | 4:+26245969 | MsaT019295.1:CDS |
| TGCGGAGCTTGATAGAGAAA+TGG | 0.412888 | 4:+26243079 | MsaT019295.1:CDS |
| TGCACTCTCTTCATTGATGC+AGG | 0.414560 | 4:+26243933 | MsaT019295.1:CDS |
| TGGATTGAAAGCGAAGGTAT+TGG | 0.423019 | 4:+26244871 | MsaT019295.1:CDS |
| CGGCCTCAAGGTTCTTGTCA+TGG | 0.425638 | 4:+26245008 | MsaT019295.1:CDS |
| TTCTTGTCATGGATGATAAT+GGG | 0.431607 | 4:+26245019 | MsaT019295.1:CDS |
| ATAGGTACCGTATATCCAAC+AGG | 0.432791 | 4:-26243305 | None:intergenic |
| GTGTTTATGGATGTTTGTAC+AGG | 0.434579 | 4:+26245960 | MsaT019295.1:CDS |
| CATGCTGCAAAATACATGCC+TGG | 0.434848 | 4:+26243413 | MsaT019295.1:CDS |
| TTGAACTCGGTAGAACTCTT+GGG | 0.435191 | 4:+26243204 | MsaT019295.1:CDS |
| GAATAATATGTACAAGCATA+AGG | 0.435805 | 4:-26243007 | None:intergenic |
| ACTAGAGCTTTAGGTTTGTA+AGG | 0.436633 | 4:-26244961 | None:intergenic |
| AGTTCACAAAACGTCAAGAT+AGG | 0.437386 | 4:+26246021 | MsaT019295.1:CDS |
| TAGGTAAAAGATTCAGGATC+AGG | 0.440352 | 4:+26244601 | MsaT019295.1:intron |
| GACTGCTGAGCAACGTCTAA+TGG | 0.441775 | 4:+26243966 | MsaT019295.1:CDS |
| GGTTAGAGGAATGTGCGTTA+TGG | 0.446709 | 4:+26243225 | MsaT019295.1:CDS |
| TAGAAGAGTCAATGAGGGCT+AGG | 0.449726 | 4:+26243782 | MsaT019295.1:CDS |
| GCCACTTATAGTTGCTCTTA+CGG | 0.452782 | 4:+26246043 | MsaT019295.1:CDS |
| CCTAAAGCTCTAGTAAATCA+TGG | 0.454091 | 4:+26244970 | MsaT019295.1:CDS |
| TGAAGAAATCTGATATGTAT+TGG | 0.455213 | 4:-26242761 | None:intergenic |
| GCTGTTAAGTTCACAAAAGA+AGG | 0.457297 | 4:+26244370 | MsaT019295.1:CDS |
| AGCCCAAGCCCACTTCCAAC+AGG | 0.466376 | 4:-26244694 | None:intergenic |
| TATGTTCATTTGGACGGTCC+GGG | 0.471284 | 4:-26244933 | None:intergenic |
| CAAACTTAGTGAATAACTTT+GGG | 0.476701 | 4:-26244642 | None:intergenic |
| CCTCTCTAAACAATGAATGA+AGG | 0.477023 | 4:-26244098 | None:intergenic |
| GCGGAGCTTGATAGAGAAAT+GGG | 0.487897 | 4:+26243080 | MsaT019295.1:CDS |
| ATGCTGCAAAATACATGCCT+GGG | 0.488762 | 4:+26243414 | MsaT019295.1:CDS |
| AACCTTGAGGCCGGAAATGT+TGG | 0.492566 | 4:-26244998 | None:intergenic |
| TTCATCAATAAATCATCTGC+TGG | 0.499714 | 4:-26242735 | None:intergenic |
| AATAATATGTACAAGCATAA+GGG | 0.501867 | 4:-26243006 | None:intergenic |
| TCCGTAAGAGCAACTATAAG+TGG | 0.509398 | 4:-26246044 | None:intergenic |
| GATCTTTCACGGCTTGAAGA+TGG | 0.509985 | 4:+26244045 | MsaT019295.1:CDS |
| GGTGCCTTCATAGTTCTATG+TGG | 0.510808 | 4:+26242876 | MsaT019295.1:CDS |
| GTGAGTAGGTCAGCAACAAA+GGG | 0.511061 | 4:+26245852 | MsaT019295.1:CDS |
| AAATAAAAGTGGCCATCACT+TGG | 0.516449 | 4:-26244469 | None:intergenic |
| GTTAGATGGTTATGAATTAG+CGG | 0.517611 | 4:+26245983 | MsaT019295.1:CDS |
| CATTGTAAAACTCGGAATCC+CGG | 0.521822 | 4:+26244915 | MsaT019295.1:CDS |
| ACTTGTAATGCAGGGTGAGT+AGG | 0.526253 | 4:+26245838 | MsaT019295.1:intron |
| GTAGTTTATGTTCATTTGGA+CGG | 0.527033 | 4:-26244939 | None:intergenic |
| AAGTGGCCATCACTTGGTAC+TGG | 0.531856 | 4:-26244463 | None:intergenic |
| TCATCACCAATCGCATGCAC+CGG | 0.532851 | 4:-26244307 | None:intergenic |
| GGTGAGTAGGTCAGCAACAA+AGG | 0.533914 | 4:+26245851 | MsaT019295.1:CDS |
| CTAAGATTGCAGCATGCGAA+AGG | 0.538313 | 4:-26243762 | None:intergenic |
| GAAAGCGAAGGTATTGGTAA+AGG | 0.545327 | 4:+26244877 | MsaT019295.1:CDS |
| CACTGCAGTTAAAACCTTGG+CGG | 0.545967 | 4:-26242967 | None:intergenic |
| ACAAAGTAGATAAGCTCGAG+AGG | 0.549911 | 4:-26242807 | None:intergenic |
| AAATCATCTGCTGGCCATTG+TGG | 0.550408 | 4:-26242726 | None:intergenic |
| TAAGATTGCAGCATGCGAAA+GGG | 0.550545 | 4:-26243761 | None:intergenic |
| TACCAACATTTCCGGCCTCA+AGG | 0.553478 | 4:+26244996 | MsaT019295.1:CDS |
| TATGGATGCCGACACGTACT+GGG | 0.553493 | 4:+26243243 | MsaT019295.1:CDS |
| GCCACTTTCATTGTAAAACT+CGG | 0.554108 | 4:+26244907 | MsaT019295.1:CDS |
| GAGGGCTAGGGATCAACTCA+TGG | 0.554891 | 4:+26243795 | MsaT019295.1:CDS |
| CCTGTACTCGCAAATAAAAG+TGG | 0.556232 | 4:-26244480 | None:intergenic |
| CCTTCATTCATTGTTTAGAG+AGG | 0.557200 | 4:+26244098 | MsaT019295.1:CDS |
| TACCACTGCAGTTAAAACCT+TGG | 0.563298 | 4:-26242970 | None:intergenic |
| TAATTTCTAGCTGAAACCTC+AGG | 0.567327 | 4:-26243497 | None:intergenic |
| CGAATAGCAACTACTGCCCC+AGG | 0.569883 | 4:-26243431 | None:intergenic |
| GGTCGAGGTAGTTGCTGACC+AGG | 0.570253 | 4:+26243586 | MsaT019295.1:CDS |
| AATGGGTTTGATTCGTACGC+AGG | 0.576988 | 4:+26243097 | MsaT019295.1:CDS |
| CTTTACAACAACCACGGCGA+TGG | 0.577371 | 4:-26244401 | None:intergenic |
| GATTTGCCGGTGCATGCGAT+TGG | 0.577697 | 4:+26244301 | MsaT019295.1:CDS |
| TGCTCCACATAGAACTATGA+AGG | 0.577986 | 4:-26242880 | None:intergenic |
| TGAAGGCACCAAACTGAACA+AGG | 0.580571 | 4:-26242863 | None:intergenic |
| TGCAGTTAAAACCTTGGCGG+TGG | 0.581795 | 4:-26242964 | None:intergenic |
| AGCGGTATTTCCATATAGAT+GGG | 0.582330 | 4:+26242839 | MsaT019295.1:CDS |
| TTGAGACAGCAGAACCCTGT+TGG | 0.584142 | 4:+26243290 | MsaT019295.1:CDS |
| AGGAAATCTAATATCGCGGA+AGG | 0.585020 | 4:-26244431 | None:intergenic |
| AGAAGAGTCAATGAGGGCTA+GGG | 0.586235 | 4:+26243783 | MsaT019295.1:CDS |
| GAGCAGGTTTGTGAATCTCA+TGG | 0.590609 | 4:+26244837 | MsaT019295.1:intron |
| AAATTAGAAAGATTTAGGAG+AGG | 0.591308 | 4:-26243458 | None:intergenic |
| GCATGTACATGAGTTAGAGC+TGG | 0.591900 | 4:+26243565 | MsaT019295.1:CDS |
| TGTTTATGGATGTTTGTACA+GGG | 0.594370 | 4:+26245961 | MsaT019295.1:CDS |
| CATGACAAGAACCTTGAGGC+CGG | 0.595442 | 4:-26245007 | None:intergenic |
| CTAAATACATGATTGATCAC+AGG | 0.597914 | 4:-26243335 | None:intergenic |
| GATGCCGACACGTACTGGGT+TGG | 0.605973 | 4:+26243247 | MsaT019295.1:CDS |
| AATTGTAATGACCACCGCCA+AGG | 0.606041 | 4:+26242953 | MsaT019295.1:CDS |
| GGTTCTTGTGTGAATTGTGA+AGG | 0.610445 | 4:-26242925 | None:intergenic |
| GGTGGTCATTACAATTGCCA+CGG | 0.613246 | 4:-26242946 | None:intergenic |
| TTCCTACCAGTACCAAGTGA+TGG | 0.619110 | 4:+26244457 | MsaT019295.1:CDS |
| AGGTTTGTGAATCTCATGGA+AGG | 0.621756 | 4:+26244841 | MsaT019295.1:intron |
| CTACTTTGTTAAGAAATCAG+CGG | 0.629320 | 4:+26242821 | MsaT019295.1:CDS |
| CATATTTGGATTGAAAGCGA+AGG | 0.630241 | 4:+26244865 | MsaT019295.1:CDS |
| GCAATTGTATTGAGCCACAA+TGG | 0.634157 | 4:+26242712 | MsaT019295.1:CDS |
| TGCTGAGCAACGTCTAATGG+TGG | 0.634295 | 4:+26243969 | MsaT019295.1:CDS |
| AGTGCAATAATTGCATGCAT+CGG | 0.638531 | 4:-26243916 | None:intergenic |
| CACTGTCTAGCACTATCCGA+TGG | 0.639285 | 4:-26243542 | None:intergenic |
| CAATCTTAGAAGAGTCAATG+AGG | 0.640685 | 4:+26243776 | MsaT019295.1:CDS |
| TGTTTCTCTAGAACACAAAG+TGG | 0.642969 | 4:+26245938 | MsaT019295.1:CDS |
| TTCAGGCTTTACAACAACCA+CGG | 0.643393 | 4:-26244407 | None:intergenic |
| CAAAGTAGATAAGCTCGAGA+GGG | 0.643669 | 4:-26242806 | None:intergenic |
| AGCTCCAACCCAGTACGTGT+CGG | 0.649105 | 4:-26243251 | None:intergenic |
| TCAAATATATGATTGGCCTG+AGG | 0.650243 | 4:+26243481 | MsaT019295.1:CDS |
| AAAACGACTCTTGTTGAACT+CGG | 0.650784 | 4:+26243191 | MsaT019295.1:CDS |
| GAGGGATCGAGAAATAAGCA+AGG | 0.659210 | 4:-26242788 | None:intergenic |
| AATCAGGAAATCTAATATCG+CGG | 0.661209 | 4:-26244435 | None:intergenic |
| ACATGAGTTAGAGCTGGTCG+AGG | 0.664742 | 4:+26243571 | MsaT019295.1:CDS |
| AATCTTAGAAGAGTCAATGA+GGG | 0.666677 | 4:+26243777 | MsaT019295.1:CDS |
| AGGCAGCATTTCCATCGCCG+TGG | 0.671963 | 4:+26244390 | MsaT019295.1:CDS |
| GAGGTCGTAATCGAGCAACT+GGG | 0.678441 | 4:-26243391 | None:intergenic |
| TGCTGCAAAATACATGCCTG+GGG | 0.686693 | 4:+26243415 | MsaT019295.1:CDS |
| CACAATTCACACAAGAACCG+TGG | 0.686981 | 4:+26242929 | MsaT019295.1:CDS |
| AGGGATCGAGAAATAAGCAA+GGG | 0.687492 | 4:-26242787 | None:intergenic |
| GGCCATCACTTGGTACTGGT+AGG | 0.695660 | 4:-26244459 | None:intergenic |
| CATCCATGACAAGAACCTTG+AGG | 0.710914 | 4:-26245011 | None:intergenic |
| TGAGTAGGTCAGCAACAAAG+GGG | 0.716938 | 4:+26245853 | MsaT019295.1:CDS |
| CATCGGATAGTGCTAGACAG+TGG | 0.725592 | 4:+26243543 | MsaT019295.1:CDS |
| TAGGTACCGTATATCCAACA+GGG | 0.742536 | 4:-26243304 | None:intergenic |
| GTTCTAGAGAAACAACACGC+AGG | 0.765469 | 4:-26245929 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 26242699 | 26246082 | 26242699 | ID=MsaG019295 |
| Chr4 | mRNA | 26242699 | 26246082 | 26242699 | ID=MsaT019295.1;Parent=MsaG019295 |
| Chr4 | exon | 26242699 | 26243607 | 26242699 | ID=MsaT019295.1.exon1;Parent=MsaT019295.1 |
| Chr4 | CDS | 26242699 | 26243607 | 26242699 | ID=cds.MsaT019295.1;Parent=MsaT019295.1 |
| Chr4 | exon | 26243751 | 26244119 | 26243751 | ID=MsaT019295.1.exon2;Parent=MsaT019295.1 |
| Chr4 | CDS | 26243751 | 26244119 | 26243751 | ID=cds.MsaT019295.1;Parent=MsaT019295.1 |
| Chr4 | exon | 26244235 | 26244501 | 26244235 | ID=MsaT019295.1.exon3;Parent=MsaT019295.1 |
| Chr4 | CDS | 26244235 | 26244501 | 26244235 | ID=cds.MsaT019295.1;Parent=MsaT019295.1 |
| Chr4 | exon | 26244604 | 26244731 | 26244604 | ID=MsaT019295.1.exon4;Parent=MsaT019295.1 |
| Chr4 | CDS | 26244604 | 26244731 | 26244604 | ID=cds.MsaT019295.1;Parent=MsaT019295.1 |
| Chr4 | exon | 26244843 | 26245040 | 26244843 | ID=MsaT019295.1.exon5;Parent=MsaT019295.1 |
| Chr4 | CDS | 26244843 | 26245040 | 26244843 | ID=cds.MsaT019295.1;Parent=MsaT019295.1 |
| Chr4 | exon | 26245851 | 26246082 | 26245851 | ID=MsaT019295.1.exon6;Parent=MsaT019295.1 |
| Chr4 | CDS | 26245851 | 26246082 | 26245851 | ID=cds.MsaT019295.1;Parent=MsaT019295.1 |
| Gene Sequence |
| Protein sequence |