AlfalfaGEDB | MsaG019318

M. sativa ssp. caerulea / MsaG019318

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019318	XP_003605525.1	65.801	231	42	2	1	194	1	231	1.33e-98	295

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019318	sp\|Q9FJK3\|AGL80_ARATH	41.250	160	60	1	1	126	1	160	1.28e-29	114

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019318	tr\|G7JN85\|G7JN85_MEDTR	65.801	231	42	2	1	194	1	231	6.37e-99	295

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TFs/TRs:

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Gene ID	Type	Classification
MsaG019318	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000234	MsaG019318	0.809435	3.234164e-50	5.448360e-48
MsaG000364	MsaG019318	0.829682	8.062506e-55	2.312195e-52
MsaG000520	MsaG019318	0.841175	1.033192e-57	4.185412e-55
MsaG001246	MsaG019318	0.836833	1.358782e-56	4.809016e-54
MsaG001281	MsaG019318	0.813227	4.905576e-51	9.070077e-49
MsaG001828	MsaG019318	0.811111	1.412894e-50	2.479140e-48
MsaG002209	MsaG019318	0.830281	5.769391e-55	1.683180e-52
MsaG002405	MsaG019318	0.866341	6.141041e-65	6.121767e-62
MsaG002484	MsaG019318	0.874659	1.174952e-67	1.664693e-64
MsaG002530	MsaG019318	0.832331	1.816672e-55	5.623782e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019318	MtrunA17_Chr4g0014321	65.801	231	42	2	1	194	1	231	1.23e-102	295
MsaG019318	MtrunA17_Chr8g0351751	48.954	239	74	3	1	191	1	239	1.05e-70	214
MsaG019318	MtrunA17_Chr4g0013041	54.455	202	42	3	1	167	1	187	4.36e-67	204
MsaG019318	MtrunA17_Chr4g0014031	45.299	234	83	4	1	194	1	229	2.66e-53	170
MsaG019318	MtrunA17_Chr4g0014131	41.803	244	79	5	1	194	1	231	1.18e-44	147
MsaG019318	MtrunA17_Chr3g0110131	37.553	237	91	4	1	186	1	231	5.88e-42	141
MsaG019318	MtrunA17_Chr4g0014121	48.718	156	45	1	1	121	29	184	7.42e-37	126
MsaG019318	MtrunA17_Chr3g0107381	38.750	160	61	2	1	123	1	160	1.48e-35	124
MsaG019318	MtrunA17_Chr2g0296831	65.591	93	32	0	1	93	1	93	1.79e-34	118
MsaG019318	MtrunA17_Chr3g0107331	52.222	90	43	0	4	93	3	92	7.56e-32	113

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019318	AT5G48670.1	41.250	160	60	1	1	126	1	160	1.31e-30	114
MsaG019318	AT3G05860.2	42.593	108	55	1	1	101	1	108	2.55e-28	105
MsaG019318	AT3G05860.3	42.593	108	55	1	1	101	1	108	6.94e-28	105
MsaG019318	AT3G05860.1	42.593	108	55	1	1	101	1	108	1.10e-27	105
MsaG019318	AT1G65300.1	51.111	90	44	0	4	93	3	92	2.86e-26	102
MsaG019318	AT5G26650.1	50.000	90	45	0	4	93	2	91	2.95e-26	103
MsaG019318	AT5G27960.1	50.000	90	45	0	4	93	2	91	3.41e-26	102
MsaG019318	AT1G65330.1	49.438	89	45	0	5	93	4	92	8.00e-25	98.2
MsaG019318	AT2G28700.1	40.000	90	54	0	1	90	1	90	7.25e-20	85.9
MsaG019318	AT5G27810.1	50.769	65	32	0	29	93	1	65	9.23e-20	80.9

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Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATACAATAGAAGGCGGA+AGG	0.566279	4:+26870791	MsaT019318.1:CDS
AAGAGACTTACATGAAAGAA+AGG	0.463147	4:+26870991	MsaT019318.1:CDS
AAGCAACATACAATAGAAGG+CGG	0.694844	4:+26870787	MsaT019318.1:CDS
AATGAAGAAATGGAAAGGAT+GGG	0.602949	4:+26871246	MsaT019318.1:CDS
AATGTTGTCGCCATTATTCA+TGG	0.384588	4:-26871289	None:intergenic
AATTCAGAACAATGACTGGG+CGG	0.724414	4:+26870943	MsaT019318.1:CDS
AATTGAAGGAGGTTGGTAGA+AGG	0.442772	4:+26871160	MsaT019318.1:CDS
ACATACAATAGAAGGCGGAA+GGG	0.677825	4:+26870792	MsaT019318.1:CDS
AGAATCATCATCGACAATGA+AGG	0.542377	4:-26870760	None:intergenic
AGAGACTTACATGAAAGAAA+GGG	0.577279	4:+26870992	MsaT019318.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	26870735	26871413	26870735	ID=MsaG019318
Chr4	mRNA	26870735	26871413	26870735	ID=MsaT019318.1;Parent=MsaG019318
Chr4	exon	26870735	26871013	26870735	ID=MsaT019318.1.exon1;Parent=MsaT019318.1
Chr4	CDS	26870735	26871013	26870735	ID=cds.MsaT019318.1;Parent=MsaT019318.1
Chr4	exon	26871108	26871413	26871108	ID=MsaT019318.1.exon2;Parent=MsaT019318.1
Chr4	CDS	26871108	26871413	26871108	ID=cds.MsaT019318.1;Parent=MsaT019318.1

Gene Sequence

>MsaT019318.1

ATGACTGGGAAAAAGGTGAAACTTGCCTTCATTGTCGATGATGATTCTAGGAAAGCAACATACAATAGAAGGCGGAAGGGTCTACTGAAGAAGGTTTATGAACTAAGCACTTTGTGTGGAGTTGAAGCTTGTGCAGTAGTTTATGGACCCCATGAGCCTCAACCAGAGATCTGGCCATCACCACAGGGAGTTCAAACGGTGCTCTCAAAATTCAGAACAATGACTGGGCGGAAGAAGAGCAACAAAACGGTTGATCAAGAGACTTACATGAAAGAAAGGAATAATATGTCATTGGTTGATTCAAAACATCTTTGTTGGTTGATTGACCACAAATTGAAGGAGGTTGGTAGAAGGTTGCAAGCAGAGGATAATAGTGGTCAAATTCAAATCCAAATGCCACCACCATTTACATTCAGTAATGAAGAAATGGAAAGGATGGGTTCTGGCAATGCTGGAATGCCCATGAATAATGGCGACAACATTGAAAGTCAATCTTTTATGGGCTTGATGATGAATAGTAATGGAGATGAGTCGGTGCCCTTTGGCGAGGTCGATCCTAGAGTTTTGCAGAATCTACTACCTTAA

Protein sequence

>MsaT019318.1

MTGKKVKLAFIVDDDSRKATYNRRRKGLLKKVYELSTLCGVEACAVVYGPHEPQPEIWPSPQGVQTVLSKFRTMTGRKKSNKTVDQETYMKERNNMSLVDSKHLCWLIDHKLKEVGRRLQAEDNSGQIQIQMPPPFTFSNEEMERMGSGNAGMPMNNGDNIESQSFMGLMMNSNGDESVPFGEVDPRVLQNLLP*