AlfalfaGEDB | MsaG019318

M. sativa ssp. caerulea / MsaG019318

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019318	XP_003605525.1	65.801	231	42	2	1	194	1	231	1.33e-98	295

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019318	sp\|Q9FJK3\|AGL80_ARATH	41.250	160	60	1	1	126	1	160	1.28e-29	114

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019318	tr\|G7JN85\|G7JN85_MEDTR	65.801	231	42	2	1	194	1	231	6.37e-99	295

TFs/TRs:

Gene ID	Type	Classification
MsaG019318	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000234	MsaG019318	0.809435	3.234164e-50	5.448360e-48
MsaG000364	MsaG019318	0.829682	8.062506e-55	2.312195e-52
MsaG000520	MsaG019318	0.841175	1.033192e-57	4.185412e-55
MsaG001246	MsaG019318	0.836833	1.358782e-56	4.809016e-54
MsaG001281	MsaG019318	0.813227	4.905576e-51	9.070077e-49
MsaG001828	MsaG019318	0.811111	1.412894e-50	2.479140e-48
MsaG002209	MsaG019318	0.830281	5.769391e-55	1.683180e-52
MsaG002405	MsaG019318	0.866341	6.141041e-65	6.121767e-62
MsaG002484	MsaG019318	0.874659	1.174952e-67	1.664693e-64
MsaG002530	MsaG019318	0.832331	1.816672e-55	5.623782e-53
MsaG002731	MsaG019318	0.827035	3.483853e-54	9.272436e-52
MsaG003292	MsaG019318	0.884313	4.581634e-71	1.015009e-67
MsaG003743	MsaG019318	0.886274	8.538893e-72	2.082378e-68
MsaG003740	MsaG019318	0.813781	3.710342e-51	6.956230e-49
MsaG003769	MsaG019318	0.863189	5.902673e-64	5.189848e-61
MsaG004004	MsaG019318	0.814522	2.550155e-51	4.870588e-49
MsaG003938	MsaG019318	0.829471	9.070712e-55	2.585622e-52
MsaG004367	MsaG019318	0.825608	7.589484e-54	1.941331e-51
MsaG004418	MsaG019318	0.831898	2.321679e-55	7.098126e-53
MsaG004465	MsaG019318	0.821302	7.626765e-53	1.736199e-50
MsaG004510	MsaG019318	0.807034	1.045062e-49	1.661866e-47
MsaG005351	MsaG019318	0.843905	1.963345e-58	8.678672e-56
MsaG005455	MsaG019318	0.815508	1.544381e-51	3.023984e-49
MsaG005524	MsaG019318	0.837202	1.094658e-56	3.917802e-54
MsaG005961	MsaG019318	0.868608	1.164399e-65	1.273412e-62
MsaG006156	MsaG019318	0.834704	4.678207e-56	1.553244e-53
MsaG006053	MsaG019318	0.849917	4.521105e-60	2.443312e-57
MsaG006357	MsaG019318	0.822422	4.209578e-53	9.873521e-51
MsaG006425	MsaG019318	0.810680	1.749872e-50	3.038131e-48
MsaG006586	MsaG019318	0.891921	5.658514e-74	1.845393e-70
MsaG006552	MsaG019318	0.854567	2.180717e-61	1.387228e-58
MsaG006701	MsaG019318	0.859673	6.897354e-63	5.296191e-60
MsaG006743	MsaG019318	0.813378	4.545551e-51	8.436186e-49
MsaG006813	MsaG019318	0.860419	4.117084e-63	3.253101e-60
MsaG006910	MsaG019318	0.854150	2.872599e-61	1.800422e-58
MsaG007663	MsaG019318	0.853864	3.470310e-61	2.152876e-58
MsaG007665	MsaG019318	0.801069	1.793976e-48	2.484718e-46
MsaG007753	MsaG019318	0.808023	6.458591e-50	1.051658e-47
MsaG007759	MsaG019318	0.801007	1.847357e-48	2.555101e-46
MsaG008168	MsaG019318	0.885220	2.114391e-71	4.896242e-68
MsaG009772	MsaG019318	0.819934	1.567101e-52	3.440506e-50
MsaG009864	MsaG019318	0.883373	1.014283e-70	2.147017e-67
MsaG010418	MsaG019318	0.875705	5.180986e-68	7.687719e-65
MsaG010445	MsaG019318	0.878999	3.746109e-69	6.456236e-66
MsaG010631	MsaG019318	0.851137	2.061251e-60	1.161811e-57
MsaG010621	MsaG019318	0.822624	3.780471e-53	8.915472e-51
MsaG010703	MsaG019318	0.831096	3.651304e-55	1.090407e-52
MsaG010707	MsaG019318	0.802503	9.140622e-49	1.308041e-46
MsaG010994	MsaG019318	0.836824	1.366019e-56	4.833368e-54
MsaG011587	MsaG019318	0.810375	2.035045e-50	3.507230e-48
MsaG011657	MsaG019318	0.874637	1.194999e-67	1.691528e-64
MsaG011702	MsaG019318	0.842943	3.536893e-58	1.515947e-55
MsaG011749	MsaG019318	0.832620	1.541853e-55	4.813409e-53
MsaG011918	MsaG019318	0.856192	7.370337e-62	4.972060e-59
MsaG012458	MsaG019318	0.906056	5.278650e-80	3.878361e-76
MsaG012461	MsaG019318	0.875503	6.072392e-68	8.929642e-65
MsaG012521	MsaG019318	0.859329	8.739139e-63	6.623905e-60
MsaG012747	MsaG019318	0.869125	7.931468e-66	8.860538e-63
MsaG012765	MsaG019318	0.809817	2.679675e-50	4.556052e-48
MsaG012982	MsaG019318	0.837828	7.578461e-57	2.764760e-54
MsaG013086	MsaG019318	0.804398	3.714787e-49	5.553774e-47
MsaG013708	MsaG019318	0.868041	1.769302e-65	1.890594e-62
MsaG013810	MsaG019318	0.819163	2.344341e-52	5.043796e-50
MsaG015096	MsaG019318	0.859577	7.368309e-63	5.637487e-60
MsaG015329	MsaG019318	0.875804	4.795281e-68	7.147707e-65
MsaG015358	MsaG019318	0.841760	7.254848e-58	2.993810e-55
MsaG016390	MsaG019318	0.818343	3.593094e-52	7.566136e-50
MsaG016528	MsaG019318	0.804140	4.202940e-49	6.246116e-47
MsaG016688	MsaG019318	0.840221	1.831564e-57	7.199574e-55
MsaG016827	MsaG019318	0.849541	5.750267e-60	3.068468e-57
MsaG016906	MsaG019318	0.844253	1.585747e-58	7.089955e-56
MsaG016972	MsaG019318	0.832246	1.907049e-55	5.888959e-53
MsaG017085	MsaG019318	0.818132	4.007035e-52	8.392167e-50
MsaG017380	MsaG019318	0.815806	1.326612e-51	2.617353e-49
MsaG017418	MsaG019318	0.898875	7.905671e-77	3.786530e-73
MsaG017467	MsaG019318	0.846926	3.011288e-59	1.470882e-56
MsaG017658	MsaG019318	0.871216	1.652120e-66	2.015648e-63
MsaG017724	MsaG019318	0.886138	9.598741e-72	2.325449e-68
MsaG017802	MsaG019318	0.815239	1.771803e-51	3.445872e-49
MsaG017905	MsaG019318	0.819502	1.964491e-52	4.264068e-50
MsaG018097	MsaG019318	0.811625	1.093994e-50	1.943886e-48
MsaG018305	MsaG019318	0.811200	1.351927e-50	2.377287e-48
MsaG018726	MsaG019318	0.855832	9.384367e-62	6.247416e-59
MsaG018806	MsaG019318	0.884350	4.438589e-71	9.849521e-68
MsaG018847	MsaG019318	0.823636	2.200875e-53	5.334624e-51
MsaG018863	MsaG019318	0.822049	5.132691e-53	1.191884e-50
MsaG018919	MsaG019318	0.906999	1.935393e-80	1.508228e-76
MsaG018922	MsaG019318	0.851180	2.004151e-60	1.131305e-57
MsaG019031	MsaG019318	0.836443	1.706170e-56	5.968213e-54
MsaG019214	MsaG019318	0.877362	1.395600e-68	2.230874e-65
MsaG019300	MsaG019318	0.918461	3.840242e-86	6.476190e-82
MsaG019318	MsaG019501	0.888341	1.405020e-72	3.800750e-69
MsaG019318	MsaG019492	0.877167	1.630321e-68	2.583072e-65
MsaG019318	MsaG019621	0.811865	9.707452e-51	1.735123e-48
MsaG019318	MsaG019629	0.867380	2.877064e-65	2.992052e-62
MsaG019318	MsaG020016	0.824687	1.249832e-53	3.117100e-51
MsaG019318	MsaG020135	0.853144	5.575629e-61	3.371661e-58
MsaG019318	MsaG020206	0.810448	1.962127e-50	3.387672e-48
MsaG019318	MsaG020312	0.851076	2.144612e-60	1.206244e-57
MsaG019318	MsaG020365	0.887841	2.180126e-72	5.751873e-69
MsaG019318	MsaG020561	0.803241	6.444319e-49	9.379789e-47
MsaG019318	MsaG020578	0.823660	2.172404e-53	5.269090e-51
MsaG019318	MsaG020679	0.802770	8.056769e-49	1.159973e-46
MsaG019318	MsaG020827	0.807146	9.895980e-50	1.577850e-47
MsaG019318	MsaG020894	0.824216	1.611520e-53	3.967790e-51
MsaG019318	MsaG021077	0.872787	4.991513e-67	6.514936e-64
MsaG019318	MsaG021079	0.879934	1.752861e-69	3.153026e-66
MsaG019318	MsaG022478	0.854911	1.735239e-61	1.117402e-58
MsaG019318	MsaG022557	0.810867	1.594319e-50	2.780782e-48
MsaG019318	MsaG022584	0.823653	2.180490e-53	5.287716e-51
MsaG019318	MsaG023907	0.821616	6.458401e-53	1.482502e-50
MsaG019318	MsaG023993	0.859506	7.740909e-63	5.906539e-60
MsaG019318	MsaG024143	0.801254	1.645090e-48	2.288093e-46
MsaG019318	MsaG024150	0.853743	3.759514e-61	2.322206e-58
MsaG019318	MsaG024152	0.854829	1.832173e-61	1.176384e-58
MsaG019318	MsaG024652	0.816184	1.093704e-51	2.178639e-49
MsaG019318	MsaG025160	0.883734	7.478540e-71	1.611105e-67
MsaG019318	MsaG025404	0.820153	1.396921e-52	3.084896e-50
MsaG019318	MsaG025618	0.862775	7.913838e-64	6.846276e-61
MsaG019318	MsaG026770	0.848226	1.327940e-59	6.775706e-57
MsaG019318	MsaG026848	0.875690	5.242304e-68	7.773256e-65
MsaG019318	MsaG027002	0.815421	1.615004e-51	3.155391e-49
MsaG019318	MsaG027054	0.813038	5.393322e-51	9.925086e-49
MsaG019318	MsaG027309	0.830181	6.100251e-55	1.774634e-52
MsaG019318	MsaG027773	0.842525	4.562578e-58	1.929666e-55
MsaG019318	MsaG027816	0.829195	1.057290e-54	2.989867e-52
MsaG019318	MsaG027830	0.803028	7.130205e-49	1.032704e-46
MsaG019318	MsaG028243	0.801551	1.431158e-48	2.004005e-46
MsaG019318	MsaG028255	0.804578	3.408448e-49	5.117041e-47
MsaG019318	MsaG028348	0.807798	7.207427e-50	1.167243e-47
MsaG019318	MsaG028353	0.815680	1.415135e-51	2.783113e-49
MsaG019318	MsaG028553	0.801406	1.531541e-48	2.137564e-46
MsaG019318	MsaG028607	0.885894	1.184706e-71	2.835563e-68
MsaG019318	MsaG028787	0.803762	5.030956e-49	7.411409e-47
MsaG019318	MsaG028801	0.825013	1.048037e-53	2.637257e-51
MsaG019318	MsaG028813	0.853201	5.369132e-61	3.253358e-58
MsaG019318	MsaG028830	0.826316	5.161164e-54	1.346486e-51
MsaG019318	MsaG028950	0.856155	7.555965e-62	5.090370e-59
MsaG019318	MsaG028985	0.875125	8.164573e-68	1.180633e-64
MsaG019318	MsaG029443	0.834223	6.167801e-56	2.018484e-53
MsaG019318	MsaG029873	0.837596	8.689132e-57	3.147513e-54
MsaG019318	MsaG029875	0.822564	3.903388e-53	9.190398e-51
MsaG019318	MsaG030080	0.804290	3.912438e-49	5.834749e-47
MsaG019318	MsaG033702	0.812561	6.851756e-51	1.246000e-48
MsaG019318	MsaG033966	0.878413	6.009185e-69	1.007800e-65
MsaG019318	MsaG034740	0.816063	1.163406e-51	2.310298e-49
MsaG019318	MsaG034790	0.859676	6.885212e-63	5.287386e-60
MsaG019318	MsaG034949	0.848527	1.096956e-59	5.653853e-57
MsaG019318	MsaG034999	0.867953	1.887862e-65	2.009733e-62
MsaG019318	MsaG035120	0.807490	8.375057e-50	1.346311e-47
MsaG019318	MsaG035147	0.868861	9.653151e-66	1.066675e-62
MsaG019318	MsaG035275	0.857471	3.109292e-62	2.198353e-59
MsaG019318	MsaG035323	0.828834	1.291891e-54	3.616412e-52
MsaG019318	MsaG035554	0.822824	3.396957e-53	8.054699e-51
MsaG019318	MsaG035580	0.807822	7.124592e-50	1.154476e-47
MsaG019318	MsaG035569	0.800429	2.419943e-48	3.303795e-46
MsaG019318	MsaG036060	0.837476	9.324304e-57	3.365414e-54
MsaG019318	MsaG036111	0.874940	9.436497e-68	1.353621e-64
MsaG019318	MsaG036130	0.864053	3.191551e-64	2.903669e-61
MsaG019318	MsaG036131	0.865856	8.733893e-65	8.538391e-62
MsaG019318	MsaG036511	0.807371	8.872483e-50	1.422224e-47
MsaG019318	MsaG036701	0.820955	9.161091e-53	2.066459e-50
MsaG019318	MsaG038022	0.876055	3.933002e-68	5.928145e-65
MsaG019318	MsaG039176	0.810261	2.153068e-50	3.700252e-48
MsaG019318	MsaG039591	0.883196	1.176374e-70	2.469258e-67
MsaG019318	MsaG040366	0.825019	1.044421e-53	2.628666e-51
MsaG019318	MsaG040755	0.854792	1.877840e-61	1.204113e-58
MsaG019318	MsaG040835	0.816403	9.775174e-52	1.958104e-49
MsaG019318	MsaG041015	0.824777	1.190570e-53	2.976678e-51
MsaG019318	MsaG041017	0.817540	5.443429e-52	1.122786e-49
MsaG019318	MsaG041019	0.833492	9.378387e-56	3.003709e-53
MsaG019318	MsaG041044	0.828994	1.182628e-54	3.325436e-52
MsaG019318	MsaG041117	0.835359	3.203784e-56	1.084731e-53
MsaG019318	MsaG041172	0.827930	2.129989e-54	5.813451e-52
MsaG019318	MsaG041230	0.824178	1.644472e-53	4.044805e-51
MsaG019318	MsaG041392	0.807933	6.748202e-50	1.096459e-47
MsaG019318	MsaG042225	0.807379	8.839064e-50	1.417153e-47
MsaG019318	MsaG042323	0.801255	1.644599e-48	2.287447e-46
MsaG019318	MsaG043344	0.868823	9.924796e-66	1.095029e-62
MsaG019318	MsaG043828	0.821229	7.926971e-53	1.801082e-50
MsaG019318	MsaG045250	0.811237	1.327260e-50	2.336058e-48
MsaG019318	MsaG045254	0.862638	8.715826e-64	7.499881e-61
MsaG019318	MsaG045309	0.858599	1.441756e-62	1.063132e-59
MsaG019318	MsaG045261	0.855825	9.424594e-62	6.272863e-59
MsaG019318	MsaG045453	0.811986	9.134768e-51	1.637635e-48
MsaG019318	MsaG045550	0.879674	2.165188e-69	3.849476e-66
MsaG019318	MsaG045551	0.870095	3.845311e-66	4.474102e-63
MsaG019318	MsaG045766	0.873293	3.383819e-67	4.515148e-64
MsaG019318	MsaG045806	0.809720	2.810762e-50	4.767683e-48
MsaG019318	MsaG045883	0.815491	1.558533e-51	3.050312e-49
MsaG019318	MsaG046223	0.804223	4.038400e-49	6.013334e-47
MsaG019318	MsaG046276	0.810194	2.224916e-50	3.817441e-48
MsaG019318	MsaG046532	0.811878	9.643579e-51	1.724262e-48
MsaG019318	MsaG046609	0.814305	2.846793e-51	5.407676e-49
MsaG019318	MsaG046732	0.807118	1.003146e-49	1.598416e-47
MsaG019318	MsaG046804	0.865634	1.025771e-64	9.938436e-62
MsaG019318	MsaG046955	0.866811	4.361277e-65	4.432588e-62
MsaG019318	MsaG001996	0.802812	7.896045e-49	1.137954e-46
MsaG019318	MsaG001256	0.885073	2.397562e-71	5.511119e-68
MsaG019318	MsaG003316	0.864053	3.191551e-64	2.903669e-61
MsaG019318	MsaG002372	0.818028	4.230539e-52	8.836447e-50
MsaG019318	MsaG001709	0.830804	4.304114e-55	1.274590e-52
MsaG019318	MsaG004869	0.902675	1.771727e-78	1.061145e-74
MsaG019318	MsaG001683	0.885142	2.260290e-71	5.213673e-68
MsaG019318	MsaG002115	0.855133	1.496595e-61	9.714579e-59
MsaG019318	MsaG002551	0.863835	3.729564e-64	3.363830e-61
MsaG019318	MsaG011523	0.881125	6.594233e-70	1.254102e-66
MsaG019318	MsaG019459	0.894803	3.924588e-75	1.495583e-71
MsaG019318	MsaG019026	0.804009	4.471922e-49	6.625896e-47
MsaG019318	MsaG019513	0.804534	3.481565e-49	5.221502e-47
MsaG019318	MsaG019334	0.804490	3.555106e-49	5.326291e-47
MsaG019318	MsaG022732	0.844679	1.219498e-58	5.529265e-56
MsaG019318	MsaG020251	0.834144	6.454893e-56	2.107400e-53
MsaG019318	MsaG025840	0.863284	5.516498e-64	4.868562e-61
MsaG019318	MsaG027701	0.807315	9.116852e-50	1.459458e-47
MsaG019318	MsaG027119	0.831416	3.048676e-55	9.189689e-53
MsaG019318	MsaG027196	0.866507	5.442190e-65	5.461924e-62
MsaG019318	MsaG034393	0.818517	3.282192e-52	6.942787e-50
MsaG019318	MsaG032019	0.831405	3.067664e-55	9.243940e-53
MsaG019318	MsaG030927	0.810672	1.756201e-50	3.048621e-48
MsaG019318	MsaG033091	0.824969	1.072958e-53	2.696756e-51
MsaG019318	MsaG031725	0.811446	1.195904e-50	2.115692e-48
MsaG019318	MsaG034413	0.801109	1.760994e-48	2.441258e-46
MsaG019318	MsaG031111	0.880853	8.250780e-70	1.549828e-66
MsaG019318	MsaG031373	0.809177	3.671465e-50	6.146460e-48
MsaG019318	MsaG034268	0.802601	8.725505e-49	1.251468e-46
MsaG019318	MsaG032719	0.808685	4.672847e-50	7.731240e-48
MsaG019318	MsaG030868	0.865819	8.971334e-65	8.757742e-62
MsaG019318	MsaG032934	0.801962	1.179644e-48	1.667324e-46
MsaG019318	MsaG040050	0.834087	6.671445e-56	2.174370e-53
MsaG019318	MsaG037255	0.879064	3.554864e-69	6.144480e-66
MsaG019318	MsaG037000	0.817602	5.271905e-52	1.089130e-49
MsaG019318	MsaG037256	0.863728	4.025776e-64	3.615793e-61
MsaG019318	MsaG044878	0.825751	7.021749e-54	1.803326e-51
MsaG019318	MsaG042389	0.803037	7.100059e-49	1.028549e-46
MsaG019318	MsaG042526	0.833315	1.037752e-55	3.306297e-53
MsaG019318	MsaG042289	0.845285	8.381623e-59	3.876530e-56
MsaG019318	MsaG043311	0.809949	2.511320e-50	4.283299e-48
MsaG019318	MsaG044409	0.804574	3.415108e-49	5.126590e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019318	MtrunA17_Chr4g0014321	65.801	231	42	2	1	194	1	231	1.23e-102	295
MsaG019318	MtrunA17_Chr8g0351751	48.954	239	74	3	1	191	1	239	1.05e-70	214
MsaG019318	MtrunA17_Chr4g0013041	54.455	202	42	3	1	167	1	187	4.36e-67	204
MsaG019318	MtrunA17_Chr4g0014031	45.299	234	83	4	1	194	1	229	2.66e-53	170
MsaG019318	MtrunA17_Chr4g0014131	41.803	244	79	5	1	194	1	231	1.18e-44	147
MsaG019318	MtrunA17_Chr3g0110131	37.553	237	91	4	1	186	1	231	5.88e-42	141
MsaG019318	MtrunA17_Chr4g0014121	48.718	156	45	1	1	121	29	184	7.42e-37	126
MsaG019318	MtrunA17_Chr3g0107381	38.750	160	61	2	1	123	1	160	1.48e-35	124
MsaG019318	MtrunA17_Chr2g0296831	65.591	93	32	0	1	93	1	93	1.79e-34	118
MsaG019318	MtrunA17_Chr3g0107331	52.222	90	43	0	4	93	3	92	7.56e-32	113
MsaG019318	MtrunA17_Chr5g0432691	48.387	93	48	0	1	93	1	93	1.39e-28	104
MsaG019318	MtrunA17_Chr2g0283941	48.077	104	50	1	1	104	1	100	2.34e-28	106
MsaG019318	MtrunA17_Chr3g0107351	47.191	89	47	0	5	93	4	92	6.80e-28	102
MsaG019318	MtrunA17_Chr3g0107341	48.315	89	46	0	5	93	4	92	8.62e-28	102
MsaG019318	MtrunA17_Chr3g0107461	43.478	92	52	0	1	92	1	92	6.03e-27	100
MsaG019318	MtrunA17_Chr3g0107361	46.067	89	48	0	5	93	4	92	7.08e-27	100
MsaG019318	MtrunA17_Chr5g0420351	45.161	93	50	1	1	93	1	92	2.43e-26	98.6
MsaG019318	MtrunA17_Chr1g0188681	45.556	90	48	1	1	90	1	89	3.31e-25	95.9
MsaG019318	MtrunA17_Chr1g0197321	44.444	90	49	1	1	90	1	89	2.11e-24	93.6
MsaG019318	MtrunA17_Chr1g0197261	45.556	90	48	1	1	90	1	89	3.12e-24	93.2
MsaG019318	MtrunA17_Chr1g0197461	47.619	84	43	1	4	87	3	85	4.74e-24	92.8
MsaG019318	MtrunA17_Chr7g0267601	42.222	90	52	0	4	93	7	96	3.58e-21	90.1
MsaG019318	MtrunA17_Chr2g0296861	35.870	92	59	0	1	92	1	92	1.14e-20	84.0
MsaG019318	MtrunA17_Chr4g0008701	40.000	90	54	0	4	93	7	96	1.67e-20	88.2
MsaG019318	MtrunA17_Chr4g0031421	33.858	127	49	1	29	120	1	127	2.80e-20	82.8
MsaG019318	MtrunA17_Chr1g0193311	45.161	93	50	1	1	93	1	92	2.13e-19	80.9
MsaG019318	MtrunA17_Chr3g0105791	48.438	64	33	0	29	92	1	64	5.11e-19	79.3
MsaG019318	MtrunA17_Chr7g0218151	41.935	93	53	1	1	93	1	92	7.64e-19	79.3
MsaG019318	MtrunA17_Chr3g0128721	37.778	90	56	0	4	93	7	96	1.71e-17	79.7
MsaG019318	MtrunA17_Chr1g0188651	45.556	90	48	1	1	90	1	89	5.05e-17	74.3
MsaG019318	MtrunA17_Chr1g0188661	41.111	90	52	1	1	90	1	89	6.58e-17	74.3
MsaG019318	MtrunA17_Chr4g0012761	41.935	93	53	1	1	93	1	92	8.12e-17	73.9
MsaG019318	MtrunA17_Chr3g0106421	31.250	128	53	1	29	121	1	128	1.12e-15	72.4
MsaG019318	MtrunA17_Chr3g0106501	30.645	124	78	3	29	146	1	122	3.66e-15	69.7
MsaG019318	MtrunA17_Chr6g0457851	37.895	95	52	4	5	93	15	108	1.51e-13	67.8
MsaG019318	MtrunA17_Chr1g0212151	35.789	95	54	3	5	93	5	98	1.56e-13	67.8
MsaG019318	MtrunA17_Chr6g0449851	36.842	95	53	3	5	93	5	98	5.27e-12	63.2
MsaG019318	MtrunA17_Chr6g0449861	35.789	95	54	3	5	93	13	106	9.79e-12	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019318	AT5G48670.1	41.250	160	60	1	1	126	1	160	1.31e-30	114
MsaG019318	AT3G05860.2	42.593	108	55	1	1	101	1	108	2.55e-28	105
MsaG019318	AT3G05860.3	42.593	108	55	1	1	101	1	108	6.94e-28	105
MsaG019318	AT3G05860.1	42.593	108	55	1	1	101	1	108	1.10e-27	105
MsaG019318	AT1G65300.1	51.111	90	44	0	4	93	3	92	2.86e-26	102
MsaG019318	AT5G26650.1	50.000	90	45	0	4	93	2	91	2.95e-26	103
MsaG019318	AT5G27960.1	50.000	90	45	0	4	93	2	91	3.41e-26	102
MsaG019318	AT1G65330.1	49.438	89	45	0	5	93	4	92	8.00e-25	98.2
MsaG019318	AT2G28700.1	40.000	90	54	0	1	90	1	90	7.25e-20	85.9
MsaG019318	AT5G27810.1	50.769	65	32	0	29	93	1	65	9.23e-20	80.9
MsaG019318	AT1G31640.1	41.573	89	51	1	5	93	4	91	1.44e-19	85.9
MsaG019318	AT1G31630.1	40.449	89	52	1	5	93	4	91	2.20e-19	84.7
MsaG019318	AT1G22590.2	36.667	90	57	0	1	90	1	90	6.53e-19	80.1
MsaG019318	AT5G06500.1	41.758	91	53	0	1	91	1	91	6.77e-19	81.6
MsaG019318	AT5G26630.1	31.658	199	99	3	1	162	1	199	1.58e-18	80.1
MsaG019318	AT2G40210.1	40.000	95	57	0	1	95	1	95	2.58e-18	82.0
MsaG019318	AT5G26580.1	40.860	93	41	1	1	93	1	79	1.36e-17	79.7
MsaG019318	AT5G58890.1	39.560	91	45	3	1	81	1	91	1.09e-13	68.2
MsaG019318	AT5G55690.1	33.071	127	70	5	1	116	1	123	1.32e-13	67.8
MsaG019318	AT5G55690.2	33.071	127	70	5	1	116	1	123	1.32e-13	67.8

Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAAGCTTGTGCAGTAGTTTA+TGG	0.155587	4:+26870858	MsaT019318.1:CDS
CACAACAATGACTGGGAAAA+AGG	0.190222	4:+26870728	None:intergenic
TCTTCATTACTGAATGTAAA+TGG	0.245246	4:-26871231	None:intergenic
TCATTGTCGATGATGATTCT+AGG	0.260008	4:+26870763	MsaT019318.1:CDS
AGATCTCTGGTTGAGGCTCA+TGG	0.361064	4:-26870884	None:intergenic
TACCAACCTCCTTCAATTTG+TGG	0.372241	4:-26871155	None:intergenic
AATGTTGTCGCCATTATTCA+TGG	0.384588	4:-26871289	None:intergenic
TACATTCAGTAATGAAGAAA+TGG	0.387226	4:+26871236	MsaT019318.1:CDS
TGTGGTGATGGCCAGATCTC+TGG	0.397343	4:-26870897	None:intergenic
TATGCAGAATAATATGTCAT+TGG	0.399656	4:+26871101	MsaT019318.1:intron
GGAAAGCAACATACAATAGA+AGG	0.409123	4:+26870784	MsaT019318.1:CDS
ATGTAAATGGTGGTGGCATT+TGG	0.422156	4:-26871218	None:intergenic
GATCTCTGGTTGAGGCTCAT+GGG	0.428787	4:-26870883	None:intergenic
AGGATGGGTTCTGGCAATGC+TGG	0.431426	4:+26871261	MsaT019318.1:CDS
TCAAAATTCAGAACAATGAC+TGG	0.434871	4:+26870939	MsaT019318.1:CDS
TAATGAAGAAATGGAAAGGA+TGG	0.435935	4:+26871245	MsaT019318.1:CDS
AATTGAAGGAGGTTGGTAGA+AGG	0.442772	4:+26871160	MsaT019318.1:CDS
GGAGATGAGTCGGTGCCCTT+TGG	0.451552	4:+26871351	MsaT019318.1:CDS
GTTGATTGACCACAAATTGA+AGG	0.458305	4:+26871146	MsaT019318.1:CDS
GAAATGGAAAGGATGGGTTC+TGG	0.460660	4:+26871252	MsaT019318.1:CDS
AAGAGACTTACATGAAAGAA+AGG	0.463147	4:+26870991	MsaT019318.1:CDS
GCTGGAATGCCCATGAATAA+TGG	0.463663	4:+26871279	MsaT019318.1:CDS
ATGAGCCTCAACCAGAGATC+TGG	0.467494	4:+26870886	MsaT019318.1:CDS
TTGATTCAAAACATCTTTGT+TGG	0.470119	4:+26871124	MsaT019318.1:CDS
ATCTCTGGTTGAGGCTCATG+GGG	0.492174	4:-26870882	None:intergenic
AGAGATCTGGCCATCACCAC+AGG	0.494291	4:+26870899	MsaT019318.1:CDS
GACCACAAATTGAAGGAGGT+TGG	0.522187	4:+26871153	MsaT019318.1:CDS
ATCACCACAGGGAGTTCAAA+CGG	0.524260	4:+26870911	MsaT019318.1:CDS
CTAGGATCGACCTCGCCAAA+GGG	0.529567	4:-26871366	None:intergenic
ATGTTGTCGCCATTATTCAT+GGG	0.540445	4:-26871288	None:intergenic
GCGGAAGGGTCTACTGAAGA+AGG	0.542122	4:+26870806	MsaT019318.1:CDS
AGAATCATCATCGACAATGA+AGG	0.542377	4:-26870760	None:intergenic
AGTAGATTCTGCAAAACTCT+AGG	0.544749	4:-26871384	None:intergenic
GATGGCCAGATCTCTGGTTG+AGG	0.555241	4:-26870891	None:intergenic
AACATACAATAGAAGGCGGA+AGG	0.566279	4:+26870791	MsaT019318.1:CDS
GTTTGAACTCCCTGTGGTGA+TGG	0.567517	4:-26870909	None:intergenic
TCTAGGATCGACCTCGCCAA+AGG	0.568977	4:-26871367	None:intergenic
AGAGACTTACATGAAAGAAA+GGG	0.577279	4:+26870992	MsaT019318.1:CDS
TATGAACTAAGCACTTTGTG+TGG	0.579542	4:+26870831	MsaT019318.1:CDS
TGGTAGAAGGTTGCAAGCAG+AGG	0.582220	4:+26871173	MsaT019318.1:CDS
CAAAATTCAGAACAATGACT+GGG	0.592691	4:+26870940	MsaT019318.1:CDS
TCAGTAATGAAGAAATGGAA+AGG	0.596923	4:+26871241	MsaT019318.1:CDS
AATGAAGAAATGGAAAGGAT+GGG	0.602949	4:+26871246	MsaT019318.1:CDS
GGCTTGATGATGAATAGTAA+TGG	0.609105	4:+26871330	MsaT019318.1:CDS
TTGCAAGCAGAGGATAATAG+TGG	0.618049	4:+26871183	MsaT019318.1:CDS
TGAGTCGGTGCCCTTTGGCG+AGG	0.619442	4:+26871356	MsaT019318.1:CDS
TTACTGAATGTAAATGGTGG+TGG	0.621024	4:-26871225	None:intergenic
GATTGACCACAAATTGAAGG+AGG	0.630849	4:+26871149	MsaT019318.1:CDS
GCGGAAGAAGAGCAACAAAA+CGG	0.630975	4:+26870962	MsaT019318.1:CDS
GAATAGTAATGGAGATGAGT+CGG	0.650993	4:+26871341	MsaT019318.1:CDS
ACATACAATAGAAGGCGGAA+GGG	0.677825	4:+26870792	MsaT019318.1:CDS
GAGATCTGGCCATCACCACA+GGG	0.678612	4:+26870900	MsaT019318.1:CDS
AAGCAACATACAATAGAAGG+CGG	0.694844	4:+26870787	MsaT019318.1:CDS
TCATTACTGAATGTAAATGG+TGG	0.709945	4:-26871228	None:intergenic
AATTCAGAACAATGACTGGG+CGG	0.724414	4:+26870943	MsaT019318.1:CDS
AGCACCGTTTGAACTCCCTG+TGG	0.787870	4:-26870915	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	26870735	26871413	26870735	ID=MsaG019318
Chr4	mRNA	26870735	26871413	26870735	ID=MsaT019318.1;Parent=MsaG019318
Chr4	exon	26870735	26871013	26870735	ID=MsaT019318.1.exon1;Parent=MsaT019318.1
Chr4	CDS	26870735	26871013	26870735	ID=cds.MsaT019318.1;Parent=MsaT019318.1
Chr4	exon	26871108	26871413	26871108	ID=MsaT019318.1.exon2;Parent=MsaT019318.1
Chr4	CDS	26871108	26871413	26871108	ID=cds.MsaT019318.1;Parent=MsaT019318.1

Gene Sequence

>MsaT019318.1

ATGACTGGGAAAAAGGTGAAACTTGCCTTCATTGTCGATGATGATTCTAGGAAAGCAACATACAATAGAAGGCGGAAGGGTCTACTGAAGAAGGTTTATGAACTAAGCACTTTGTGTGGAGTTGAAGCTTGTGCAGTAGTTTATGGACCCCATGAGCCTCAACCAGAGATCTGGCCATCACCACAGGGAGTTCAAACGGTGCTCTCAAAATTCAGAACAATGACTGGGCGGAAGAAGAGCAACAAAACGGTTGATCAAGAGACTTACATGAAAGAAAGGAATAATATGTCATTGGTTGATTCAAAACATCTTTGTTGGTTGATTGACCACAAATTGAAGGAGGTTGGTAGAAGGTTGCAAGCAGAGGATAATAGTGGTCAAATTCAAATCCAAATGCCACCACCATTTACATTCAGTAATGAAGAAATGGAAAGGATGGGTTCTGGCAATGCTGGAATGCCCATGAATAATGGCGACAACATTGAAAGTCAATCTTTTATGGGCTTGATGATGAATAGTAATGGAGATGAGTCGGTGCCCTTTGGCGAGGTCGATCCTAGAGTTTTGCAGAATCTACTACCTTAA

Protein sequence

>MsaT019318.1

MTGKKVKLAFIVDDDSRKATYNRRRKGLLKKVYELSTLCGVEACAVVYGPHEPQPEIWPSPQGVQTVLSKFRTMTGRKKSNKTVDQETYMKERNNMSLVDSKHLCWLIDHKLKEVGRRLQAEDNSGQIQIQMPPPFTFSNEEMERMGSGNAGMPMNNGDNIESQSFMGLMMNSNGDESVPFGEVDPRVLQNLLP*