AlfalfaGEDB | MsaG019319

M. sativa ssp. caerulea / MsaG019319

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019319	XP_003605474.1	82.231	242	28	1	4	245	3	229	2.79e-131	380

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019319	sp\|Q9FJK3\|AGL80_ARATH	53.165	158	73	1	4	161	3	159	3.87e-43	151

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019319	tr\|G7JM29\|G7JM29_MEDTR	82.231	242	28	1	4	245	3	229	1.33e-131	380

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG019319	TF	MADS-M-type

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000045	MsaG019319	0.907368	1.302747e-80	1.040088e-76
MsaG000062	MsaG019319	0.815221	1.788012e-51	3.475791e-49
MsaG000070	MsaG019319	0.854162	2.850840e-61	1.787521e-58
MsaG000083	MsaG019319	0.876479	2.813888e-68	4.322294e-65
MsaG000110	MsaG019319	0.811901	9.533545e-51	1.705552e-48
MsaG000113	MsaG019319	0.853797	3.628212e-61	2.245549e-58
MsaG000117	MsaG019319	0.870668	2.498827e-66	2.978114e-63
MsaG000127	MsaG019319	0.873499	2.887761e-67	3.887795e-64
MsaG000128	MsaG019319	0.896718	6.382280e-76	2.703596e-72
MsaG000140	MsaG019319	0.843825	2.062766e-58	9.094331e-56

Showing 1 to 10 of 2,637 entries

Previous1 2 3 4 5…264Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019319	MtrunA17_Chr4g0014031	82.231	242	28	1	4	245	3	229	2.57e-135	380
MsaG019319	MtrunA17_Chr4g0014131	79.752	242	36	1	4	245	3	231	1.47e-130	368
MsaG019319	MtrunA17_Chr8g0351751	61.753	251	81	5	4	245	3	247	1.44e-98	287
MsaG019319	MtrunA17_Chr4g0014321	58.367	245	88	4	1	245	1	231	2.35e-94	276
MsaG019319	MtrunA17_Chr4g0013041	58.216	213	59	3	6	218	5	187	9.35e-81	241
MsaG019319	MtrunA17_Chr4g0014121	81.169	154	29	0	4	157	31	184	3.01e-80	239
MsaG019319	MtrunA17_Chr3g0110131	48.133	241	118	4	4	242	3	238	5.74e-62	194
MsaG019319	MtrunA17_Chr3g0107381	54.248	153	69	1	4	156	3	154	6.09e-57	181
MsaG019319	MtrunA17_Chr2g0296831	72.500	120	33	0	4	123	3	122	6.06e-49	157
MsaG019319	MtrunA17_Chr3g0107331	44.099	161	89	1	4	164	2	161	1.15e-42	142

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019319	AT5G48670.1	53.165	158	73	1	4	161	3	159	3.94e-44	151
MsaG019319	AT1G65300.1	40.217	184	96	3	4	187	2	171	9.40e-40	139
MsaG019319	AT5G26630.1	41.872	203	101	3	4	204	3	190	7.57e-39	134
MsaG019319	AT1G65330.1	40.541	185	96	2	4	188	2	172	1.19e-38	136
MsaG019319	AT5G26650.1	40.244	164	97	1	6	169	3	165	2.78e-35	129
MsaG019319	AT5G27960.1	39.634	164	98	1	6	169	3	165	1.74e-34	126
MsaG019319	AT1G31630.1	34.615	182	104	3	4	185	2	168	4.12e-33	123
MsaG019319	AT1G31640.1	38.411	151	91	2	4	154	2	150	4.40e-30	117
MsaG019319	AT5G27810.1	53.763	93	43	0	30	122	1	93	5.23e-29	106
MsaG019319	AT3G05860.2	38.514	148	90	1	4	151	3	149	2.87e-28	107

Showing 1 to 10 of 20 entries

Previous1 2Next

Find 62 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAGTCCAACTCGAAA+TGG	0.452175	4:+26873259	MsaT019319.1:CDS
AAAGGCCAAATCTCAGGTTG+AGG	0.605277	4:-26872909	None:intergenic
AAAGGCTTCAATGCCACAGA+GGG	0.618725	4:-26872862	None:intergenic
AACCATGGGTAGAAGAAGTA+AGG	0.501192	4:+26872746	None:intergenic
AACCTTACTTCTTCTACCCA+TGG	0.464315	4:-26872748	None:intergenic
AACGAAGGGTCTATTGAAAA+AGG	0.335070	4:+26872824	MsaT019319.1:CDS
AAGAGACTTTCTTGACACAA+AGG	0.620991	4:+26873009	MsaT019319.1:CDS
AGAAACAAAGAAAAGAAAAT+AGG	0.231520	4:+26873057	MsaT019319.1:CDS
AGAGACAGTGCCATTTGGTG+AGG	0.639188	4:+26873430	MsaT019319.1:CDS
AGAGACTTTCTTGACACAAA+GGG	0.533444	4:+26873010	MsaT019319.1:CDS

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	26872750	26873487	26872750	ID=MsaG019319
Chr4	mRNA	26872750	26873487	26872750	ID=MsaT019319.1;Parent=MsaG019319
Chr4	exon	26872750	26873487	26872750	ID=MsaT019319.1.exon1;Parent=MsaT019319.1
Chr4	CDS	26872750	26873487	26872750	ID=cds.MsaT019319.1;Parent=MsaT019319.1

Gene Sequence

>MsaT019319.1

ATGGGTAGAAGAAGTAAGGTTAAACTTGCCTTCATTGTCAATGATGTTGCAAGGAAAGCATCATACAAGAAAAGAACGAAGGGTCTATTGAAAAAGGTTGCTGAACTTAGCACCCTCTGTGGCATTGAAGCCTTTGCCATAGTGTATGGACCTTATGAGCCTCAACCTGAGATTTGGCCTTTACCAGAGGGTGTCCAATCTGTGCTCTCAAAATTCATGACGATGCACGAGTTTCAAAAGTGCAAGAAAATGATGAACCAAGAGACTTTCTTGACACAAAGGGTCCTGAAGGCTGAAGAGAAATTGAAGAAACAAAGAAAAGAAAATAGGGAGCAAGAGATGACAATACTCATGAGTCAATGTCTTAATGAAGGTAAAGTTGTGCATGACAATATGTCAACAATGGATATGAGTTATCTTGCTTGGTTGATTGACCACAATTTGAAGGATGTTAGTAGACGTTTGGAAGCATGGGATAACAATGATCAAAATCAAATCATGGCTATTCAAAACCAAGTCCAACTCGAAATGGCGACAACAATACCACCACCACTTCTAGCAGCATCTAGGAGTGAAGAAATGGCAATTATGGGTCATGGCCATGTTGGGATACCTATTAATGATGATGACATTATGCAAAGTCAATTATTGATGGACTCAATGGTGGCTGGTAATGTGCAAGAGACAGTGCCATTTGGTGAGGTCAGTTCTGGACTTTGGTCTGATTTACTACCTTGA

Protein sequence

>MsaT019319.1

MGRRSKVKLAFIVNDVARKASYKKRTKGLLKKVAELSTLCGIEAFAIVYGPYEPQPEIWPLPEGVQSVLSKFMTMHEFQKCKKMMNQETFLTQRVLKAEEKLKKQRKENREQEMTILMSQCLNEGKVVHDNMSTMDMSYLAWLIDHNLKDVSRRLEAWDNNDQNQIMAIQNQVQLEMATTIPPPLLAASRSEEMAIMGHGHVGIPINDDDIMQSQLLMDSMVAGNVQETVPFGEVSSGLWSDLLP*