AlfalfaGEDB | MsaG019452

M. sativa ssp. caerulea / MsaG019452

KEGG: -
GO: -
PFAM: PF00583.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019452	XP_039689122.1	96.651	209	7	0	2	210	72	280	3.90e-148	423

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019452	tr\|A0A396I1U4\|A0A396I1U4_MEDTR	96.651	209	7	0	2	210	72	280	1.86e-148	423

TFs/TRs:

Gene ID	Type	Classification
MsaG019452	TR	GNAT

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000107	MsaG019452	0.806241	1.533522e-49	2.393550e-47
MsaG000464	MsaG019452	0.805391	2.309277e-49	3.532894e-47
MsaG003564	MsaG019452	0.801081	1.784448e-48	2.472179e-46
MsaG003768	MsaG019452	0.837339	1.010331e-56	3.631031e-54
MsaG004798	MsaG019452	0.801193	1.692756e-48	2.351159e-46
MsaG005107	MsaG019452	0.839113	3.544639e-57	1.345849e-54
MsaG005210	MsaG019452	0.811454	1.191350e-50	2.108054e-48
MsaG005259	MsaG019452	0.809156	3.710828e-50	6.209126e-48
MsaG005329	MsaG019452	0.812478	7.142992e-51	1.296266e-48
MsaG005510	MsaG019452	0.803389	6.006680e-49	8.772822e-47
MsaG006623	MsaG019452	0.808540	5.018084e-50	8.273047e-48
MsaG006683	MsaG019452	0.807167	9.798308e-50	1.563047e-47
MsaG006988	MsaG019452	0.837280	1.045766e-56	3.751640e-54
MsaG007000	MsaG019452	0.828490	1.563288e-54	4.334347e-52
MsaG007215	MsaG019452	0.801230	1.663605e-48	2.312549e-46
MsaG007501	MsaG019452	0.816848	7.774775e-52	1.575301e-49
MsaG007568	MsaG019452	0.823415	2.477677e-53	5.969403e-51
MsaG007828	MsaG019452	0.800902	1.940222e-48	2.677194e-46
MsaG007834	MsaG019452	0.804095	4.294114e-49	6.375156e-47
MsaG008218	MsaG019452	0.814676	2.359365e-51	4.523580e-49
MsaG008356	MsaG019452	0.812231	8.082017e-51	1.457621e-48
MsaG009015	MsaG019452	0.830107	6.358366e-55	1.845834e-52
MsaG009657	MsaG019452	0.813047	5.370602e-51	9.885238e-49
MsaG009767	MsaG019452	0.811391	1.229047e-50	2.171427e-48
MsaG010050	MsaG019452	0.800300	2.570119e-48	3.498470e-46
MsaG010104	MsaG019452	0.820169	1.384754e-52	3.059391e-50
MsaG010768	MsaG019452	0.842440	4.804972e-58	2.026613e-55
MsaG011010	MsaG019452	0.816513	9.236958e-52	1.855505e-49
MsaG011109	MsaG019452	0.824905	1.110673e-53	2.786750e-51
MsaG012037	MsaG019452	0.840231	1.820397e-57	7.157989e-55
MsaG012263	MsaG019452	0.804173	4.135562e-49	6.150778e-47
MsaG012568	MsaG019452	0.804540	3.471427e-49	5.207083e-47
MsaG014774	MsaG019452	0.846381	4.237018e-59	2.032232e-56
MsaG015184	MsaG019452	0.864600	2.158470e-64	2.006933e-61
MsaG017150	MsaG019452	0.823135	2.877871e-53	6.881195e-51
MsaG017620	MsaG019452	0.813535	4.201095e-51	7.827581e-49
MsaG017946	MsaG019452	0.804840	3.007042e-49	4.542088e-47
MsaG018290	MsaG019452	0.830239	5.907148e-55	1.721269e-52
MsaG018489	MsaG019452	0.832307	1.841862e-55	5.697886e-53
MsaG018786	MsaG019452	0.827211	3.164000e-54	8.462754e-52
MsaG018793	MsaG019452	0.838678	4.589426e-57	1.719035e-54
MsaG018874	MsaG019452	0.829489	8.978329e-55	2.560694e-52
MsaG019108	MsaG019452	0.826661	4.276218e-54	1.126347e-51
MsaG019452	MsaG019564	0.860570	3.708113e-63	2.946689e-60
MsaG019452	MsaG019573	0.802420	9.506187e-49	1.357788e-46
MsaG019452	MsaG019628	0.860349	4.322647e-63	3.406527e-60
MsaG019452	MsaG019654	0.852201	1.032979e-60	6.042847e-58
MsaG019452	MsaG019660	0.824745	1.211623e-53	3.026572e-51
MsaG019452	MsaG019935	0.840654	1.412883e-57	5.629933e-55
MsaG019452	MsaG019985	0.842518	4.582679e-58	1.937712e-55
MsaG019452	MsaG020288	0.810185	2.234767e-50	3.833522e-48
MsaG019452	MsaG020334	0.833439	9.668218e-56	3.091721e-53
MsaG019452	MsaG020420	0.845006	9.959488e-59	4.565144e-56
MsaG019452	MsaG020467	0.861551	1.871199e-63	1.543323e-60
MsaG019452	MsaG021488	0.824497	1.385045e-53	3.436548e-51
MsaG019452	MsaG021775	0.803090	6.921806e-49	1.003982e-46
MsaG019452	MsaG022345	0.817959	4.384407e-52	9.141496e-50
MsaG019452	MsaG022486	0.808404	5.361645e-50	8.810351e-48
MsaG019452	MsaG022515	0.831859	2.374484e-55	7.251074e-53
MsaG019452	MsaG022547	0.808402	5.368346e-50	8.820790e-48
MsaG019452	MsaG023005	0.811294	1.289861e-50	2.273441e-48
MsaG019452	MsaG023275	0.825420	8.403974e-54	2.138533e-51
MsaG019452	MsaG023623	0.837747	7.952030e-57	2.893782e-54
MsaG019452	MsaG024055	0.800093	2.830438e-48	3.834917e-46
MsaG019452	MsaG024114	0.847649	1.911047e-59	9.563943e-57
MsaG019452	MsaG024272	0.838141	6.301983e-57	2.321392e-54
MsaG019452	MsaG026022	0.825468	8.191177e-54	2.087141e-51
MsaG019452	MsaG026478	0.830503	5.093884e-55	1.495473e-52
MsaG019452	MsaG026841	0.830360	5.519107e-55	1.613786e-52
MsaG019452	MsaG026849	0.837987	6.903352e-57	2.530794e-54
MsaG019452	MsaG026830	0.813167	5.054512e-51	9.331469e-49
MsaG019452	MsaG026831	0.823940	1.868759e-53	4.566952e-51
MsaG019452	MsaG027026	0.836394	1.755622e-56	6.132307e-54
MsaG019452	MsaG026987	0.802334	9.898062e-49	1.411002e-46
MsaG019452	MsaG027055	0.815116	1.885938e-51	3.656278e-49
MsaG019452	MsaG027303	0.821007	8.912990e-53	2.013275e-50
MsaG019452	MsaG027344	0.831170	3.503104e-55	1.048365e-52
MsaG019452	MsaG027775	0.826441	4.821766e-54	1.262387e-51
MsaG019452	MsaG027992	0.808696	4.649521e-50	7.694501e-48
MsaG019452	MsaG028109	0.833984	7.074462e-56	2.298753e-53
MsaG019452	MsaG028163	0.830411	5.363360e-55	1.570565e-52
MsaG019452	MsaG029413	0.833236	1.085759e-55	3.451509e-53
MsaG019452	MsaG029473	0.812063	8.791669e-51	1.579034e-48
MsaG019452	MsaG030045	0.831311	3.235592e-55	9.722615e-53
MsaG019452	MsaG030070	0.828624	1.451414e-54	4.039264e-52
MsaG019452	MsaG030359	0.801863	1.236041e-48	1.743134e-46
MsaG019452	MsaG030546	0.834971	4.010349e-56	1.342108e-53
MsaG019452	MsaG031622	0.819361	2.114154e-52	4.572231e-50
MsaG019452	MsaG032046	0.800973	1.876317e-48	2.593194e-46
MsaG019452	MsaG032064	0.819034	2.507443e-52	5.376399e-50
MsaG019452	MsaG032272	0.872577	5.866281e-67	7.587670e-64
MsaG019452	MsaG032221	0.800802	2.032830e-48	2.798786e-46
MsaG019452	MsaG032422	0.808562	4.965046e-50	8.189832e-48
MsaG019452	MsaG033593	0.812654	6.539559e-51	1.191921e-48
MsaG019452	MsaG034946	0.804798	3.068379e-49	4.630033e-47
MsaG019452	MsaG034996	0.819274	2.212251e-52	4.773409e-50
MsaG019452	MsaG035529	0.802161	1.073694e-48	1.524475e-46
MsaG019452	MsaG036153	0.813958	3.393816e-51	6.390942e-49
MsaG019452	MsaG040425	0.835359	3.203784e-56	1.084731e-53
MsaG019452	MsaG041112	0.819788	1.691341e-52	3.698870e-50
MsaG019452	MsaG041336	0.802466	9.301972e-49	1.329981e-46
MsaG019452	MsaG042054	0.818737	2.927873e-52	6.228717e-50
MsaG019452	MsaG042103	0.826838	3.880294e-54	1.027121e-51
MsaG019452	MsaG042579	0.822708	3.614297e-53	8.543049e-51
MsaG019452	MsaG042679	0.801736	1.311813e-48	1.844659e-46
MsaG019452	MsaG042717	0.871606	1.229660e-66	1.525649e-63
MsaG019452	MsaG044278	0.821733	6.069841e-53	1.397667e-50
MsaG019452	MsaG044584	0.829865	7.281870e-55	2.099317e-52
MsaG019452	MsaG044934	0.817236	6.369969e-52	1.303678e-49
MsaG019452	MsaG045238	0.830957	3.948819e-55	1.174534e-52
MsaG019452	MsaG045371	0.817056	6.987655e-52	1.423485e-49
MsaG019452	MsaG045568	0.844633	1.254130e-58	5.678169e-56
MsaG019452	MsaG045767	0.838710	4.503446e-57	1.688506e-54
MsaG019452	MsaG045769	0.872338	7.041960e-67	9.016290e-64
MsaG019452	MsaG046472	0.804382	3.743861e-49	5.595199e-47
MsaG019452	MsaG046473	0.829014	1.169392e-54	3.290103e-52
MsaG019452	MsaG046498	0.823926	1.883552e-53	4.601229e-51
MsaG019452	MsaG046507	0.840738	1.343143e-57	5.366136e-55
MsaG019452	MsaG047047	0.800542	2.296184e-48	3.142789e-46
MsaG019452	MsaG001564	0.863160	6.023132e-64	5.289919e-61
MsaG019452	MsaG002242	0.815207	1.800851e-51	3.499518e-49
MsaG019452	MsaG001950	0.827054	3.447448e-54	9.180530e-52
MsaG019452	MsaG003742	0.827293	3.023965e-54	8.107076e-52
MsaG019452	MsaG004474	0.810688	1.742648e-50	3.026223e-48
MsaG019452	MsaG013712	0.801688	1.342108e-48	1.885166e-46
MsaG019452	MsaG013706	0.807431	8.617336e-50	1.383330e-47
MsaG019452	MsaG013252	0.829779	7.638179e-55	2.196596e-52
MsaG019452	MsaG018678	0.801465	1.490074e-48	2.082445e-46
MsaG019452	MsaG017935	0.827026	3.500972e-54	9.315611e-52
MsaG019452	MsaG019592	0.806350	1.454763e-49	2.276447e-47
MsaG019452	MsaG028121	0.815827	1.312873e-51	2.591567e-49
MsaG019452	MsaG027608	0.855100	1.530074e-61	9.920031e-59
MsaG019452	MsaG028944	0.801884	1.223471e-48	1.726272e-46
MsaG019452	MsaG033233	0.834016	6.946018e-56	2.259122e-53
MsaG019452	MsaG033253	0.814474	2.613691e-51	4.985884e-49
MsaG019452	MsaG030007	0.803353	6.109550e-49	8.915696e-47
MsaG019452	MsaG034262	0.818413	3.463414e-52	7.306395e-50
MsaG019452	MsaG033504	0.819000	2.552965e-52	5.468880e-50
MsaG019452	MsaG036873	0.802228	1.040583e-48	1.479727e-46
MsaG019452	MsaG036787	0.806813	1.163205e-49	1.840107e-47
MsaG019452	MsaG035914	0.804117	4.247909e-49	6.309694e-47
MsaG019452	MsaG035795	0.836694	1.473988e-56	5.194871e-54
MsaG019452	MsaG042698	0.822931	3.210014e-53	7.633120e-51
MsaG019452	MsaG042291	0.832542	1.611755e-55	5.020184e-53

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019452	MtrunA17_Chr4g0014921	96.651	209	7	0	2	210	72	280	3.59e-152	423

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019452	AT1G72030.1	54.040	198	85	3	14	206	60	256	1.98e-62	195

Find 36 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTAATATTCTACTTAATT+AGG	0.161235	4:-28932549	None:intergenic
CAAGAGTACCTTTACATTTC+AGG	0.191164	4:+28931843	MsaT019452.1:CDS
TAGCTGTCTCCAATGCTTTC+AGG	0.230533	4:+28931868	MsaT019452.1:CDS
ATCCACCATGGACAAGTAAT+TGG	0.234201	4:+28932478	MsaT019452.1:CDS
TTTGTTCTTTCAATTCTTTA+AGG	0.237732	4:+28930960	MsaT019452.1:CDS
AAGAGCTTATGAAGAAGATT+TGG	0.266902	4:+28932407	MsaT019452.1:CDS
AATCTTCTTCATAAGCTCTT+AGG	0.289976	4:-28932404	None:intergenic
AAGAAAATGTCGTGTTCTTA+TGG	0.298968	4:+28932506	MsaT019452.1:CDS
AAATAGGCTGAAGTGCTTTC+AGG	0.310898	4:+28931488	MsaT019452.1:intron
AAACTCATTACCCCACAAAT+TGG	0.313360	4:-28932376	None:intergenic
ATTATATAGGTATGCTTGTT+TGG	0.327298	4:+28931719	MsaT019452.1:intron
TGAAAATATGAAGCAAAAGT+TGG	0.383459	4:+28930816	MsaT019452.1:CDS
TAACAACAAATGTACCTATC+AGG	0.398497	4:-28931539	None:intergenic
AGAGCTTATGAAGAAGATTT+GGG	0.419407	4:+28932408	MsaT019452.1:CDS
GTGAATATGGATGGAGGATA+AGG	0.442867	4:+28930851	MsaT019452.1:CDS
AGGTACTCTTGTGCATCAGC+AGG	0.454568	4:-28931831	None:intergenic
GATTCATCAAAGGAACTTGT+AGG	0.457006	4:+28931759	MsaT019452.1:CDS
TTAAATACTCACCTCCTGAT+AGG	0.463612	4:+28931525	MsaT019452.1:CDS
GTGACATAATATCCAATTTG+TGG	0.473968	4:+28932364	MsaT019452.1:CDS
TCCACCATGGACAAGTAATT+GGG	0.475166	4:+28932479	MsaT019452.1:CDS
TGACATAATATCCAATTTGT+GGG	0.486196	4:+28932365	MsaT019452.1:CDS
AAATCATTGAAAAGAGCTAC+AGG	0.509660	4:-28930940	None:intergenic
CGAACATTGTACACAAATGC+TGG	0.511040	4:+28932435	MsaT019452.1:CDS
CAGCTATTCCTGAAATGTAA+AGG	0.520945	4:-28931851	None:intergenic
GGAGATGTTCAAGCACATCT+TGG	0.525750	4:-28931809	None:intergenic
ATATAGGTATGCTTGTTTGG+TGG	0.525798	4:+28931722	MsaT019452.1:intron
CCAACCCAATTACTTGTCCA+TGG	0.539516	4:-28932483	None:intergenic
CCATGGACAAGTAATTGGGT+TGG	0.581303	4:+28932483	MsaT019452.1:CDS
GTGGATCTTTAGACACAAGT+TGG	0.596499	4:-28932461	None:intergenic
TGGTGTGTGAATATGGATGG+AGG	0.600815	4:+28930845	MsaT019452.1:CDS
GGTACTCTTGTGCATCAGCA+GGG	0.603876	4:-28931830	None:intergenic
GAATGATCAAGATTCATCAA+AGG	0.633438	4:+28931749	MsaT019452.1:CDS
ACCCAATTACTTGTCCATGG+TGG	0.661718	4:-28932480	None:intergenic
CAACAAATGTACCTATCAGG+AGG	0.675327	4:-28931536	None:intergenic
GACATAATATCCAATTTGTG+GGG	0.680586	4:+28932366	MsaT019452.1:CDS
TTGTGTCTAAAGATCCACCA+TGG	0.708310	4:+28932466	MsaT019452.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	28930793	28932557	28930793	ID=MsaG019452
Chr4	mRNA	28930793	28932557	28930793	ID=MsaT019452.1;Parent=MsaG019452
Chr4	exon	28930793	28930981	28930793	ID=MsaT019452.1.exon1;Parent=MsaT019452.1
Chr4	CDS	28930793	28930981	28930793	ID=cds.MsaT019452.1;Parent=MsaT019452.1
Chr4	exon	28931494	28931546	28931494	ID=MsaT019452.1.exon2;Parent=MsaT019452.1
Chr4	CDS	28931494	28931546	28931494	ID=cds.MsaT019452.1;Parent=MsaT019452.1
Chr4	exon	28931728	28931889	28931728	ID=MsaT019452.1.exon3;Parent=MsaT019452.1
Chr4	CDS	28931728	28931889	28931728	ID=cds.MsaT019452.1;Parent=MsaT019452.1
Chr4	exon	28932329	28932557	28932329	ID=MsaT019452.1.exon4;Parent=MsaT019452.1
Chr4	CDS	28932329	28932557	28932329	ID=cds.MsaT019452.1;Parent=MsaT019452.1

Gene Sequence

>MsaT019452.1

ATGTTGGAAGTTGAGAATGATAGTGAAAATATGAAGCAAAAGTTGGATTTTTTGGTGTGTGAATATGGATGGAGGATAAGGAGATTAATTGAGAATGCAGATGAGATAAAAATGGCTGCTCAAGTTCAAGCTGAAGCTTTTCATGATCCTGTAGCTCTTTTCAATGATTTGTTCTTTCAATTCTTTAAGGCTGAAGTGCTTTCAGGACTGCTTTACAAGCTTAAATACTCACCTCCTGATAGGTATGCTTGTTTGGTGGCTGAGAATGATCAAGATTCATCAAAGGAACTTGTAGGTGTTATTGATGTTACTGTAATGAGAGACCAAGATGTGCTTGAACATCTCCCTGCTGATGCACAAGAGTACCTTTACATTTCAGGAATAGCTGTCTCCAATGCTTTCAGGAGGAGGAAAATTGCAACTGTTATGTTAAAAGCATGTGACATAATATCCAATTTGTGGGGTAATGAGTTTCTTGTCCTAAGAGCTTATGAAGAAGATTTGGGTGCTCGAACATTGTACACAAATGCTGGCTACCAACTTGTGTCTAAAGATCCACCATGGACAAGTAATTGGGTTGGAAGAAAATGTCGTGTTCTTATGGTCAAAAGAATTAGTTTATTGCCTAATTAA

Protein sequence

>MsaT019452.1

MLEVENDSENMKQKLDFLVCEYGWRIRRLIENADEIKMAAQVQAEAFHDPVALFNDLFFQFFKAEVLSGLLYKLKYSPPDRYACLVAENDQDSSKELVGVIDVTVMRDQDVLEHLPADAQEYLYISGIAVSNAFRRRKIATVMLKACDIISNLWGNEFLVLRAYEEDLGARTLYTNAGYQLVSKDPPWTSNWVGRKCRVLMVKRISLLPN*