AlfalfaGEDB | MsaG019459

M. sativa ssp. caerulea / MsaG019459

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019459	XP_013467909.2	91.818	110	9	0	1	110	1	110	1.49e-70	216

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019459	sp\|Q3E7I5\|FRS12_ARATH	35.484	93	47	1	18	110	27	106	6.24e-12	63.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019459	tr\|A0A072VK17\|A0A072VK17_MEDTR	91.818	110	9	0	1	110	1	110	3.41e-70	215

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TFs/TRs:

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Gene ID	Type	Classification
MsaG019459	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG019459	0.865719	9.642106e-65	9.374850e-62
MsaG000081	MsaG019459	0.879127	3.375577e-69	5.852751e-66
MsaG000234	MsaG019459	0.909276	1.641062e-81	1.480164e-77
MsaG000364	MsaG019459	0.878828	4.299457e-69	7.351852e-66
MsaG000379	MsaG019459	0.825352	8.720093e-54	2.214917e-51
MsaG000520	MsaG019459	0.917150	1.896183e-85	2.909286e-81
MsaG000842	MsaG019459	0.827536	2.646383e-54	7.143254e-52
MsaG001246	MsaG019459	0.865224	1.379021e-64	1.314662e-61
MsaG001256	MsaG019459	0.937132	1.633935e-97	1.200325e-92
MsaG001281	MsaG019459	0.902343	2.484559e-78	1.459295e-74

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019459	MtrunA17_Chr3g0082121	62.500	112	40	1	1	110	8	119	7.39e-40	140
MsaG019459	MtrunA17_Chr5g0401121	56.364	110	44	1	1	110	27	132	4.06e-35	118
MsaG019459	MtrunA17_Chr6g0458391	47.619	84	44	0	27	110	218	301	2.64e-22	90.1
MsaG019459	MtrunA17_Chr6g0458391	47.436	78	40	1	33	110	90	166	1.35e-16	73.9
MsaG019459	MtrunA17_Chr1g0203721	43.373	83	47	0	28	110	57	139	2.64e-18	79.0
MsaG019459	MtrunA17_Chr4g0033611	43.373	83	46	1	28	110	70	151	7.01e-16	70.9
MsaG019459	MtrunA17_Chr2g0329421	44.156	77	42	1	34	110	27	102	3.96e-15	68.2
MsaG019459	MtrunA17_Chr5g0448761	44.444	81	42	1	34	111	60	140	1.52e-12	62.4
MsaG019459	MtrunA17_Chr3g0078041	39.744	78	46	1	34	110	50	127	3.00e-11	57.8
MsaG019459	MtrunA17_Chr7g0233911	34.375	96	50	2	24	112	24	113	3.34e-11	57.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019459	AT3G59470.3	44.156	77	42	1	34	110	70	145	1.47e-14	67.4
MsaG019459	AT3G59470.1	44.156	77	42	1	34	110	70	145	1.47e-14	67.4
MsaG019459	AT3G59470.2	44.156	77	42	1	34	110	82	157	1.88e-14	67.4
MsaG019459	AT5G18960.2	35.484	93	47	1	18	110	27	106	6.35e-13	63.9
MsaG019459	AT5G18960.1	35.484	93	47	1	18	110	27	106	6.35e-13	63.9
MsaG019459	AT4G38180.1	40.426	94	53	1	21	111	60	153	1.08e-12	63.2
MsaG019459	AT3G07500.1	35.135	111	69	2	1	110	1	109	8.99e-11	57.0

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Find 25 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGGTATTGCCAATAG+TGG	0.470618	4:+29005031	MsaT019459.1:CDS
AAGATTCACATGCTTCAAAG+AGG	0.642884	4:+29005189	MsaT019459.1:CDS
AATGAAGTTTGAATCTGAGA+CGG	0.638568	4:+29005066	MsaT019459.1:CDS
AATGATTACAGTAAAAGAAT+TGG	0.346045	4:+29005106	MsaT019459.1:CDS
ACCCATTTATCGACGGAATC+TGG	0.290558	4:-29004974	None:intergenic
ACTCGCTGTGCATCCTGTTC+TGG	0.289317	4:-29005266	None:intergenic
AGATTCACATGCTTCAAAGA+GGG	0.654356	4:+29005190	MsaT019459.1:CDS
ATATGGAAATAAAAGCAGAA+TGG	0.588771	4:+29005147	MsaT019459.1:CDS
ATGCTTCAAAGAGGGTACGC+GGG	0.657915	4:+29005198	MsaT019459.1:CDS
ATTGTTCACCCATTTATCGA+CGG	0.574582	4:-29004981	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	29004956	29005294	29004956	ID=MsaG019459
Chr4	mRNA	29004956	29005294	29004956	ID=MsaT019459.1;Parent=MsaG019459
Chr4	exon	29004956	29005294	29004956	ID=MsaT019459.1.exon1;Parent=MsaT019459.1
Chr4	CDS	29004956	29005294	29004956	ID=cds.MsaT019459.1;Parent=MsaT019459.1

Gene Sequence	>MsaT019459.1 ATGGATTCATCATCAATTCCAGATTCCGTCGATAAATGGGTGAACAATATCCATGAACAAAATGTTCATCACGAAAAAGAAGGTATTGCCAATAGTGGACCTCACTTGGGAATGAAGTTTGAATCTGAGACGGCGGCATATGAATTTCATAATGATTACAGTAAAAGAATTGGATTTGGTATTCGTCGAGAATATGGAAATAAAAGCAGAATGGATGGAGTTTTGACTTCGAGAAGATTCACATGCTTCAAAGAGGGTACGCGGGTTGTTGACAAAAGACGTCAACCGACGGCGGAGTCTAGAGTAGAAACCAGAACAGGATGCACAGCGAGTTGTTAA
Protein sequence	>MsaT019459.1 MDSSSIPDSVDKWVNNIHEQNVHHEKEGIANSGPHLGMKFESETAAYEFHNDYSKRIGFGIRREYGNKSRMDGVLTSRRFTCFKEGTRVVDKRRQPTAESRVETRTGCTASC*