AlfalfaGEDB | MsaG019507

M. sativa ssp. caerulea / MsaG019507

KEGG: -
GO: GO:0000003 GO:0001763 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010016 GO:0010065 GO:0010067 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010346 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071944 GO:1905393
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019507	XP_013455390.1	85.453	1038	49	4	1	936	1	1038	0.0	1691

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019507	sp\|Q9FII5\|TDR_ARATH	56.334	971	309	14	47	908	49	1013	0.0	1013

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019507	tr\|A0A072UJ35\|A0A072UJ35_MEDTR	85.453	1038	49	4	1	936	1	1038	0.0	1691

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000009	MsaG019507	0.848823	9.091063e-60	4.733023e-57
MsaG000137	MsaG019507	0.810107	2.322238e-50	3.976119e-48
MsaG000138	MsaG019507	0.835111	3.697970e-56	1.242803e-53
MsaG000537	MsaG019507	0.803680	5.232245e-49	7.693211e-47
MsaG000705	MsaG019507	0.807988	6.571784e-50	1.069170e-47
MsaG000994	MsaG019507	0.802862	7.711324e-49	1.112600e-46
MsaG001007	MsaG019507	0.821172	8.168193e-53	1.853125e-50
MsaG001030	MsaG019507	0.802756	8.107638e-49	1.166950e-46
MsaG001031	MsaG019507	0.831437	3.012776e-55	9.087084e-53
MsaG001045	MsaG019507	0.803294	6.283624e-49	9.157088e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019507	MtrunA17_Chr4g0018701	85.453	1038	49	4	1	936	1	1038	0.0	1691
MsaG019507	MtrunA17_Chr4g0018651	63.952	1007	233	13	1	904	1	980	0.0	1188
MsaG019507	MtrunA17_Chr1g0183231	41.081	981	444	20	33	901	26	984	0.0	679
MsaG019507	MtrunA17_Chr1g0190411	41.333	900	457	14	1	847	1	882	0.0	649
MsaG019507	MtrunA17_Chr7g0262141	39.237	1022	478	19	11	916	15	1009	0.0	646
MsaG019507	MtrunA17_Chr4g0018801	73.134	469	76	2	1	423	1	465	0.0	631
MsaG019507	MtrunA17_Chr4g0018801	42.394	710	318	13	277	904	79	779	4.38e-146	452
MsaG019507	MtrunA17_Chr4g0018801	28.723	376	240	5	183	555	83	433	8.28e-35	143
MsaG019507	MtrunA17_Chr4g0054521	37.346	972	465	21	36	898	30	966	8.67e-180	547
MsaG019507	MtrunA17_Chr2g0304981	36.373	987	481	22	8	897	3	939	1.60e-177	539

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019507	AT5G61480.1	56.334	971	309	14	47	908	49	1013	0.0	1013
MsaG019507	AT4G28650.1	40.466	902	453	21	1	847	3	875	0.0	606
MsaG019507	AT1G08590.1	38.095	987	511	23	3	915	4	964	0.0	576
MsaG019507	AT5G65700.1	39.155	876	432	17	36	847	28	866	0.0	562
MsaG019507	AT5G65700.2	39.155	876	432	17	36	847	28	866	0.0	562
MsaG019507	AT4G20270.1	39.537	908	459	18	2	847	4	883	0.0	551
MsaG019507	AT3G49670.1	38.417	872	444	17	33	847	27	862	0.0	550
MsaG019507	AT1G75820.1	35.736	971	476	24	37	893	31	967	1.01e-169	520
MsaG019507	AT1G28440.1	35.348	877	464	16	37	847	23	862	4.12e-152	475
MsaG019507	AT5G48940.1	33.556	900	494	15	105	916	201	1084	5.80e-147	465

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Find 236 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGCCGGCGCAATCGTT+TGG	0.381084	4:+29913930	MsaT019507.1:CDS
AAACTGCACCTCACTCGTTA+GGG	0.501837	4:+29913232	MsaT019507.1:CDS
AAAGCTTTGGTCAAAACAAA+AGG	0.474470	4:+29914216	MsaT019507.1:CDS
AACAAAATCGGGAATTTGAC+CGG	0.471444	4:-29913486	None:intergenic
AACACAACATCTCTCATTGA+AGG	0.467290	4:-29915930	None:intergenic
AACACCAAATTGGGTCTTGG+TGG	0.500203	4:-29912176	None:intergenic
AACCTAAGCTTTGAAATTCC+AGG	0.357126	4:-29912429	None:intergenic
AACGACGCTAACGGCGAAGT+TGG	0.496699	4:+29914043	MsaT019507.1:CDS
AACTAGCTTTCATTGGTAAT+TGG	0.197041	4:-29916071	None:intergenic
AACTATAACCGTCGATTTAA+CGG	0.286375	4:+29914019	MsaT019507.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	29911988	29916091	29911988	ID=MsaG019507
Chr4	mRNA	29911988	29916091	29911988	ID=MsaT019507.1;Parent=MsaG019507
Chr4	exon	29911988	29912798	29911988	ID=MsaT019507.1.exon1;Parent=MsaT019507.1
Chr4	CDS	29911988	29912798	29911988	ID=cds.MsaT019507.1;Parent=MsaT019507.1
Chr4	exon	29912937	29914667	29912937	ID=MsaT019507.1.exon2;Parent=MsaT019507.1
Chr4	CDS	29912937	29914667	29912937	ID=cds.MsaT019507.1;Parent=MsaT019507.1
Chr4	exon	29915823	29916091	29915823	ID=MsaT019507.1.exon3;Parent=MsaT019507.1
Chr4	CDS	29915823	29916091	29915823	ID=cds.MsaT019507.1;Parent=MsaT019507.1

Gene Sequence

>MsaT019507.1

ATGAAACCTTTTCTATTCTTTCTCATCACATTCTTCTTCTTTTCCCAAACACAGTTACTGCCACTAGTTTCCTCTGCCACAACCACTATTCCCTTTCAACTCATCTCCCTCCTCTCAATAAAATCCTCCCTCATTGACCCTCTAAATCATCTCAATGATTGGAAAAATTACCCTTCTAATTCCAACAACCACCAAGACCCAATTTGGTGTTCTTGGACAGGAATCAATTGCCACCCAAAAACAGCTCAAATTACTTCCCTAAACCTCTCTAACCTCAACCTTTCAGGCATAATCTCGCCCAAAATCCGCTACTTAACCACGTTAACTCACTTGAACATTAGTGGAAATGACTTCAATGGAACTTTCCAAACATCAATTTTTGAACTCACTGAGCTTAGAACACTAGACATCAGCCATAATTCCTTCAACTCAACTTTCCCACCTGGAATTTCAAAGCTTAGGTTCTTAAGAATCTTCAATGCTTACAGTAACAGTTTCACAGGCCCTCTCCCTGAAGAACTTATCAGGCTACCCTTTCTAGAACACCTTAACCTAGGTGGAAGCTACTTCAATGGCAAAATCCCTCCAAGCTATGGAAGTTTTAAAAGACTCAAATTTCTAGATTTAGCTGGTAATGCATTGGAAGGTTCACTACCACCTCAACTAGGCTTATTATCAGAGTTACAACGCTTGGAAATCGGATACAACTCATACTCAGGAACAATACCAGTGGAATTAACAATGTTGCCTAATCTCAAGTACTTGGATATTGCAGGTGCCAACATTTCTGGTGAAGTGATTCCTGAACTAGAAATAACAATGTTGAACGAGCTAGTAGATTTGAGGCTCATGTATAACAAGCTAAAAGGTGAAATTCCACAAGAAATTGGTGAACTTCCGAAACTCAACACTTTCCTTATTTTCAACAACTCATTCACCGGTGCATTACCACCAAAACTCGGTTCCAATGGATTACTACAATTACTCGATGTTTCCACAAACTCGCTCCAAGGTTCAATCCCTATCAACATTTGCAAAGGAAACAATCTTGTAAAGTTCAATCTCTTCAACAACAAATTCACCAATACTCTTCCATCATCACTCACAAACTGCACCTCACTCGTTAGGGTTCGTATCCAAAACAACAATCTCAATGGGTCAATTCCACAAACACTTACAATGCTTCCTAATTTAACCTACCTTGACTTGAGCAACAACGATTTCAAAGGTGAAATTCCTCAAGAATTCGGAAACCTACAATACCTAAACATCTCATGCAACTCTTTTGAAAGCGTATTACCTAGCAGCATTTGGAATTCAAGTAATCTTCAAATTTTCTCAGCTTCATTTTCAAAAATCACCGGTCAAATTCCCGATTTTGTTGATTGCAAATCGATCTACAAGATCGAATTACAAGGAAATTCAATCACCGGCACAATTCCATGGAACATTGGTGATTGTGAAAAACTGCTTCAGTTAAACCTAAGCAAAAACAACCTCACCGGAATCATTCCTTACGAAATCTCAACTCTTCCTTCAATCACCGACGTTGATCTCTCGCAGAATTCACTCACCGGAACAATTCCTTCAAGTTTCAACAACTGCTCAACTCTCGAGAATTTCAACATCAGTTTCAATTCCCTCACCGGTCCAATCCCTTCCTCCGGCGTCTTTCAAAGCCTCCACCCTTCTTCCTACTCCGGCAACGAAAATCTCTGCGGTCGGTTTTTAGCAAAACCCTGCGCCGACGATGTACTCACCGCCGGCGAAAACGAACTCGAAGTTCACCGTCAACAACCGAAGAAAACCGCCGGCGCAATCGTTTGGATAATCGCCGCCGCGTTTGGGATCGGACTCTTCGTTCTCGTCGCCGGAACACGGTGTTTTCAAACAAACTATAACCGTCGATTTAACGGTAACGACGCTAACGGCGAAGTTGGACCGTGGAAGTTAACGGCGTTTCAACGGTTAAATTTCACGGCGGAAGACGTTCTCGAATGCGTTTCAATGTCTGATAAAATCTTAGGAATGGGATCCACTGGAACTGTCTATAAAGCGGAACTGCCAGGTGGTGAAATCATAGCCGTCAAAAAGCTTTGGTCAAAACAAAAGGAGAATAGTAGTATAATCCGACGGAGGAGAGGGGTTTTAGCTGAAGTGGATGTATTAGGAAATGTGAGACACAGGAATATTGTGAGATTGTTAGGGTGTTGTAGTAACAAGGAAATTACCATGTTGCTTTACGAGTATATGCCAAATGGTAACCTTGATGAGTTTTTGCATGCAAAGAATAAGGGGGACAATATGGTAATTGCGAGTGATTGGTTTACTAGGTATAAGATAGCTTTGGGTGTGGCACAGGGGATAAGTTATCTACACCATGATTGTGATCCTGTGATCGTGCATAGAGATCTTAAACCTAGTAATATTTTGTTGGACGGTGAGATGGAAGCTAGGGTGGCAGATTTTGGTGTTGCTAAATTGATTCAAACTGATGAGTCTATGTCTGTTATTGCTGGTTCTTATGGTTACATCGCTCCGGGTATATTGGACAAGAATGCAGGGGCAGGGTGTAATTCAGTGAGGGAAGAAATGAAACAAATGCTTAGAATTGCATTGCTTTGCACAAGTAGAAATCCAGCTGATAGACCTTCAATGAGAGATGTTGTGTTGATGCTTCAAGCTGCTAAACCTAAAAGGAAATTGTTTGATAGTGTTGTTGTAAGTCATTGTGCTAGTGGTGACAATGTTGATGGTGGTGGAGGTGGTGATATTCCAATGGCTCAAAAGCCAATTACCAATGAAAGCTAG

Protein sequence

>MsaT019507.1

MKPFLFFLITFFFFSQTQLLPLVSSATTTIPFQLISLLSIKSSLIDPLNHLNDWKNYPSNSNNHQDPIWCSWTGINCHPKTAQITSLNLSNLNLSGIISPKIRYLTTLTHLNISGNDFNGTFQTSIFELTELRTLDISHNSFNSTFPPGISKLRFLRIFNAYSNSFTGPLPEELIRLPFLEHLNLGGSYFNGKIPPSYGSFKRLKFLDLAGNALEGSLPPQLGLLSELQRLEIGYNSYSGTIPVELTMLPNLKYLDIAGANISGEVIPELEITMLNELVDLRLMYNKLKGEIPQEIGELPKLNTFLIFNNSFTGALPPKLGSNGLLQLLDVSTNSLQGSIPINICKGNNLVKFNLFNNKFTNTLPSSLTNCTSLVRVRIQNNNLNGSIPQTLTMLPNLTYLDLSNNDFKGEIPQEFGNLQYLNISCNSFESVLPSSIWNSSNLQIFSASFSKITGQIPDFVDCKSIYKIELQGNSITGTIPWNIGDCEKLLQLNLSKNNLTGIIPYEISTLPSITDVDLSQNSLTGTIPSSFNNCSTLENFNISFNSLTGPIPSSGVFQSLHPSSYSGNENLCGRFLAKPCADDVLTAGENELEVHRQQPKKTAGAIVWIIAAAFGIGLFVLVAGTRCFQTNYNRRFNGNDANGEVGPWKLTAFQRLNFTAEDVLECVSMSDKILGMGSTGTVYKAELPGGEIIAVKKLWSKQKENSSIIRRRRGVLAEVDVLGNVRHRNIVRLLGCCSNKEITMLLYEYMPNGNLDEFLHAKNKGDNMVIASDWFTRYKIALGVAQGISYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPGILDKNAGAGCNSVREEMKQMLRIALLCTSRNPADRPSMRDVVLMLQAAKPKRKLFDSVVVSHCASGDNVDGGGGGDIPMAQKPITNES*