AlfalfaGEDB | MsaG019527

M. sativa ssp. caerulea / MsaG019527

KEGG: K01082
GO: -
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019527	XP_024636235.1	94.650	243	13	0	1	243	1	243	1.25e-171	482

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019527	sp\|Q9M202\|ZAT9_ARATH	30.566	265	116	6	9	229	6	246	6.01e-18	84.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019527	tr\|A0A396I2K7\|A0A396I2K7_MEDTR	67.347	245	74	1	1	239	1	245	1.12e-113	335

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TFs/TRs:

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Gene ID	Type	Classification
MsaG019527	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000459	MsaG019527	0.832257	1.895465e-55	5.855096e-53
MsaG000717	MsaG019527	0.908603	3.423857e-81	2.957518e-77
MsaG000847	MsaG019527	0.816669	8.527140e-52	1.719741e-49
MsaG001026	MsaG019527	0.830661	4.661868e-55	1.374871e-52
MsaG001551	MsaG019527	0.872205	7.795570e-67	9.923198e-64
MsaG001939	MsaG019527	0.866315	6.261223e-65	6.235164e-62
MsaG002043	MsaG019527	0.840179	1.878424e-57	7.373976e-55
MsaG002379	MsaG019527	0.886807	5.379096e-72	1.346963e-68
MsaG002489	MsaG019527	0.877820	9.677841e-69	1.579795e-65
MsaG002603	MsaG019527	0.884308	4.598359e-71	1.018484e-67

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019527	MtrunA17_Chr4g0018761	67.347	245	74	1	1	239	1	245	2.16e-117	335
MsaG019527	MtrunA17_Chr4g0018741	80.769	104	20	0	78	181	1	104	1.43e-56	176
MsaG019527	MtrunA17_Chr3g0079061	26.038	265	158	6	3	229	2	266	1.72e-16	76.6
MsaG019527	MtrunA17_Chr3g0079131	25.806	279	139	7	7	232	6	269	1.86e-16	76.6
MsaG019527	MtrunA17_Chr4g0056091	59.322	59	22	1	173	229	210	268	4.77e-14	70.5
MsaG019527	MtrunA17_Chr7g0231181	41.975	81	37	1	170	240	239	319	6.68e-14	70.1
MsaG019527	MtrunA17_Chr3g0079091	35.484	124	74	3	3	121	2	124	1.69e-12	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019527	AT3G60580.1	30.566	265	116	6	9	229	6	246	6.11e-19	84.0
MsaG019527	AT1G02030.1	45.570	79	30	2	171	236	160	238	1.84e-13	68.6
MsaG019527	AT5G61470.1	43.836	73	29	2	168	229	225	296	1.24e-12	66.6

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Find 64 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGATGGCGAAAGCAGTAC+AGG	0.507873	4:-30164831	MsaT019527.1:CDS
AAGAGCGATGGGAAAGCCTG+TGG	0.598960	4:-30165278	MsaT019527.1:CDS
AAGCAAATTGATTTCGACGA+TGG	0.551421	4:+30165126	None:intergenic
AAGCCAGGTTCAACTGTGAG+AGG	0.622627	4:-30164782	MsaT019527.1:CDS
AAGTCTGCTCAGGCACTCGG+TGG	0.670340	4:-30164636	MsaT019527.1:CDS
AATTGGATCTCTTGCGGGTT+GGG	0.313326	4:+30164982	None:intergenic
ACCCGCAAGAGATCCAATTG+CGG	0.686880	4:-30164978	MsaT019527.1:CDS
ACTTTGAAATCCATTAGCAC+TGG	0.550464	4:+30164593	None:intergenic
AGAGCGATGGGAAAGCCTGT+GGG	0.654994	4:-30165277	MsaT019527.1:CDS
AGATCTCATGTGGCCTCCAA+GGG	0.485485	4:+30165223	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	30164575	30165306	30164575	ID=MsaG019527
Chr4	mRNA	30164575	30165306	30164575	ID=MsaT019527.1;Parent=MsaG019527
Chr4	exon	30164575	30165306	30164575	ID=MsaT019527.1.exon1;Parent=MsaT019527.1
Chr4	CDS	30164575	30165306	30164575	ID=cds.MsaT019527.1;Parent=MsaT019527.1

Gene Sequence

>MsaT019527.1

ATGGAGAAGAGCGATGGGAAAGCCTGTGGGATTTGTGGGAAGTGGTTCTCCGGTGGGAAAGCCCTTGGAGGCCACATGAGATCTCACATGGTTCATTTGCCGATTGCTCCAAAGCTTGAAACTAATACTCAAGCTGTAGACAATTCGGCCGATTCAACCCATCGTCGAAATCAATTTGCTTCCTCACAGACTTGCCTTCCCGAAATACAACAAACACAGAATTTCCTATCCATGAAACAAAACTTCGCTGCCTCCTCTGCAAACTCAAACAGAGAAAATGAATCTGTGTCCAACCTGAAAAACCCAACCCGCAAGAGATCCAATTGCGGCCGCGAACTTAATGCTGCGGCTGATACAGAAGATATGTCAAGAGATCCAGGTGTTTTGATGTTATGGGGATTTTACAAAGATGCGCAAAAAAGGGAAGGGATCAAGAAACAAAAAATGAGGGAAAACGATGGCGAAAGCAGTACAGGTGACTCGCTTGCACAAGCAGACTCTGAAGCCAGGTTCAACTGTGAGAGGTGCGGAAAAATGTTCCGATCTTATCAGGCTCTTGGTGGGCACAGAGTATACTGCAAAAGAGGCAATGATGGTGATTCAATAGATCAGAAACCTTTTCACTGCCCAAATTGCAACAAAGTGTTCAAGTCTGCTCAGGCACTCGGTGGACACAAGAGGGTACACTCTTCCAGTGCTAATGGATTTCAAAGTGTGCCACACCCGTATTGA

Protein sequence

>MsaT019527.1

MEKSDGKACGICGKWFSGGKALGGHMRSHMVHLPIAPKLETNTQAVDNSADSTHRRNQFASSQTCLPEIQQTQNFLSMKQNFAASSANSNRENESVSNLKNPTRKRSNCGRELNAAADTEDMSRDPGVLMLWGFYKDAQKREGIKKQKMRENDGESSTGDSLAQADSEARFNCERCGKMFRSYQALGGHRVYCKRGNDGDSIDQKPFHCPNCNKVFKSAQALGGHKRVHSSSANGFQSVPHPY*