AlfalfaGEDB | MsaG019527

M. sativa ssp. caerulea / MsaG019527

KEGG: K01082
GO: -
PFAM: PF13912.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019527	XP_024636235.1	94.650	243	13	0	1	243	1	243	1.25e-171	482

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019527	sp\|Q9M202\|ZAT9_ARATH	30.566	265	116	6	9	229	6	246	6.01e-18	84.0

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019527	tr\|A0A396I2K7\|A0A396I2K7_MEDTR	67.347	245	74	1	1	239	1	245	1.12e-113	335

TFs/TRs:

Gene ID	Type	Classification
MsaG019527	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000459	MsaG019527	0.832257	1.895465e-55	5.855096e-53
MsaG000717	MsaG019527	0.908603	3.423857e-81	2.957518e-77
MsaG000847	MsaG019527	0.816669	8.527140e-52	1.719741e-49
MsaG001026	MsaG019527	0.830661	4.661868e-55	1.374871e-52
MsaG001551	MsaG019527	0.872205	7.795570e-67	9.923198e-64
MsaG001939	MsaG019527	0.866315	6.261223e-65	6.235164e-62
MsaG002043	MsaG019527	0.840179	1.878424e-57	7.373976e-55
MsaG002379	MsaG019527	0.886807	5.379096e-72	1.346963e-68
MsaG002489	MsaG019527	0.877820	9.677841e-69	1.579795e-65
MsaG002603	MsaG019527	0.884308	4.598359e-71	1.018484e-67
MsaG003420	MsaG019527	0.858422	1.627736e-62	1.192410e-59
MsaG003665	MsaG019527	0.822617	3.794257e-53	8.946354e-51
MsaG003767	MsaG019527	0.810491	1.921114e-50	3.320282e-48
MsaG003861	MsaG019527	0.878791	4.433016e-69	7.567553e-66
MsaG004006	MsaG019527	0.886359	7.927739e-72	1.941579e-68
MsaG003932	MsaG019527	0.842157	5.705320e-58	2.384401e-55
MsaG003936	MsaG019527	0.833831	7.726672e-56	2.499270e-53
MsaG004107	MsaG019527	0.904482	2.754235e-79	1.839032e-75
MsaG004184	MsaG019527	0.866518	5.399441e-65	5.421504e-62
MsaG004382	MsaG019527	0.821575	6.599666e-53	1.513284e-50
MsaG004388	MsaG019527	0.833202	1.106694e-55	3.514554e-53
MsaG004452	MsaG019527	0.876576	2.606250e-68	4.021142e-65
MsaG004556	MsaG019527	0.826584	4.459828e-54	1.172196e-51
MsaG005060	MsaG019527	0.850271	3.601885e-60	1.970155e-57
MsaG005062	MsaG019527	0.853569	4.215810e-61	2.587876e-58
MsaG005280	MsaG019527	0.810196	2.222516e-50	3.813554e-48
MsaG005336	MsaG019527	0.809985	2.466859e-50	4.211177e-48
MsaG005423	MsaG019527	0.832865	1.341243e-55	4.217182e-53
MsaG005526	MsaG019527	0.845393	7.838555e-59	3.638707e-56
MsaG005603	MsaG019527	0.849827	4.788030e-60	2.579698e-57
MsaG005869	MsaG019527	0.872662	5.494595e-67	7.133538e-64
MsaG006030	MsaG019527	0.831359	3.148517e-55	9.474462e-53
MsaG005917	MsaG019527	0.805377	2.324521e-49	3.555131e-47
MsaG006245	MsaG019527	0.853653	3.990081e-61	2.456660e-58
MsaG006324	MsaG019527	0.818656	3.052783e-52	6.481096e-50
MsaG006471	MsaG019527	0.857805	2.478483e-62	1.774358e-59
MsaG006500	MsaG019527	0.801961	1.180248e-48	1.668137e-46
MsaG006620	MsaG019527	0.804777	3.099922e-49	4.675356e-47
MsaG006809	MsaG019527	0.847687	1.866732e-59	9.354466e-57
MsaG007091	MsaG019527	0.839899	2.220167e-57	8.640055e-55
MsaG007534	MsaG019527	0.829033	1.157003e-54	3.257060e-52
MsaG007630	MsaG019527	0.812711	6.355516e-51	1.160045e-48
MsaG007828	MsaG019527	0.810885	1.580787e-50	2.758394e-48
MsaG007982	MsaG019527	0.825069	1.016669e-53	2.562337e-51
MsaG008234	MsaG019527	0.800589	2.246111e-48	3.077563e-46
MsaG008561	MsaG019527	0.863584	4.458684e-64	3.982165e-61
MsaG008619	MsaG019527	0.895238	2.605730e-75	1.016394e-71
MsaG009656	MsaG019527	0.812018	8.993148e-51	1.613489e-48
MsaG011560	MsaG019527	0.854983	1.654048e-61	1.067867e-58
MsaG011831	MsaG019527	0.844823	1.115391e-58	5.081642e-56
MsaG011887	MsaG019527	0.803130	6.792343e-49	9.861116e-47
MsaG012294	MsaG019527	0.823533	2.325392e-53	5.620504e-51
MsaG012549	MsaG019527	0.863915	3.522389e-64	3.186732e-61
MsaG012723	MsaG019527	0.845351	8.045061e-59	3.729336e-56
MsaG013271	MsaG019527	0.857860	2.387843e-62	1.712923e-59
MsaG013839	MsaG019527	0.806932	1.098093e-49	1.741965e-47
MsaG014076	MsaG019527	0.802259	1.025666e-48	1.459527e-46
MsaG014855	MsaG019527	0.829639	8.257560e-55	2.365324e-52
MsaG015018	MsaG019527	0.802502	9.143581e-49	1.308450e-46
MsaG015371	MsaG019527	0.826517	4.624989e-54	1.213396e-51
MsaG015493	MsaG019527	0.830129	6.280778e-55	1.824460e-52
MsaG015871	MsaG019527	0.807449	8.543930e-50	1.372121e-47
MsaG016209	MsaG019527	0.836952	1.267859e-56	4.503142e-54
MsaG016215	MsaG019527	0.842431	4.831682e-58	2.037254e-55
MsaG016327	MsaG019527	0.917327	1.529205e-85	2.377203e-81
MsaG016419	MsaG019527	0.842399	4.927351e-58	2.075429e-55
MsaG016471	MsaG019527	0.871039	1.889198e-66	2.287805e-63
MsaG016663	MsaG019527	0.843380	2.709116e-58	1.177568e-55
MsaG016695	MsaG019527	0.803748	5.065145e-49	7.459425e-47
MsaG016884	MsaG019527	0.895809	1.518219e-75	6.111430e-72
MsaG017009	MsaG019527	0.884044	5.755764e-71	1.258761e-67
MsaG017051	MsaG019527	0.847959	1.572064e-59	7.950513e-57
MsaG017068	MsaG019527	0.854136	2.900539e-61	1.817007e-58
MsaG017081	MsaG019527	0.805169	2.569013e-49	3.910217e-47
MsaG017189	MsaG019527	0.811198	1.352892e-50	2.378899e-48
MsaG017324	MsaG019527	0.826230	5.410219e-54	1.408059e-51
MsaG017431	MsaG019527	0.800552	2.284660e-48	3.127819e-46
MsaG017644	MsaG019527	0.852156	1.063649e-60	6.212738e-58
MsaG017699	MsaG019527	0.851429	1.706275e-60	9.714771e-58
MsaG017719	MsaG019527	0.813249	4.850831e-51	8.973602e-49
MsaG017827	MsaG019527	0.857029	4.194278e-62	2.917082e-59
MsaG017828	MsaG019527	0.855412	1.242437e-61	8.146960e-59
MsaG017954	MsaG019527	0.892899	2.307966e-74	7.935167e-71
MsaG017983	MsaG019527	0.909140	1.903825e-81	1.702000e-77
MsaG018035	MsaG019527	0.862889	7.298741e-64	6.342155e-61
MsaG018054	MsaG019527	0.815240	1.770557e-51	3.443605e-49
MsaG018085	MsaG019527	0.830317	5.654599e-55	1.651370e-52
MsaG018223	MsaG019527	0.807803	7.190144e-50	1.164584e-47
MsaG018286	MsaG019527	0.806639	1.265322e-49	1.993553e-47
MsaG018777	MsaG019527	0.844137	1.702873e-58	7.585039e-56
MsaG019120	MsaG019527	0.889001	7.834615e-73	2.192404e-69
MsaG019160	MsaG019527	0.875851	4.618408e-68	6.898572e-65
MsaG019223	MsaG019527	0.884554	3.732568e-71	8.364328e-68
MsaG019466	MsaG019527	0.833398	9.894648e-56	3.160322e-53
MsaG019527	MsaG019638	0.823712	2.112848e-53	5.131846e-51
MsaG019527	MsaG019720	0.831824	2.421694e-55	7.387834e-53
MsaG019527	MsaG019907	0.879682	2.152333e-69	3.827804e-66
MsaG019527	MsaG019936	0.850297	3.541684e-60	1.938949e-57
MsaG019527	MsaG020021	0.880943	7.663055e-70	1.445570e-66
MsaG019527	MsaG020233	0.835468	3.008396e-56	1.021922e-53
MsaG019527	MsaG020240	0.813046	5.372407e-51	9.888451e-49
MsaG019527	MsaG020382	0.887059	4.320519e-72	1.095440e-68
MsaG019527	MsaG020548	0.812170	8.332793e-51	1.500589e-48
MsaG019527	MsaG020550	0.812561	6.853145e-51	1.246231e-48
MsaG019527	MsaG020733	0.888927	8.367137e-73	2.332216e-69
MsaG019527	MsaG020992	0.816736	8.239715e-52	1.664689e-49
MsaG019527	MsaG021200	0.802545	8.959801e-49	1.283431e-46
MsaG019527	MsaG021222	0.814011	3.304244e-51	6.230375e-49
MsaG019527	MsaG022811	0.906772	2.466622e-80	1.893921e-76
MsaG019527	MsaG022899	0.807606	7.915796e-50	1.276007e-47
MsaG019527	MsaG023188	0.911395	1.554348e-82	1.608545e-78
MsaG019527	MsaG023563	0.821067	8.632825e-53	1.953084e-50
MsaG019527	MsaG023649	0.874738	1.104412e-67	1.570132e-64
MsaG019527	MsaG023711	0.862805	7.747223e-64	6.710202e-61
MsaG019527	MsaG023716	0.862601	8.944321e-64	7.685377e-61
MsaG019527	MsaG023729	0.837934	7.120948e-57	2.606394e-54
MsaG019527	MsaG023793	0.882279	2.534225e-70	5.089135e-67
MsaG019527	MsaG023794	0.807179	9.738287e-50	1.553938e-47
MsaG019527	MsaG023834	0.852907	6.512426e-61	3.905404e-58
MsaG019527	MsaG023861	0.852911	6.495178e-61	3.895665e-58
MsaG019527	MsaG024134	0.853776	3.678510e-61	2.274940e-58
MsaG019527	MsaG024295	0.804158	4.166068e-49	6.193970e-47
MsaG019527	MsaG024480	0.856811	4.859577e-62	3.353252e-59
MsaG019527	MsaG025067	0.806336	1.464675e-49	2.291213e-47
MsaG019527	MsaG025143	0.890827	1.528519e-73	4.703360e-70
MsaG019527	MsaG025153	0.867785	2.137313e-65	2.259894e-62
MsaG019527	MsaG025641	0.824253	1.579734e-53	3.893513e-51
MsaG019527	MsaG026475	0.814687	2.346214e-51	4.499663e-49
MsaG019527	MsaG026686	0.859703	6.754227e-63	5.192417e-60
MsaG019527	MsaG026692	0.843346	2.765345e-58	1.200746e-55
MsaG019527	MsaG026786	0.806045	1.685316e-49	2.618193e-47
MsaG019527	MsaG027170	0.873170	3.721820e-67	4.940246e-64
MsaG019527	MsaG027198	0.888574	1.143776e-72	3.131512e-69
MsaG019527	MsaG027207	0.878439	5.886885e-69	9.883526e-66
MsaG019527	MsaG027210	0.898559	1.075876e-76	5.060117e-73
MsaG019527	MsaG027291	0.861040	2.672735e-63	2.161995e-60
MsaG019527	MsaG027483	0.831787	2.472726e-55	7.535465e-53
MsaG019527	MsaG027511	0.805226	2.499007e-49	3.808644e-47
MsaG019527	MsaG027572	0.809136	3.745893e-50	6.265081e-48
MsaG019527	MsaG027738	0.800192	2.703047e-48	3.670488e-46
MsaG019527	MsaG027828	0.920943	1.732158e-87	3.497544e-83
MsaG019527	MsaG027963	0.838012	6.800953e-57	2.495187e-54
MsaG019527	MsaG028028	0.817423	5.784228e-52	1.189498e-49
MsaG019527	MsaG028191	0.825721	7.136633e-54	1.831383e-51
MsaG019527	MsaG028193	0.847837	1.697801e-59	8.551763e-57
MsaG019527	MsaG028211	0.824070	1.743139e-53	4.275015e-51
MsaG019527	MsaG028335	0.848029	1.504140e-59	7.625167e-57
MsaG019527	MsaG028420	0.859140	9.951092e-63	7.488422e-60
MsaG019527	MsaG028531	0.861850	1.517617e-63	1.266201e-60
MsaG019527	MsaG028781	0.817267	6.267132e-52	1.283678e-49
MsaG019527	MsaG029048	0.862860	7.452856e-64	6.468627e-61
MsaG019527	MsaG029091	0.866316	6.253189e-65	6.227549e-62
MsaG019527	MsaG029212	0.814982	2.018752e-51	3.900733e-49
MsaG019527	MsaG029307	0.839687	2.519159e-57	9.738502e-55
MsaG019527	MsaG029561	0.844161	1.677409e-58	7.477441e-56
MsaG019527	MsaG029546	0.891798	6.330023e-74	2.050379e-70
MsaG019527	MsaG029953	0.887323	3.430602e-72	8.817845e-69
MsaG019527	MsaG029928	0.830048	6.573997e-55	1.905187e-52
MsaG019527	MsaG030649	0.805507	2.184224e-49	3.350548e-47
MsaG019527	MsaG031129	0.893185	1.772308e-74	6.185633e-71
MsaG019527	MsaG032115	0.805122	2.627406e-49	3.994615e-47
MsaG019527	MsaG032279	0.816670	8.521135e-52	1.718601e-49
MsaG019527	MsaG032848	0.904223	3.606992e-79	2.371558e-75
MsaG019527	MsaG032901	0.857574	2.899191e-62	2.057670e-59
MsaG019527	MsaG033781	0.808955	4.094990e-50	6.819053e-48
MsaG019527	MsaG034217	0.842793	3.875755e-58	1.653252e-55
MsaG019527	MsaG034108	0.822331	4.418438e-53	1.033836e-50
MsaG019527	MsaG034590	0.833177	1.123038e-55	3.563789e-53
MsaG019527	MsaG034977	0.803560	5.538292e-49	8.120766e-47
MsaG019527	MsaG034974	0.803011	7.185147e-49	1.040287e-46
MsaG019527	MsaG035156	0.801551	1.430958e-48	2.003752e-46
MsaG019527	MsaG035277	0.811714	1.046588e-50	1.863730e-48
MsaG019527	MsaG035380	0.808836	4.340440e-50	7.207187e-48
MsaG019527	MsaG035984	0.838601	4.802568e-57	1.794614e-54
MsaG019527	MsaG036065	0.827786	2.306207e-54	6.268838e-52
MsaG019527	MsaG036279	0.850515	3.078516e-60	1.698299e-57
MsaG019527	MsaG036335	0.840485	1.563318e-57	6.196487e-55
MsaG019527	MsaG036447	0.805479	2.213391e-49	3.393153e-47
MsaG019527	MsaG038749	0.804084	4.315975e-49	6.406006e-47
MsaG019527	MsaG039734	0.834108	6.590006e-56	2.149204e-53
MsaG019527	MsaG040270	0.839097	3.579739e-57	1.358502e-54
MsaG019527	MsaG040504	0.864849	1.805970e-64	1.695994e-61
MsaG019527	MsaG040577	0.906271	4.203576e-80	3.130876e-76
MsaG019527	MsaG040598	0.816395	9.813049e-52	1.965317e-49
MsaG019527	MsaG040600	0.832572	1.584500e-55	4.939608e-53
MsaG019527	MsaG041229	0.810013	2.432930e-50	4.156085e-48
MsaG019527	MsaG041717	0.815113	1.888792e-51	3.661542e-49
MsaG019527	MsaG041754	0.888289	1.470709e-72	3.967927e-69
MsaG019527	MsaG041800	0.844108	1.733174e-58	7.712660e-56
MsaG019527	MsaG042928	0.836291	1.864355e-56	6.491743e-54
MsaG019527	MsaG042996	0.814699	2.331379e-51	4.472653e-49
MsaG019527	MsaG043725	0.868642	1.135018e-65	1.243126e-62
MsaG019527	MsaG043788	0.828100	1.939068e-54	5.317603e-52
MsaG019527	MsaG043817	0.813872	3.543459e-51	6.658537e-49
MsaG019527	MsaG044117	0.857286	3.523210e-62	2.474097e-59
MsaG019527	MsaG044104	0.803101	6.884962e-49	9.989099e-47
MsaG019527	MsaG044200	0.870654	2.526014e-66	3.008650e-63
MsaG019527	MsaG044688	0.823983	1.826450e-53	4.468741e-51
MsaG019527	MsaG044997	0.815632	1.450315e-51	2.848831e-49
MsaG019527	MsaG045284	0.817674	5.080171e-52	1.051445e-49
MsaG019527	MsaG045581	0.833452	9.596854e-56	3.070092e-53
MsaG019527	MsaG045819	0.897702	2.475888e-76	1.109522e-72
MsaG019527	MsaG045969	0.873011	4.204090e-67	5.541275e-64
MsaG019527	MsaG046123	0.811143	1.390511e-50	2.441764e-48
MsaG019527	MsaG046173	0.892908	2.288831e-74	7.873310e-71
MsaG019527	MsaG046206	0.851610	1.517082e-60	8.691687e-58
MsaG019527	MsaG046522	0.855146	1.483486e-61	9.634155e-59
MsaG019527	MsaG046501	0.892934	2.235769e-74	7.700590e-71
MsaG019527	MsaG046503	0.821448	7.059784e-53	1.613333e-50
MsaG019527	MsaG046589	0.852066	1.128027e-60	6.568304e-58
MsaG019527	MsaG046603	0.827713	2.400064e-54	6.510720e-52
MsaG019527	MsaG046902	0.877405	1.348452e-68	2.159567e-65
MsaG019527	MsaG046939	0.868970	8.897224e-66	9.876117e-63
MsaG019527	MsaG046927	0.800797	2.038024e-48	2.805624e-46
MsaG019527	MsaG046975	0.869925	4.366204e-66	5.044086e-63
MsaG019527	MsaG047077	0.809545	3.064844e-50	5.176788e-48
MsaG019527	MsaG047097	0.875507	6.052072e-68	8.901683e-65
MsaG019527	MsaG002654	0.875309	7.072511e-68	1.030969e-64
MsaG019527	MsaG005167	0.823037	3.032738e-53	7.232497e-51
MsaG019527	MsaG002617	0.805637	2.051923e-49	3.157288e-47
MsaG019527	MsaG011183	0.802320	9.961516e-49	1.419615e-46
MsaG019527	MsaG006148	0.863496	4.745482e-64	4.223557e-61
MsaG019527	MsaG012744	0.812582	6.782755e-51	1.234060e-48
MsaG019527	MsaG013496	0.826511	4.641343e-54	1.217478e-51
MsaG019527	MsaG012993	0.817766	4.843444e-52	1.004860e-49
MsaG019527	MsaG022046	0.852308	9.634709e-61	5.657875e-58
MsaG019527	MsaG023179	0.804314	3.867343e-49	5.770663e-47
MsaG019527	MsaG020399	0.826443	4.816345e-54	1.261055e-51
MsaG019527	MsaG018912	0.871725	1.123314e-66	1.400699e-63
MsaG019527	MsaG020128	0.864943	1.687093e-64	1.590288e-61
MsaG019527	MsaG022828	0.815857	1.292657e-51	2.553610e-49
MsaG019527	MsaG019847	0.881340	5.523964e-70	1.061207e-66
MsaG019527	MsaG025092	0.831498	2.910475e-55	8.794200e-53
MsaG019527	MsaG029390	0.884041	5.766650e-71	1.261001e-67
MsaG019527	MsaG026803	0.849059	7.822223e-60	4.105745e-57
MsaG019527	MsaG026407	0.830631	4.742142e-55	1.397317e-52
MsaG019527	MsaG028079	0.874484	1.346072e-67	1.892735e-64
MsaG019527	MsaG033602	0.907152	1.643885e-80	1.293716e-76
MsaG019527	MsaG031012	0.805256	2.463606e-49	3.757227e-47
MsaG019527	MsaG032886	0.825104	9.977244e-54	2.516970e-51
MsaG019527	MsaG034655	0.846857	3.144721e-59	1.532554e-56
MsaG019527	MsaG033082	0.836425	1.724918e-56	6.030546e-54
MsaG019527	MsaG032525	0.834684	4.732527e-56	1.570364e-53
MsaG019527	MsaG031503	0.800084	2.843026e-48	3.851203e-46
MsaG019527	MsaG030566	0.822918	3.231286e-53	7.681262e-51
MsaG019527	MsaG032799	0.802733	8.197385e-49	1.179232e-46
MsaG019527	MsaG031638	0.801138	1.737256e-48	2.409964e-46
MsaG019527	MsaG033259	0.843937	1.925442e-58	8.519551e-56
MsaG019527	MsaG038885	0.802109	1.100718e-48	1.560944e-46
MsaG019527	MsaG036286	0.878053	8.025114e-69	1.324003e-65
MsaG019527	MsaG036043	0.872970	4.338943e-67	5.708442e-64
MsaG019527	MsaG035600	0.819606	1.860570e-52	4.049356e-50
MsaG019527	MsaG037161	0.800815	2.020919e-48	2.783137e-46
MsaG019527	MsaG037383	0.810576	1.842306e-50	3.190588e-48
MsaG019527	MsaG037531	0.844953	1.029673e-58	4.711495e-56
MsaG019527	MsaG036685	0.833692	8.365013e-56	2.695027e-53
MsaG019527	MsaG039797	0.814956	2.045986e-51	3.950721e-49
MsaG019527	MsaG036758	0.865843	8.813015e-65	8.611765e-62
MsaG019527	MsaG041442	0.875378	6.698691e-68	9.794118e-65
MsaG019527	MsaG044977	0.827692	2.428542e-54	6.583956e-52
MsaG019527	MsaG044531	0.847872	1.660597e-59	8.374174e-57
MsaG019527	MsaG043142	0.818429	3.436119e-52	7.251598e-50
MsaG019527	MsaG046854	0.815517	1.537601e-51	3.011442e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019527	MtrunA17_Chr4g0018761	67.347	245	74	1	1	239	1	245	2.16e-117	335
MsaG019527	MtrunA17_Chr4g0018741	80.769	104	20	0	78	181	1	104	1.43e-56	176
MsaG019527	MtrunA17_Chr3g0079061	26.038	265	158	6	3	229	2	266	1.72e-16	76.6
MsaG019527	MtrunA17_Chr3g0079131	25.806	279	139	7	7	232	6	269	1.86e-16	76.6
MsaG019527	MtrunA17_Chr4g0056091	59.322	59	22	1	173	229	210	268	4.77e-14	70.5
MsaG019527	MtrunA17_Chr7g0231181	41.975	81	37	1	170	240	239	319	6.68e-14	70.1
MsaG019527	MtrunA17_Chr3g0079091	35.484	124	74	3	3	121	2	124	1.69e-12	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019527	AT3G60580.1	30.566	265	116	6	9	229	6	246	6.11e-19	84.0
MsaG019527	AT1G02030.1	45.570	79	30	2	171	236	160	238	1.84e-13	68.6
MsaG019527	AT5G61470.1	43.836	73	29	2	168	229	225	296	1.24e-12	66.6

Find 64 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGAACACTTTGTTGCAATT+TGG	0.166386	4:+30164657	None:intergenic
TTCTGTGTTTGTTGTATTTC+GGG	0.187551	4:+30165086	None:intergenic
ATTCTGTGTTTGTTGTATTT+CGG	0.237824	4:+30165085	None:intergenic
AATTGGATCTCTTGCGGGTT+GGG	0.313326	4:+30164982	None:intergenic
TGAACACTTTGTTGCAATTT+GGG	0.315013	4:+30164658	None:intergenic
TGAGTATTAGTTTCAAGCTT+TGG	0.337317	4:+30165176	None:intergenic
GCCGCAATTGGATCTCTTGC+GGG	0.342035	4:+30164977	None:intergenic
GTACACTCTTCCAGTGCTAA+TGG	0.389630	4:-30164603	MsaT019527.1:CDS
CAATTGGATCTCTTGCGGGT+TGG	0.402481	4:+30164981	None:intergenic
TACTCAAGCTGTAGACAATT+CGG	0.436960	4:-30165159	MsaT019527.1:CDS
ATTAAGTTCGCGGCCGCAAT+TGG	0.437633	4:+30164965	None:intergenic
ATTTGTGGGAAGTGGTTCTC+CGG	0.453707	4:-30165254	MsaT019527.1:CDS
GTTTCAAGCTTTGGAGCAAT+CGG	0.454553	4:+30165185	None:intergenic
TTCCGATCTTATCAGGCTCT+TGG	0.457389	4:-30164747	MsaT019527.1:CDS
TTCTCCGGTGGGAAAGCCCT+TGG	0.463478	4:-30165239	MsaT019527.1:CDS
TTGCAATTTGGGCAGTGAAA+AGG	0.463868	4:+30164669	None:intergenic
GGAAAGCCTGTGGGATTTGT+GGG	0.467351	4:-30165268	MsaT019527.1:CDS
GGGAAAGCCTGTGGGATTTG+TGG	0.468727	4:-30165269	MsaT019527.1:CDS
CGATCTTATCAGGCTCTTGG+TGG	0.468794	4:-30164744	MsaT019527.1:CDS
GCCTCCAAGGGCTTTCCCAC+CGG	0.472807	4:+30165235	None:intergenic
AGATCTCATGTGGCCTCCAA+GGG	0.485485	4:+30165223	None:intergenic
TACTGCAAAAGAGGCAATGA+TGG	0.488382	4:-30164711	MsaT019527.1:CDS
TCCGGTGGGAAAGCCCTTGG+AGG	0.494800	4:-30165236	MsaT019527.1:CDS
TTCAAGTCTGCTCAGGCACT+CGG	0.500253	4:-30164639	MsaT019527.1:CDS
CCCCATAACATCAAAACACC+TGG	0.500612	4:+30164909	None:intergenic
GGCCGCAATTGGATCTCTTG+CGG	0.503301	4:+30164976	None:intergenic
TCTGTTTGAGTTTGCAGAGG+AGG	0.504442	4:+30165034	None:intergenic
AACGATGGCGAAAGCAGTAC+AGG	0.507873	4:-30164831	MsaT019527.1:CDS
AGCAAATTGATTTCGACGAT+GGG	0.509489	4:+30165127	None:intergenic
GCACCTCTCACAGTTGAACC+TGG	0.509618	4:+30164779	None:intergenic
ATTTCGACGATGGGTTGAAT+CGG	0.510947	4:+30165136	None:intergenic
CAGCCGCAGCATTAAGTTCG+CGG	0.512384	4:+30164955	None:intergenic
TTCTCTGTTTGAGTTTGCAG+AGG	0.512537	4:+30165031	None:intergenic
GAGATCTCATGTGGCCTCCA+AGG	0.514030	4:+30165222	None:intergenic
GAAGATATGTCAAGAGATCC+AGG	0.516117	4:-30164927	MsaT019527.1:CDS
TGTGGGAAGTGGTTCTCCGG+TGG	0.517822	4:-30165251	MsaT019527.1:CDS
CAAAGTGTTCAAGTCTGCTC+AGG	0.524975	4:-30164646	MsaT019527.1:CDS
CACAGAGTATACTGCAAAAG+AGG	0.526500	4:-30164720	MsaT019527.1:CDS
CACAAGCAGACTCTGAAGCC+AGG	0.539423	4:-30164797	MsaT019527.1:CDS
GGGGACTTGAAAATTCAATA+CGG	0.545028	4:+30164561	None:intergenic
ACTTTGAAATCCATTAGCAC+TGG	0.550464	4:+30164593	None:intergenic
AAGCAAATTGATTTCGACGA+TGG	0.551421	4:+30165126	None:intergenic
GTGTTTGTTGTATTTCGGGA+AGG	0.552910	4:+30165090	None:intergenic
CCTGTGGGATTTGTGGGAAG+TGG	0.558125	4:-30165262	MsaT019527.1:CDS
GGGACTTGAAAATTCAATAC+GGG	0.558578	4:+30164562	None:intergenic
GTGGGAAGTGGTTCTCCGGT+GGG	0.561353	4:-30165250	MsaT019527.1:CDS
TTGAAAATTCAATACGGGTG+TGG	0.569607	4:+30164567	None:intergenic
GATCTTATCAGGCTCTTGGT+GGG	0.571526	4:-30164743	MsaT019527.1:CDS
GCAACTATGGAGAAGAGCGA+TGG	0.579019	4:-30165290	None:intergenic
CACCAAGAGCCTGATAAGAT+CGG	0.582662	4:+30164745	None:intergenic
AAGAGCGATGGGAAAGCCTG+TGG	0.598960	4:-30165278	MsaT019527.1:CDS
AGGCACTCGGTGGACACAAG+AGG	0.606213	4:-30164626	MsaT019527.1:CDS
CAACTATGGAGAAGAGCGAT+GGG	0.616240	4:-30165289	None:intergenic
AAGCCAGGTTCAACTGTGAG+AGG	0.622627	4:-30164782	MsaT019527.1:CDS
GGCACTCGGTGGACACAAGA+GGG	0.632635	4:-30164625	MsaT019527.1:CDS
CCACTTCCCACAAATCCCAC+AGG	0.647858	4:+30165262	None:intergenic
AGAGCGATGGGAAAGCCTGT+GGG	0.654994	4:-30165277	MsaT019527.1:CDS
CGGCCGCGAACTTAATGCTG+CGG	0.660556	4:-30164958	MsaT019527.1:CDS
AGGTTCAACTGTGAGAGGTG+CGG	0.663022	4:-30164777	MsaT019527.1:CDS
TTCGGGAAGGCAAGTCTGTG+AGG	0.669270	4:+30165103	None:intergenic
AAGTCTGCTCAGGCACTCGG+TGG	0.670340	4:-30164636	MsaT019527.1:CDS
AGGCCACATGAGATCTCACA+TGG	0.682156	4:-30165216	MsaT019527.1:CDS
ACCCGCAAGAGATCCAATTG+CGG	0.686880	4:-30164978	MsaT019527.1:CDS
GAACCATGTGAGATCTCATG+TGG	0.730676	4:+30165213	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	30164575	30165306	30164575	ID=MsaG019527
Chr4	mRNA	30164575	30165306	30164575	ID=MsaT019527.1;Parent=MsaG019527
Chr4	exon	30164575	30165306	30164575	ID=MsaT019527.1.exon1;Parent=MsaT019527.1
Chr4	CDS	30164575	30165306	30164575	ID=cds.MsaT019527.1;Parent=MsaT019527.1

Gene Sequence

>MsaT019527.1

ATGGAGAAGAGCGATGGGAAAGCCTGTGGGATTTGTGGGAAGTGGTTCTCCGGTGGGAAAGCCCTTGGAGGCCACATGAGATCTCACATGGTTCATTTGCCGATTGCTCCAAAGCTTGAAACTAATACTCAAGCTGTAGACAATTCGGCCGATTCAACCCATCGTCGAAATCAATTTGCTTCCTCACAGACTTGCCTTCCCGAAATACAACAAACACAGAATTTCCTATCCATGAAACAAAACTTCGCTGCCTCCTCTGCAAACTCAAACAGAGAAAATGAATCTGTGTCCAACCTGAAAAACCCAACCCGCAAGAGATCCAATTGCGGCCGCGAACTTAATGCTGCGGCTGATACAGAAGATATGTCAAGAGATCCAGGTGTTTTGATGTTATGGGGATTTTACAAAGATGCGCAAAAAAGGGAAGGGATCAAGAAACAAAAAATGAGGGAAAACGATGGCGAAAGCAGTACAGGTGACTCGCTTGCACAAGCAGACTCTGAAGCCAGGTTCAACTGTGAGAGGTGCGGAAAAATGTTCCGATCTTATCAGGCTCTTGGTGGGCACAGAGTATACTGCAAAAGAGGCAATGATGGTGATTCAATAGATCAGAAACCTTTTCACTGCCCAAATTGCAACAAAGTGTTCAAGTCTGCTCAGGCACTCGGTGGACACAAGAGGGTACACTCTTCCAGTGCTAATGGATTTCAAAGTGTGCCACACCCGTATTGA

Protein sequence

>MsaT019527.1

MEKSDGKACGICGKWFSGGKALGGHMRSHMVHLPIAPKLETNTQAVDNSADSTHRRNQFASSQTCLPEIQQTQNFLSMKQNFAASSANSNRENESVSNLKNPTRKRSNCGRELNAAADTEDMSRDPGVLMLWGFYKDAQKREGIKKQKMRENDGESSTGDSLAQADSEARFNCERCGKMFRSYQALGGHRVYCKRGNDGDSIDQKPFHCPNCNKVFKSAQALGGHKRVHSSSANGFQSVPHPY*