AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG019538

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG019538 MtrunA17_Chr4g0018951 89.474 171 14 1 1 171 3 169 6.69e-101 287
MsaG019538 MtrunA17_Chr2g0333981 67.081 161 49 1 1 157 3 163 1.29e-74 221
MsaG019538 MtrunA17_Chr8g0379021 65.217 161 52 1 1 157 3 163 1.05e-73 219
MsaG019538 MtrunA17_Chr4g0071601 62.573 171 50 3 1 157 3 173 8.39e-63 191
MsaG019538 MtrunA17_Chr3g0119901 41.358 162 87 2 4 157 3 164 2.23e-37 127
MsaG019538 MtrunA17_Chr1g0206701 43.038 158 76 3 6 152 5 159 8.50e-37 127
MsaG019538 MtrunA17_Chr8g0355091 43.038 158 76 3 6 152 5 159 2.78e-36 125
MsaG019538 MtrunA17_Chr1g0149391 42.405 158 77 4 6 152 5 159 4.09e-36 125
MsaG019538 MtrunA17_Chr2g0292791 43.671 158 75 3 6 152 5 159 6.57e-36 124
MsaG019538 MtrunA17_Chr1g0206991 43.038 158 76 3 6 152 5 159 7.30e-36 123
MsaG019538 MtrunA17_Chr1g0206721 42.405 158 77 3 6 152 5 159 7.48e-36 124
MsaG019538 MtrunA17_Chr3g0099421 43.038 158 76 3 6 152 30 184 2.54e-35 124
MsaG019538 MtrunA17_Chr3g0085241 40.994 161 87 2 5 157 36 196 4.53e-35 123
MsaG019538 MtrunA17_Chr1g0208561 41.040 173 88 4 6 167 5 174 6.78e-33 116
MsaG019538 MtrunA17_Chr3g0089141 41.040 173 88 4 6 167 5 174 1.38e-32 115
MsaG019538 MtrunA17_Chr5g0422421 41.290 155 83 3 6 152 5 159 8.28e-32 114
MsaG019538 MtrunA17_Chr1g0208581 39.306 173 91 3 6 167 5 174 1.13e-31 113
MsaG019538 MtrunA17_Chr2g0325971 39.884 173 90 3 6 167 5 174 1.29e-31 113
MsaG019538 MtrunA17_Chr5g0419601 38.065 155 88 2 6 152 5 159 2.04e-31 113
MsaG019538 MtrunA17_Chr3g0099411 45.385 130 60 3 6 127 5 131 2.24e-30 110
MsaG019538 MtrunA17_Chr1g0188671 39.766 171 73 4 6 157 43 202 1.62e-29 109
MsaG019538 MtrunA17_Chr1g0187361 37.500 160 92 2 6 157 5 164 3.25e-29 107
MsaG019538 MtrunA17_Chr5g0422941 37.342 158 83 3 6 151 5 158 4.02e-29 107
MsaG019538 MtrunA17_Chr2g0317451 37.107 159 84 3 6 152 5 159 7.63e-29 106
MsaG019538 MtrunA17_Chr2g0317481 37.107 159 84 3 6 152 5 159 8.58e-29 106
MsaG019538 MtrunA17_Chr8g0376821 43.443 122 66 2 9 127 1 122 1.69e-28 104
MsaG019538 MtrunA17_Chr2g0300441 41.772 158 78 3 6 152 5 159 1.71e-28 105
MsaG019538 MtrunA17_Chr1g0206691 40.714 140 69 3 23 151 5 141 1.80e-27 102
MsaG019538 MtrunA17_Chr1g0169761 38.776 147 80 3 9 152 1 140 2.78e-27 100
MsaG019538 MtrunA17_Chr8g0356071 39.695 131 72 3 9 133 1 130 9.88e-27 99.0
MsaG019538 MtrunA17_Chr8g0345001 36.364 165 94 3 2 159 14 174 2.03e-26 99.0
MsaG019538 MtrunA17_Chr1g0175601 38.776 147 80 3 9 152 1 140 2.67e-26 98.6
MsaG019538 MtrunA17_Chr2g0300421 46.154 117 53 2 6 115 5 118 3.39e-26 98.2
MsaG019538 MtrunA17_Chr4g0074101 43.000 100 55 1 9 106 1 100 8.14e-25 95.1
MsaG019538 MtrunA17_Chr8g0357771 40.678 118 67 2 9 123 1 118 9.23e-25 94.7
MsaG019538 MtrunA17_Chr4g0052061 37.748 151 77 3 9 155 1 138 2.29e-24 92.8
MsaG019538 MtrunA17_Chr1g0175611 40.708 113 65 1 9 119 1 113 3.29e-24 92.8
MsaG019538 MtrunA17_Chr1g0180591 36.054 147 84 3 9 152 1 140 3.98e-24 92.8
MsaG019538 MtrunA17_Chr3g0089151 53.488 86 33 1 6 84 5 90 1.19e-23 90.5
MsaG019538 MtrunA17_Chr4g0052081 48.148 81 42 0 9 89 1 81 7.06e-23 89.7
MsaG019538 MtrunA17_Chr3g0111841 63.793 58 21 0 16 73 2 59 2.18e-22 85.1
MsaG019538 MtrunA17_Chr1g0187351 61.667 60 23 0 23 82 5 64 2.96e-22 85.1
MsaG019538 MtrunA17_Chr7g0238991 39.860 143 72 4 26 157 37 176 1.25e-20 85.5
MsaG019538 MtrunA17_Chr3g0111831 53.030 66 31 0 17 82 11 76 3.72e-20 80.1
MsaG019538 MtrunA17_Chr5g0427401 52.174 69 33 0 9 77 1 69 2.68e-19 81.3
MsaG019538 MtrunA17_Chr2g0284911 34.028 144 86 2 1 144 8 142 2.74e-19 82.0
MsaG019538 MtrunA17_Chr3g0077501 32.609 138 80 2 9 144 1 127 4.36e-19 80.9
MsaG019538 MtrunA17_Chr1g0173161 54.545 66 30 0 9 74 1 66 7.04e-19 76.6
MsaG019538 MtrunA17_Chr4g0020221 36.424 151 85 4 9 157 1 142 8.09e-19 80.9
MsaG019538 MtrunA17_Chr4g0061671 35.714 140 72 4 9 144 1 126 1.28e-18 78.6
MsaG019538 MtrunA17_Chr4g0049901 54.286 70 29 1 11 77 29 98 1.79e-18 79.3
MsaG019538 MtrunA17_Chr8g0380021 31.034 174 106 4 2 171 10 173 4.10e-18 78.6
MsaG019538 MtrunA17_Chr3g0097101 33.333 138 79 4 6 141 13 139 4.36e-18 78.6
MsaG019538 MtrunA17_Chr8g0351041 36.296 135 72 3 13 144 5 128 4.82e-18 76.6
MsaG019538 MtrunA17_Chr3g0134451 54.167 72 32 1 9 79 1 72 4.89e-18 79.3
MsaG019538 MtrunA17_Chr3g0093131 32.609 138 84 2 27 155 36 173 6.95e-18 77.0
MsaG019538 MtrunA17_Chr6g0474371 35.036 137 80 4 9 144 1 129 9.13e-18 76.6
MsaG019538 MtrunA17_Chr5g0420081 32.484 157 90 5 9 159 1 147 9.75e-18 77.4
MsaG019538 MtrunA17_Chr5g0420091 33.735 166 78 7 9 160 1 148 1.05e-17 77.0
MsaG019538 MtrunA17_Chr3g0111931 56.897 58 25 0 23 80 3 60 1.09e-17 74.3
MsaG019538 MtrunA17_Chr4g0061691 30.769 156 94 4 9 159 1 147 1.23e-17 77.0
MsaG019538 MtrunA17_Chr8g0366231 34.969 163 78 7 9 159 1 147 1.34e-17 77.0
MsaG019538 MtrunA17_Chr2g0279821 46.377 69 37 0 9 77 1 69 1.67e-17 77.0
MsaG019538 MtrunA17_Chr5g0427921 54.386 57 26 0 9 65 1 57 2.07e-17 72.0
MsaG019538 MtrunA17_Chr4g0057151 42.056 107 60 1 13 117 5 111 3.45e-17 75.5
MsaG019538 MtrunA17_Chr5g0411691 46.377 69 37 0 9 77 1 69 3.57e-17 75.9
MsaG019538 MtrunA17_Chr8g0351031 37.162 148 82 5 13 155 5 146 4.31e-17 75.5
MsaG019538 MtrunA17_Chr3g0142191 50.704 71 33 1 9 77 1 71 4.53e-17 75.5
MsaG019538 MtrunA17_Chr1g0159661 49.231 65 33 0 9 73 1 65 6.58e-17 73.9
MsaG019538 MtrunA17_Chr5g0412461 57.895 57 24 0 9 65 1 57 9.57e-17 74.7
MsaG019538 MtrunA17_Chr1g0204111 30.539 167 108 4 2 168 10 168 9.73e-17 75.1
MsaG019538 MtrunA17_Chr4g0049541 43.478 69 39 0 9 77 1 69 1.07e-16 74.3
MsaG019538 MtrunA17_Chr3g0125241 49.231 65 33 0 9 73 26 90 1.16e-16 73.9
MsaG019538 MtrunA17_Chr5g0412271 57.895 57 24 0 9 65 1 57 1.16e-16 74.3
MsaG019538 MtrunA17_Chr5g0425191 50.000 72 34 1 9 78 1 72 1.22e-16 71.2
MsaG019538 MtrunA17_Chr8g0351051 56.897 58 25 0 9 66 1 58 1.23e-16 74.7
MsaG019538 MtrunA17_Chr7g0220121 31.875 160 85 5 9 159 1 145 1.49e-16 74.7
MsaG019538 MtrunA17_Chr7g0246431 34.307 137 71 3 13 144 5 127 2.58e-16 73.2
MsaG019538 MtrunA17_Chr7g0246381 56.604 53 23 0 9 61 1 53 2.93e-16 69.3
MsaG019538 MtrunA17_Chr5g0404951 34.783 138 78 3 9 144 1 128 3.61e-16 73.2
MsaG019538 MtrunA17_Chr8g0377561 48.000 75 36 1 9 80 1 75 3.91e-16 70.1
MsaG019538 MtrunA17_Chr4g0044071 56.604 53 23 0 9 61 1 53 4.32e-16 70.1
MsaG019538 MtrunA17_Chr2g0308251 56.364 55 24 0 9 63 1 55 1.15e-15 68.6
MsaG019538 MtrunA17_Chr1g0164791 30.818 159 94 5 9 159 1 151 1.43e-15 71.6
MsaG019538 MtrunA17_Chr4g0025531 30.534 131 86 3 27 155 26 153 1.79e-15 71.2
MsaG019538 MtrunA17_Chr7g0220111 54.386 57 26 0 9 65 1 57 1.84e-15 71.6
MsaG019538 MtrunA17_Chr3g0122251 56.140 57 25 0 9 65 1 57 3.63e-15 70.9
MsaG019538 MtrunA17_Chr6g0455511 54.386 57 26 0 9 65 1 57 4.63e-15 70.5
MsaG019538 MtrunA17_Chr2g0302091 32.317 164 89 6 1 155 33 183 1.06e-13 66.2
MsaG019538 MtrunA17_Chr4g0060841 50.000 54 27 0 9 62 1 54 1.54e-13 67.4
MsaG019538 MtrunA17_Chr5g0417661 43.333 60 33 1 9 67 56 115 2.32e-13 63.5
MsaG019538 MtrunA17_Chr4g0018421 50.980 51 25 0 13 63 5 55 8.64e-13 63.5
MsaG019538 MtrunA17_Chr1g0166611 65.116 43 15 0 24 66 20 62 1.55e-12 61.6
MsaG019538 MtrunA17_Chr1g0212151 29.167 144 86 3 9 144 1 136 2.48e-11 60.8
MsaG019538 MtrunA17_Chr6g0457851 26.389 144 90 4 9 144 11 146 9.30e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG019538 AT5G60440.1 41.772 158 81 3 6 152 3 160 2.77e-33 120
MsaG019538 AT2G24840.1 38.312 154 86 2 8 152 61 214 6.94e-33 118
MsaG019538 AT1G65360.1 35.849 159 95 2 6 157 3 161 4.14e-26 99.8
MsaG019538 AT2G34440.1 35.862 145 81 4 9 144 1 142 1.23e-24 94.4
MsaG019538 AT1G01530.1 49.398 83 42 0 6 88 3 85 2.95e-24 95.1
MsaG019538 AT4G36590.1 35.000 160 90 3 10 155 7 166 3.00e-23 92.8
MsaG019538 AT3G66656.1 48.454 97 49 1 9 105 1 96 3.97e-23 90.5
MsaG019538 AT2G45660.2 39.394 132 71 2 13 144 5 127 8.28e-22 86.7
MsaG019538 AT3G04100.1 34.254 181 96 6 4 169 8 180 8.92e-22 87.8
MsaG019538 AT4G09960.2 38.406 138 72 5 9 144 1 127 9.07e-22 88.2
MsaG019538 AT4G09960.1 38.406 138 72 5 9 144 1 127 1.08e-21 88.2
MsaG019538 AT4G09960.6 38.406 138 72 5 9 144 2 128 1.10e-21 88.2
MsaG019538 AT4G09960.5 38.406 138 72 5 9 144 11 137 1.38e-21 88.2
MsaG019538 AT1G28460.1 36.686 169 94 5 6 162 4 171 1.48e-21 86.7
MsaG019538 AT4G09960.3 38.406 138 72 5 9 144 27 153 2.10e-21 87.8
MsaG019538 AT2G45660.1 39.394 132 71 2 13 144 5 127 2.82e-21 86.7
MsaG019538 AT4G22950.2 38.346 133 70 2 13 144 5 126 3.67e-21 85.5
MsaG019538 AT4G22950.3 38.346 133 70 2 13 144 5 126 1.63e-20 84.7
MsaG019538 AT4G22950.1 38.346 133 70 2 13 144 5 126 1.63e-20 84.7
MsaG019538 AT4G09960.4 38.406 138 72 5 9 144 96 222 2.52e-20 86.3
MsaG019538 AT1G72350.1 32.877 146 73 2 10 155 43 163 3.04e-20 84.3
MsaG019538 AT5G51870.5 35.915 142 77 2 6 144 21 151 1.15e-19 82.0
MsaG019538 AT1G77980.1 54.167 72 32 1 9 79 1 72 1.18e-19 84.3
MsaG019538 AT5G51870.2 37.037 135 71 2 13 144 5 128 2.31e-19 80.9
MsaG019538 AT1G29962.1 35.057 174 97 5 4 162 2 174 3.07e-19 80.9
MsaG019538 AT3G30260.1 31.210 157 94 4 9 160 1 148 4.50e-19 81.6
MsaG019538 AT5G10140.2 39.130 138 69 5 9 145 1 124 4.64e-19 79.7
MsaG019538 AT1G22130.1 52.778 72 33 1 9 79 1 72 5.19e-19 82.8
MsaG019538 AT1G77950.3 35.714 168 92 6 9 165 1 163 5.40e-19 81.6
MsaG019538 AT1G77950.2 35.714 168 92 6 9 165 1 163 5.40e-19 81.6
MsaG019538 AT1G77950.1 35.714 168 92 6 9 165 1 163 5.40e-19 81.6
MsaG019538 AT1G77950.4 35.714 168 92 6 9 165 1 163 5.40e-19 81.6
MsaG019538 AT1G28450.1 33.140 172 99 5 6 162 4 174 5.45e-19 80.1
MsaG019538 AT5G51870.1 37.037 135 71 2 13 144 5 128 5.52e-19 80.5
MsaG019538 AT4G24540.1 53.623 69 32 0 9 77 1 69 6.08e-19 80.9
MsaG019538 AT5G51870.3 37.037 135 71 2 13 144 15 138 7.60e-19 80.5
MsaG019538 AT5G51870.4 36.691 139 74 2 13 148 5 132 7.76e-19 80.5
MsaG019538 AT2G22540.3 63.158 57 21 0 9 65 1 57 8.59e-19 80.9
MsaG019538 AT2G22540.1 63.158 57 21 0 9 65 1 57 8.59e-19 80.9
MsaG019538 AT5G13790.1 54.930 71 32 0 9 79 1 71 1.16e-18 80.9
MsaG019538 AT5G10140.4 39.130 138 69 5 9 145 1 124 1.18e-18 79.0
MsaG019538 AT5G13790.2 54.930 71 32 0 9 79 1 71 1.21e-18 80.9
MsaG019538 AT5G23260.4 47.436 78 39 1 4 79 12 89 1.47e-18 80.5
MsaG019538 AT5G10140.1 39.130 138 69 5 9 145 1 124 1.61e-18 79.0
MsaG019538 AT5G23260.1 47.436 78 39 1 4 79 12 89 1.67e-18 80.5
MsaG019538 AT5G60910.1 34.591 159 84 6 9 159 1 147 1.68e-18 80.1
MsaG019538 AT3G57230.2 31.618 136 83 2 9 144 1 126 1.74e-18 77.8
MsaG019538 AT2G22540.2 63.636 55 20 0 9 63 1 55 2.18e-18 79.7
MsaG019538 AT4G11880.2 37.313 134 71 3 13 144 5 127 2.20e-18 78.2
MsaG019538 AT4G11880.3 37.313 134 71 3 13 144 5 127 2.20e-18 78.2
MsaG019538 AT5G10140.3 39.130 138 69 5 9 145 1 124 2.50e-18 78.2
MsaG019538 AT5G51860.2 36.486 148 62 4 13 148 5 132 2.56e-18 78.6
MsaG019538 AT5G51860.1 36.486 148 62 4 13 148 5 132 2.65e-18 79.0
MsaG019538 AT4G11880.4 37.313 134 71 3 13 144 5 127 2.68e-18 79.0
MsaG019538 AT4G11880.1 37.313 134 71 3 13 144 5 127 2.68e-18 79.0
MsaG019538 AT5G62165.6 35.075 134 74 2 13 144 5 127 2.74e-18 77.4
MsaG019538 AT5G62165.9 35.075 134 74 2 13 144 5 127 2.74e-18 77.4
MsaG019538 AT5G62165.7 35.075 134 74 2 13 144 5 127 2.74e-18 77.4
MsaG019538 AT5G62165.8 35.075 134 74 2 13 144 5 127 2.74e-18 77.4
MsaG019538 AT5G62165.13 35.075 134 74 2 13 144 5 127 2.74e-18 77.4
MsaG019538 AT5G62165.17 34.483 145 89 2 13 155 5 145 2.91e-18 77.4
MsaG019538 AT5G62165.12 34.483 145 89 2 13 155 5 145 2.91e-18 77.4
MsaG019538 AT5G62165.11 34.483 145 89 2 13 155 5 145 2.91e-18 77.4
MsaG019538 AT2G42830.1 34.286 140 79 4 7 144 14 142 4.64e-18 79.0
MsaG019538 AT5G62165.14 47.368 76 40 0 13 88 5 80 4.97e-18 75.5
MsaG019538 AT2G42830.2 34.286 140 79 4 7 144 14 142 5.04e-18 79.0
MsaG019538 AT3G54340.1 38.060 134 67 4 13 144 5 124 5.40e-18 78.6
MsaG019538 AT4G37940.1 46.377 69 37 0 9 77 1 69 6.99e-18 78.2
MsaG019538 AT4G37940.4 46.377 69 37 0 9 77 1 69 7.66e-18 77.8
MsaG019538 AT3G57390.3 35.443 158 85 4 9 155 1 152 7.70e-18 77.8
MsaG019538 AT4G37940.3 46.377 69 37 0 9 77 1 69 8.91e-18 76.6
MsaG019538 AT3G57230.1 29.268 164 101 4 9 168 1 153 1.21e-17 77.8
MsaG019538 AT3G57230.4 29.268 164 101 4 9 168 1 153 1.21e-17 77.8
MsaG019538 AT5G62165.10 47.368 76 40 0 13 88 5 80 1.41e-17 76.6
MsaG019538 AT5G62165.4 47.368 76 40 0 13 88 5 80 1.41e-17 76.6
MsaG019538 AT3G57390.1 35.443 158 85 4 9 155 1 152 1.55e-17 77.8
MsaG019538 AT5G62165.3 47.368 76 40 0 13 88 5 80 1.56e-17 76.6
MsaG019538 AT5G62165.1 47.368 76 40 0 13 88 5 80 1.56e-17 76.6
MsaG019538 AT5G62165.2 47.368 76 40 0 13 88 5 80 1.56e-17 76.6
MsaG019538 AT2G22630.1 47.826 69 36 0 9 77 1 69 2.33e-17 76.6
MsaG019538 AT2G22630.2 47.826 69 36 0 9 77 1 69 2.33e-17 76.6
MsaG019538 AT5G23260.2 49.315 73 35 1 9 79 1 73 3.17e-17 76.6
MsaG019538 AT2G45650.1 50.725 69 34 0 9 77 1 69 3.20e-17 76.6
MsaG019538 AT2G03710.3 31.250 160 90 5 9 160 1 148 3.57e-17 75.5
MsaG019538 AT4G18960.1 35.821 134 73 5 10 141 18 140 3.74e-17 76.6
MsaG019538 AT5G23260.3 49.315 73 35 1 9 79 1 73 3.75e-17 76.3
MsaG019538 AT3G58780.2 53.846 65 30 0 2 66 9 73 7.76e-17 75.5
MsaG019538 AT3G58780.1 47.368 76 40 0 2 77 9 84 8.59e-17 75.5
MsaG019538 AT3G58780.5 47.368 76 40 0 2 77 15 90 8.69e-17 75.5
MsaG019538 AT3G58780.3 53.846 65 30 0 2 66 9 73 9.69e-17 75.9
MsaG019538 AT3G58780.4 53.846 65 30 0 2 66 9 73 1.60e-16 75.1
MsaG019538 AT1G69120.2 34.161 161 82 6 9 159 1 147 1.76e-16 74.3
MsaG019538 AT1G69120.1 34.161 161 82 6 9 159 1 147 2.35e-16 74.3
MsaG019538 AT1G26310.1 31.288 163 86 6 9 159 1 149 4.33e-16 73.6
MsaG019538 AT2G03710.2 31.250 160 90 5 9 160 1 148 5.46e-16 73.6
MsaG019538 AT2G03710.1 31.250 160 90 5 9 160 1 148 5.47e-16 73.6
MsaG019538 AT2G14210.1 47.143 70 36 1 9 77 1 70 6.47e-16 72.8
MsaG019538 AT5G65050.2 35.762 151 80 6 9 155 1 138 7.39e-16 71.6
MsaG019538 AT5G20240.2 52.381 63 30 0 9 71 1 63 8.08e-16 70.9
MsaG019538 AT2G14210.2 47.143 70 36 1 9 77 1 70 8.85e-16 72.4
MsaG019538 AT5G20240.1 47.887 71 35 1 9 77 1 71 1.19e-15 71.6
MsaG019538 AT1G47760.1 48.333 60 31 0 9 68 1 60 1.66e-15 70.9
MsaG019538 AT5G65050.3 35.762 151 80 6 9 155 1 138 2.13e-15 70.9
MsaG019538 AT5G65050.1 35.762 151 80 6 9 155 1 138 2.31e-15 70.5
MsaG019538 AT1G24260.1 54.386 57 26 0 9 65 1 57 4.43e-15 70.9
MsaG019538 AT1G24260.2 54.386 57 26 0 9 65 1 57 4.57e-15 70.9
MsaG019538 AT3G02310.2 54.386 57 26 0 9 65 1 57 4.94e-15 70.1
MsaG019538 AT5G15800.1 54.386 57 26 0 9 65 1 57 5.01e-15 70.9
MsaG019538 AT1G24260.3 54.386 57 26 0 9 65 1 57 5.87e-15 70.5
MsaG019538 AT5G65050.5 44.304 79 42 2 9 85 1 79 9.50e-15 68.9
MsaG019538 AT5G15800.2 54.386 57 26 0 9 65 1 57 1.06e-14 70.1
MsaG019538 AT1G71692.1 42.169 83 47 1 9 90 1 83 1.12e-14 69.3
MsaG019538 AT5G65070.4 41.935 62 36 0 9 70 1 62 1.26e-14 67.8
MsaG019538 AT5G65060.1 35.099 151 81 6 9 155 1 138 1.39e-14 68.6
MsaG019538 AT5G65060.3 35.099 151 81 6 9 155 1 138 1.40e-14 68.6
MsaG019538 AT3G61120.1 44.928 69 38 0 9 77 1 69 1.49e-14 69.3
MsaG019538 AT5G65070.3 35.833 120 66 3 9 117 1 120 1.88e-14 68.9
MsaG019538 AT3G02310.1 54.386 57 26 0 9 65 1 57 1.93e-14 69.3
MsaG019538 AT5G65070.1 41.935 62 36 0 9 70 1 62 3.38e-14 67.8
MsaG019538 AT5G65060.2 44.286 70 38 1 9 77 1 70 3.65e-14 67.4
MsaG019538 AT5G65070.2 41.935 62 36 0 9 70 1 62 9.09e-14 67.0
MsaG019538 AT2G26320.1 45.000 60 33 0 6 65 14 73 9.10e-14 64.3
MsaG019538 AT5G65070.5 41.935 62 36 0 9 70 1 62 1.12e-13 66.6
MsaG019538 AT4G37435.1 50.877 57 28 0 9 65 1 57 2.32e-13 65.1
MsaG019538 AT1G18750.4 43.860 57 32 0 9 65 1 57 2.37e-12 64.3
MsaG019538 AT1G18750.3 43.860 57 32 0 9 65 1 57 2.67e-12 64.3
MsaG019538 AT1G18750.1 43.860 57 32 0 9 65 1 57 2.87e-12 63.9
MsaG019538 AT5G65080.3 33.929 112 65 3 4 106 3 114 3.14e-12 62.4
MsaG019538 AT5G65080.2 41.667 60 35 0 4 63 3 62 4.43e-12 62.0
MsaG019538 AT1G31140.1 44.776 67 35 1 16 80 8 74 9.13e-12 61.2
MsaG019538 AT1G31140.2 44.776 67 35 1 16 80 8 74 9.26e-12 61.2
MsaG019538 AT1G17310.1 28.777 139 71 3 23 161 61 171 1.14e-11 61.2
MsaG019538 AT1G17310.2 28.777 139 71 3 23 161 72 182 1.32e-11 61.2
MsaG019538 AT1G69540.1 45.000 60 32 1 9 67 1 60 1.78e-11 61.6
MsaG019538 AT2G03060.2 44.068 59 32 1 9 66 1 59 2.37e-11 61.6
MsaG019538 AT2G03060.3 44.068 59 32 1 9 66 1 59 2.40e-11 61.2
MsaG019538 AT2G03060.7 44.068 59 32 1 9 66 1 59 2.40e-11 61.2
MsaG019538 AT2G03060.1 44.068 59 32 1 9 66 1 59 2.40e-11 61.2
MsaG019538 AT1G69540.2 45.000 60 32 1 9 67 1 60 2.76e-11 61.2
MsaG019538 AT1G46408.1 42.254 71 37 2 12 78 6 76 7.17e-11 59.7

Find 28 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGAGCTTGAACAATTTA+TGG 0.133052 4:-30412388 MsaT019538.1:CDS
GTTAGTCTTTAACTCTTTAA+TGG 0.198145 4:+30412362 None:intergenic
TGCAAAGCATTGGTTCATTA+AGG 0.261008 4:+30412340 None:intergenic
TTAATGAACCAATGCTTTGC+AGG 0.333211 4:-30412338 MsaT019538.1:CDS
TTCTCTATTGTACTCTTCAT+AGG 0.381130 4:+30412518 None:intergenic
TTAGGTTGACCAAAGCAAAA+TGG 0.397509 4:+30412618 None:intergenic
GACCATGGAATTTCTTGATC+TGG 0.399840 4:-30412316 MsaT019538.1:CDS
CAACGAAACCACCGAGTTTG+AGG 0.421716 4:-30412568 MsaT019538.1:CDS
AGCAAAATGGTTTGTCTGAA+GGG 0.440533 4:+30412631 None:intergenic
TTTGAGGATTCGAACTCAAC+AGG 0.443512 4:-30412552 MsaT019538.1:CDS
GGCATTGAAAATGTTGGAGT+TGG 0.446270 4:-30412487 MsaT019538.1:CDS
TGAGAATGTGACTTGTCTGT+TGG 0.451459 4:+30412734 None:intergenic
CGAGGAGGCATTGAAAATGT+TGG 0.513334 4:-30412493 MsaT019538.1:CDS
TCCATGGTCCTGCAAAGCAT+TGG 0.514205 4:+30412330 None:intergenic
AAGCAAAATGGTTTGTCTGA+AGG 0.532266 4:+30412630 None:intergenic
AACAAAAGAAAGAAAAGTGT+AGG 0.550757 4:-30412795 MsaT019538.1:CDS
ATCCAGATCAAGAAATTCCA+TGG 0.575084 4:+30412314 None:intergenic
ACCAATGCTTTGCAGGACCA+TGG 0.576397 4:-30412331 MsaT019538.1:CDS
ACAAAAGAAAGAAAAGTGTA+GGG 0.587235 4:-30412794 MsaT019538.1:CDS
GCAAAATGGTTTGTCTGAAG+GGG 0.601885 4:+30412632 None:intergenic
TGAGTTCGAATCCTCAAACT+CGG 0.632805 4:+30412557 None:intergenic
ATGTGATGCACATGTAGCCA+TGG 0.634027 4:-30412664 MsaT019538.1:CDS
ACATTCTCAAAGAGAAGACA+AGG 0.657201 4:-30412720 MsaT019538.1:CDS
AGAGTACAATAGAGAATACG+AGG 0.676337 4:-30412511 MsaT019538.1:CDS
GTTCGAATCCTCAAACTCGG+TGG 0.681078 4:+30412560 None:intergenic
TGATGCACATGTAGCCATGG+TGG 0.726525 4:-30412661 MsaT019538.1:CDS
TGAAGGGGAAAACACCACCA+TGG 0.731380 4:+30412647 None:intergenic
GTACAATAGAGAATACGAGG+AGG 0.750561 4:-30412508 MsaT019538.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr4 gene 30412308 30412823 30412308 ID=MsaG019538
Chr4 mRNA 30412308 30412823 30412308 ID=MsaT019538.1;Parent=MsaG019538
Chr4 exon 30412308 30412823 30412308 ID=MsaT019538.1.exon1;Parent=MsaT019538.1
Chr4 CDS 30412308 30412823 30412308 ID=cds.MsaT019538.1;Parent=MsaT019538.1
Gene Sequence

>MsaT019538.1

ATGGATAACAAAAGAAAGAAAAGTGTAGGGCACAAGAAGATTGAGATCAAGAAGATTGACAAAGCATCCAACAGACAAGTCACATTCTCAAAGAGAAGACAAGGTCTATTCAAAAAAGCAAGTGAACTTTGTGTCTTATGTGATGCACATGTAGCCATGGTGGTGTTTTCCCCTTCAGACAAACCATTTTGCTTTGGTCAACCTAACGCCGAGACAATTTTTAATAGCTACATCAACGAAACCACCGAGTTTGAGGATTCGAACTCAACAGGTAATTCTTCAACCTATGAAGAGTACAATAGAGAATACGAGGAGGCATTGAAAATGTTGGAGTTGGAGAAGAAGAAACTAGCCAATGTTAAAATTTTGAACAAAAGTGATTGGTGGAATGATTCAATTGATGATATGAGTATTGAAGAGCTTGAACAATTTATGGTGTCCATTAAAGAGTTAAAGACTAACCTTAATGAACCAATGCTTTGCAGGACCATGGAATTTCTTGATCTGGATGAATGA
Protein sequence

>MsaT019538.1

MDNKRKKSVGHKKIEIKKIDKASNRQVTFSKRRQGLFKKASELCVLCDAHVAMVVFSPSDKPFCFGQPNAETIFNSYINETTEFEDSNSTGNSSTYEEYNREYEEALKMLELEKKKLANVKILNKSDWWNDSIDDMSIEELEQFMVSIKELKTNLNEPMLCRTMEFLDLDE*