Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG019587 | XP_013455470.1 | 95.657 | 875 | 33 | 4 | 1 | 875 | 1 | 870 | 0.0 | 1650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG019587 | sp|Q9UMN6|KMT2B_HUMAN | 32.727 | 220 | 122 | 9 | 142 | 354 | 1202 | 1402 | 3.82e-28 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG019587 | tr|A0A072UJ97|A0A072UJ97_MEDTR | 95.657 | 875 | 33 | 4 | 1 | 875 | 1 | 870 | 0.0 | 1650 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG019587 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG019587 | MtrunA17_Chr4g0019381 | 95.657 | 875 | 33 | 4 | 1 | 875 | 1 | 870 | 0.0 | 1650 |
| MsaG019587 | MtrunA17_Chr7g0275611 | 38.571 | 70 | 40 | 1 | 269 | 338 | 339 | 405 | 4.38e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG019587 | AT3G08020.1 | 49.721 | 895 | 314 | 18 | 1 | 875 | 1 | 779 | 0.0 | 776 |
| MsaG019587 | AT3G52100.3 | 60.677 | 384 | 134 | 7 | 1 | 376 | 1 | 375 | 7.50e-157 | 475 |
| MsaG019587 | AT3G52100.3 | 33.252 | 409 | 174 | 13 | 475 | 875 | 361 | 678 | 1.63e-37 | 150 |
| MsaG019587 | AT3G52100.2 | 60.677 | 384 | 134 | 7 | 1 | 376 | 1 | 375 | 1.78e-156 | 474 |
| MsaG019587 | AT3G52100.2 | 30.663 | 362 | 154 | 11 | 475 | 830 | 361 | 631 | 1.14e-25 | 114 |
| MsaG019587 | AT3G52100.1 | 58.690 | 397 | 139 | 8 | 1 | 376 | 1 | 393 | 1.85e-154 | 469 |
| MsaG019587 | AT3G52100.1 | 33.252 | 409 | 174 | 13 | 475 | 875 | 379 | 696 | 2.64e-37 | 150 |
| MsaG019587 | AT3G52100.4 | 65.979 | 291 | 93 | 2 | 86 | 376 | 4 | 288 | 1.41e-134 | 414 |
| MsaG019587 | AT3G52100.4 | 33.252 | 409 | 174 | 13 | 475 | 875 | 274 | 591 | 7.03e-38 | 150 |
Find 197 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATAAGTTGGTTATAAATT+TGG | 0.123019 | 4:+31770983 | MsaT019587.1:CDS |
| AAGCAATAAGGCAAATATTT+TGG | 0.136146 | 4:+31770911 | MsaT019587.1:CDS |
| AACAATGATCTTTCTTTAAA+AGG | 0.142690 | 4:-31772100 | None:intergenic |
| TGAAATTCATAGGTGGTTTC+TGG | 0.153491 | 4:+31767717 | MsaT019587.1:intron |
| CATCTTGGTAGGTGAATTAT+TGG | 0.205189 | 4:-31770574 | None:intergenic |
| TGGCCAGTCAAAACATTTAA+AGG | 0.217949 | 4:+31771664 | MsaT019587.1:CDS |
| AATAAGTTGGTTATAAATTT+GGG | 0.260701 | 4:+31770984 | MsaT019587.1:CDS |
| AAGAAGCATTACCATGTAAT+TGG | 0.262907 | 4:-31764243 | None:intergenic |
| AGCATCACGCTTAGCTTTCA+TGG | 0.266381 | 4:-31764624 | None:intergenic |
| ATCAGACATCCGATGATTCT+TGG | 0.268452 | 4:+31772275 | MsaT019587.1:CDS |
| GATTCCCATCCACTTGAAAT+TGG | 0.272368 | 4:-31770206 | None:intergenic |
| CCTACCAAGATGAATGATTA+TGG | 0.283895 | 4:+31770585 | MsaT019587.1:CDS |
| CCGCTAACAGCAACAATTTC+CGG | 0.284119 | 4:-31764560 | None:intergenic |
| ATTTATTTCATTGGAGTTCA+TGG | 0.288581 | 4:+31765989 | MsaT019587.1:CDS |
| TAACCAGATCTTGATCTCTT+TGG | 0.295044 | 4:-31771058 | None:intergenic |
| TCAAAACATTTAAAGGTTTA+CGG | 0.306095 | 4:+31771671 | MsaT019587.1:CDS |
| TATCAGGACCTTCATTTCTC+TGG | 0.307104 | 4:-31770743 | None:intergenic |
| GATACATCGGGCAATCTTAA+TGG | 0.308661 | 4:+31765730 | MsaT019587.1:CDS |
| AGTGAAGGTTTAGAATCTTT+TGG | 0.315117 | 4:-31771974 | None:intergenic |
| TTTGCAGAACATGAACTTAC+TGG | 0.319396 | 4:-31766938 | None:intergenic |
| CTATCCTCATCGTCAGAATA+TGG | 0.325229 | 4:-31770489 | None:intergenic |
| CTTGTTTCCCTTTGTCAAAT+GGG | 0.326959 | 4:-31771447 | None:intergenic |
| GGCGGCGGTGGCACCACTTT+CGG | 0.327840 | 4:-31764536 | None:intergenic |
| TCAGGAAGTAGGGTTGATTC+TGG | 0.334958 | 4:+31771644 | MsaT019587.1:intron |
| ATTGCCAGTGTGATGATATT+AGG | 0.335400 | 4:+31768332 | MsaT019587.1:CDS |
| AGAATTTGTTTCTGTTCGTT+AGG | 0.339995 | 4:+31764386 | MsaT019587.1:CDS |
| AGGATGCTGTTCAAGAGCTT+TGG | 0.345011 | 4:+31770376 | MsaT019587.1:CDS |
| AAGAGGTGAAAAGACGTATT+TGG | 0.348962 | 4:+31771877 | MsaT019587.1:CDS |
| TGTGTGTTTCGGGCACAAAT+AGG | 0.351103 | 4:-31767104 | None:intergenic |
| TGTTCGAATTAAAAGCAATA+AGG | 0.361567 | 4:+31770899 | MsaT019587.1:CDS |
| ACTTGTTTCCCTTTGTCAAA+TGG | 0.370484 | 4:-31771448 | None:intergenic |
| CAATCTTAATGGAGACGAAC+AGG | 0.376065 | 4:+31765741 | MsaT019587.1:CDS |
| GTGTGTTTCGGGCACAAATA+GGG | 0.377093 | 4:-31767103 | None:intergenic |
| TCAAGGGCCAGAGGTCAAAA+AGG | 0.391669 | 4:+31772065 | MsaT019587.1:CDS |
| GGGTGAAGTTGGTCCTTTAG+AGG | 0.394114 | 4:+31771784 | MsaT019587.1:CDS |
| GAAATTCATAGGTGGTTTCT+GGG | 0.395520 | 4:+31767718 | MsaT019587.1:intron |
| CCGTTATTACCTCACAAATT+CGG | 0.395579 | 4:-31766026 | None:intergenic |
| GGTGATGAATAAATAATATC+AGG | 0.397412 | 4:-31770759 | None:intergenic |
| TTGTCGTGGGGAATGTTATC+AGG | 0.399762 | 4:+31770248 | MsaT019587.1:CDS |
| TATTAGATCTTTACATAGCT+TGG | 0.401339 | 4:+31770707 | MsaT019587.1:CDS |
| ATGATCAACCAAGTTGGATT+AGG | 0.402380 | 4:+31771845 | MsaT019587.1:CDS |
| AAAATCCCTGTCTGATTGAC+AGG | 0.418712 | 4:-31770819 | None:intergenic |
| ATGAGAACATGGATGCAAAC+TGG | 0.421404 | 4:+31772203 | MsaT019587.1:CDS |
| GAAAATATTTCTTCTTGTGT+TGG | 0.421725 | 4:-31770459 | None:intergenic |
| TGACCTCTGGCCCTTGATAG+TGG | 0.426050 | 4:-31772059 | None:intergenic |
| CCGGAAATTGTTGCTGTTAG+CGG | 0.434395 | 4:+31764560 | MsaT019587.1:CDS |
| ATGCTGTTCAAGAGCTTTGG+AGG | 0.441727 | 4:+31770379 | MsaT019587.1:CDS |
| ATTTATTCATCACCTGCTAC+TGG | 0.449750 | 4:+31770768 | MsaT019587.1:CDS |
| ATAGGAGCTGCTTGAAAAGT+TGG | 0.450677 | 4:+31765872 | MsaT019587.1:CDS |
| ATCAGGACCTTCATTTCTCT+GGG | 0.451501 | 4:-31770742 | None:intergenic |
| CTACATGTTACTTACGATGA+TGG | 0.452765 | 4:+31772779 | MsaT019587.1:CDS |
| ATCTTGGTAGGTGAATTATT+GGG | 0.454003 | 4:-31770573 | None:intergenic |
| ATTGTTGCTGTTAGCGGTGG+TGG | 0.455700 | 4:+31764566 | MsaT019587.1:CDS |
| GAATTTGTTTCTGTTCGTTA+GGG | 0.455855 | 4:+31764387 | MsaT019587.1:CDS |
| ACAATTTCCGGCGGCGGCGG+TGG | 0.459269 | 4:-31764548 | None:intergenic |
| GTTAGCGGTGGTGGTGGTGG+TGG | 0.459911 | 4:+31764575 | MsaT019587.1:CDS |
| TATCACCAATTTCAAGTGGA+TGG | 0.460018 | 4:+31770201 | MsaT019587.1:CDS |
| AGGCACAAGGGAGAGGTGAC+TGG | 0.460865 | 4:+31772734 | MsaT019587.1:intron |
| TATGCTAGGAGGCTTGAATC+TGG | 0.462814 | 4:+31764689 | MsaT019587.1:CDS |
| GGTGAAGTTGGTCCTTTAGA+GGG | 0.464502 | 4:+31771785 | MsaT019587.1:CDS |
| TGACTCAAGCTTCCAGTAGC+AGG | 0.469535 | 4:-31770780 | None:intergenic |
| TCTGAATTCAACTTCACCTC+TGG | 0.469813 | 4:+31771740 | MsaT019587.1:CDS |
| CTTTCCATAATCATTCATCT+TGG | 0.470156 | 4:-31770589 | None:intergenic |
| GATACAGACTCTACCTTATG+AGG | 0.470210 | 4:-31767000 | None:intergenic |
| GCTGTTAGCGGTGGTGGTGG+TGG | 0.472919 | 4:+31764572 | MsaT019587.1:CDS |
| AATTCAACCCATTTGACAAA+GGG | 0.483325 | 4:+31771440 | MsaT019587.1:CDS |
| GAGTAGTCAAAATTCTCATC+AGG | 0.485190 | 4:+31772024 | MsaT019587.1:CDS |
| GATCTTTCTTTAAAAGGTGA+AGG | 0.485940 | 4:-31772094 | None:intergenic |
| CTGTCTGCAACCTCCTCATA+AGG | 0.486512 | 4:+31766987 | MsaT019587.1:CDS |
| TGATGGAAAAGTGAGTATCT+TGG | 0.491862 | 4:+31772796 | MsaT019587.1:CDS |
| TATCTTGGAACTCAGGAAGC+AGG | 0.492514 | 4:+31772811 | MsaT019587.1:CDS |
| ACAAATTCGGCAAGCACGGC+AGG | 0.495002 | 4:-31766013 | None:intergenic |
| GATAGACACAATGGAGCAGC+TGG | 0.496318 | 4:+31771479 | MsaT019587.1:CDS |
| ACGTTGCTTGTCCAATTACA+TGG | 0.496718 | 4:+31764232 | MsaT019587.1:CDS |
| ATAATGCAGAATGTTAGTAC+TGG | 0.497183 | 4:+31767079 | MsaT019587.1:intron |
| CGTGATGCTCTTCAGAGAAA+AGG | 0.498878 | 4:+31764638 | MsaT019587.1:CDS |
| AAAAGTTGGTCTAATAATAG+AGG | 0.500565 | 4:+31765886 | MsaT019587.1:CDS |
| CTGGGAATGGACTAAGTGTC+AGG | 0.500974 | 4:+31767155 | MsaT019587.1:CDS |
| GTAAGTAACATGTAGATTTG+AGG | 0.501844 | 4:-31772771 | None:intergenic |
| GGAGCAGCTGGAGATATTGA+TGG | 0.502562 | 4:+31771491 | MsaT019587.1:CDS |
| TCTTGTCCTGTCAATCAGAC+AGG | 0.503014 | 4:+31770813 | MsaT019587.1:CDS |
| GTTGTAGTAAGAAGTACCAT+AGG | 0.505771 | 4:+31765854 | MsaT019587.1:CDS |
| GAAGGTGCAAGTCAATCTCC+TGG | 0.506230 | 4:+31772166 | MsaT019587.1:CDS |
| AAGATTTAATTACCAGCTTG+AGG | 0.507382 | 4:+31770421 | MsaT019587.1:CDS |
| AGAGGAGAAGACCACTATCA+AGG | 0.508228 | 4:+31772048 | MsaT019587.1:CDS |
| TTGCAGAACATGAACTTACT+GGG | 0.510009 | 4:-31766937 | None:intergenic |
| TCATGATTTATATTCTCTCC+AGG | 0.512210 | 4:-31772184 | None:intergenic |
| TGCTGCTATGATTGCTGCTG+AGG | 0.512543 | 4:+31764664 | MsaT019587.1:CDS |
| GCAACAATTTCCGGCGGCGG+CGG | 0.514824 | 4:-31764551 | None:intergenic |
| AGATTTAATTACCAGCTTGA+GGG | 0.515066 | 4:+31770422 | MsaT019587.1:CDS |
| ATCTAGGCTTGCAGAAGGAC+TGG | 0.515563 | 4:+31766910 | MsaT019587.1:intron |
| ACCAGCTTGAGGGCTGCAGC+TGG | 0.516002 | 4:+31770432 | MsaT019587.1:CDS |
| GCTGTGATCATTGCCAACGC+TGG | 0.517113 | 4:+31768305 | MsaT019587.1:CDS |
| GAATCACTCTTTAACTTCAA+AGG | 0.517532 | 4:-31770516 | None:intergenic |
| TTCAACTTCACCTCTGGTAG+AGG | 0.517716 | 4:+31771746 | MsaT019587.1:CDS |
| TTTGTCCAGGCACAAGGGAG+AGG | 0.519232 | 4:+31772727 | MsaT019587.1:intron |
| TTAAAGGTTTACGGAAGAGA+AGG | 0.519410 | 4:+31771680 | MsaT019587.1:CDS |
| CAAGATCTGGTTACTGCCAA+TGG | 0.520282 | 4:+31771068 | MsaT019587.1:CDS |
| AGTGGTGCCACCGCCGCCGC+CGG | 0.520952 | 4:+31764541 | MsaT019587.1:CDS |
| CGGGGAAAACGTAATACTCA+TGG | 0.521412 | 4:+31771821 | MsaT019587.1:CDS |
| CCATAATCATTCATCTTGGT+AGG | 0.524350 | 4:-31770585 | None:intergenic |
| ATGCAATCCCAGAGAAATGA+AGG | 0.526674 | 4:+31770735 | MsaT019587.1:CDS |
| TCGACAAAAGACCTTTACAT+TGG | 0.526937 | 4:-31765770 | None:intergenic |
| AGTTGCGCATCCAATGTCCC+TGG | 0.528835 | 4:+31767136 | MsaT019587.1:CDS |
| GTAGAGGCAATATGTTGGAT+GGG | 0.530094 | 4:+31771762 | MsaT019587.1:CDS |
| TCAAAATTCTCATCAGGAAG+AGG | 0.530679 | 4:+31772030 | MsaT019587.1:CDS |
| GAGGTGACTGGCGTAGTTGA+AGG | 0.532601 | 4:+31772746 | MsaT019587.1:CDS |
| TGGTTATAAATTTGGGAGCA+CGG | 0.533503 | 4:+31770991 | MsaT019587.1:CDS |
| GATTCACGGAAGGGAGAAGA+TGG | 0.535378 | 4:+31764491 | MsaT019587.1:CDS |
| CTTCCAAAGAGATCAAGATC+TGG | 0.538529 | 4:+31771055 | MsaT019587.1:CDS |
| ACAGCAACAATTTCCGGCGG+CGG | 0.541618 | 4:-31764554 | None:intergenic |
| CACTATGTCCTTCAAAACTA+CGG | 0.541662 | 4:-31770683 | None:intergenic |
| AAGTGAGTATCTTGGAACTC+AGG | 0.543351 | 4:+31772804 | MsaT019587.1:CDS |
| GCATCCAATGTCCCTGGGAA+TGG | 0.543385 | 4:+31767142 | MsaT019587.1:CDS |
| GACTCTGTGTCATTCATGAC+GGG | 0.544192 | 4:+31770645 | MsaT019587.1:CDS |
| ACCGGTACCTTCAGACAGAC+AGG | 0.544303 | 4:-31767793 | None:intergenic |
| TTGAATTTAAATCTCAGTGA+AGG | 0.545895 | 4:-31771989 | None:intergenic |
| TAGTCCATTCCCAGGGACAT+TGG | 0.546556 | 4:-31767146 | None:intergenic |
| GGTAGAGGCAATATGTTGGA+TGG | 0.546772 | 4:+31771761 | MsaT019587.1:CDS |
| TCAAGTTGCGGTGCCGAAAG+TGG | 0.549626 | 4:+31764523 | MsaT019587.1:CDS |
| GCTGGAGATATTGATGGTAA+AGG | 0.550993 | 4:+31771497 | MsaT019587.1:CDS |
| ACCAGCTGCAGCCCTCAAGC+TGG | 0.551122 | 4:-31770433 | None:intergenic |
| TGATGGTCAGTGATGAAGAA+AGG | 0.551814 | 4:+31770865 | MsaT019587.1:CDS |
| ATCACCAATTTCAAGTGGAT+GGG | 0.551981 | 4:+31770202 | MsaT019587.1:CDS |
| ATGATGTGAGATCCCTCTAA+AGG | 0.552018 | 4:-31771797 | None:intergenic |
| CATGGAATGATCAACCAAGT+TGG | 0.552171 | 4:+31771839 | MsaT019587.1:CDS |
| AAATTGGGAAGTGATGCAAT+TGG | 0.556017 | 4:+31772235 | MsaT019587.1:CDS |
| CTGTGATCATTGCCAACGCT+GGG | 0.558570 | 4:+31768306 | MsaT019587.1:CDS |
| GTGGAAGATTGTTTGTGAAA+GGG | 0.560028 | 4:+31767761 | MsaT019587.1:CDS |
| CTCTGGTAGAGGCAATATGT+TGG | 0.560045 | 4:+31771757 | MsaT019587.1:CDS |
| TGTGGAAGATTGTTTGTGAA+AGG | 0.560702 | 4:+31767760 | MsaT019587.1:CDS |
| CCTCACAAATTCGGCAAGCA+CGG | 0.563825 | 4:-31766017 | None:intergenic |
| AATGTGAAGACATGTGATTA+TGG | 0.564014 | 4:-31771946 | None:intergenic |
| CGAAACGAAGAACGCGACGA+AGG | 0.567316 | 4:+31764427 | MsaT019587.1:CDS |
| GAGGAGAAGACCACTATCAA+GGG | 0.567556 | 4:+31772049 | MsaT019587.1:CDS |
| GCTTGAATCTGGCGATGTTG+TGG | 0.569400 | 4:+31764700 | MsaT019587.1:CDS |
| AGAGGGATCTCACATCATGC+GGG | 0.569444 | 4:+31771802 | MsaT019587.1:CDS |
| ACGTTGCACCTAATCCAACT+TGG | 0.570960 | 4:-31771853 | None:intergenic |
| ATTCTGACGATGAGGATAGC+GGG | 0.573927 | 4:+31770493 | MsaT019587.1:CDS |
| GGATTAGGTGCAACGTCAAG+AGG | 0.575651 | 4:+31771860 | MsaT019587.1:CDS |
| TATACATGTCCTACTTGTCG+TGG | 0.579175 | 4:+31770234 | MsaT019587.1:CDS |
| ACAGGGGCAATCCAATGTAA+AGG | 0.579424 | 4:+31765759 | MsaT019587.1:CDS |
| AAATTCAACCCATTTGACAA+AGG | 0.582014 | 4:+31771439 | MsaT019587.1:CDS |
| AAGATATCACCAATTTCAAG+TGG | 0.584262 | 4:+31770197 | MsaT019587.1:CDS |
| GTTGCTGTTAGCGGTGGTGG+TGG | 0.584403 | 4:+31764569 | MsaT019587.1:CDS |
| ACTGGCAATGTACCCAGCGT+TGG | 0.587950 | 4:-31768318 | None:intergenic |
| ATCTTGGAACTCAGGAAGCA+GGG | 0.589506 | 4:+31772812 | MsaT019587.1:CDS |
| TTTCTCGGTGATTCACGGAA+GGG | 0.589788 | 4:+31764482 | MsaT019587.1:CDS |
| TGGTGGAACGATTCAAGTTG+CGG | 0.592724 | 4:+31764511 | MsaT019587.1:CDS |
| ATACATGTCCTACTTGTCGT+GGG | 0.593049 | 4:+31770235 | MsaT019587.1:CDS |
| CTGACACTTAGTCCATTCCC+AGG | 0.595072 | 4:-31767154 | None:intergenic |
| TAGAGGCAATATGTTGGATG+GGG | 0.598934 | 4:+31771763 | MsaT019587.1:CDS |
| GGACTCTGTGTCATTCATGA+CGG | 0.600709 | 4:+31770644 | MsaT019587.1:CDS |
| TAATGCAGAATGTTAGTACT+GGG | 0.600736 | 4:+31767080 | MsaT019587.1:intron |
| GAATATAAATCATGAGAACA+TGG | 0.604777 | 4:+31772192 | MsaT019587.1:CDS |
| GCTTCATCTAGGCTTGCAGA+AGG | 0.606594 | 4:+31766905 | MsaT019587.1:intron |
| GTTGCGCATCCAATGTCCCT+GGG | 0.607039 | 4:+31767137 | MsaT019587.1:CDS |
| CAAGTTTGTTGATGAGGTGA+TGG | 0.607361 | 4:+31770848 | MsaT019587.1:CDS |
| CAATGATCACAGCAAACCAT+CGG | 0.607867 | 4:-31768295 | None:intergenic |
| TTACTGTCCTGTCTGTCTGA+AGG | 0.612168 | 4:+31767786 | MsaT019587.1:CDS |
| AGGCACTAACCAAGAATCAT+CGG | 0.613042 | 4:-31772284 | None:intergenic |
| AATCTTAATGGAGACGAACA+GGG | 0.615659 | 4:+31765742 | MsaT019587.1:CDS |
| TCACGGAAGGGAGAAGATGG+TGG | 0.616640 | 4:+31764494 | MsaT019587.1:CDS |
| CTTCCAGGTCAAGAATCTTG+AGG | 0.616861 | 4:+31770356 | MsaT019587.1:intron |
| GAAATTGTTGCTGTTAGCGG+TGG | 0.617826 | 4:+31764563 | MsaT019587.1:CDS |
| AGTGAAGAGAGTGGAAAACG+TGG | 0.619742 | 4:+31770936 | MsaT019587.1:CDS |
| TAGAGGGATCTCACATCATG+CGG | 0.619845 | 4:+31771801 | MsaT019587.1:CDS |
| TGCAATCGTGTCGAGAACGA+AGG | 0.621522 | 4:+31765796 | MsaT019587.1:CDS |
| ATGTTCTGCAAAAGATGTGA+TGG | 0.623740 | 4:+31766949 | MsaT019587.1:CDS |
| TTGCTGCTGAGGAGTATGCT+AGG | 0.624374 | 4:+31764675 | MsaT019587.1:CDS |
| GAAACGCAAGTTTGTTGATG+AGG | 0.630617 | 4:+31770842 | MsaT019587.1:CDS |
| TAACATTCCCCACGACAAGT+AGG | 0.631142 | 4:-31770243 | None:intergenic |
| AGATTCAGAGTCAACACCGA+TGG | 0.632016 | 4:+31768279 | MsaT019587.1:CDS |
| TATTCTGACGATGAGGATAG+CGG | 0.633802 | 4:+31770492 | MsaT019587.1:CDS |
| CTTGTCCTGTCAATCAGACA+GGG | 0.634402 | 4:+31770814 | MsaT019587.1:CDS |
| CCGTGCTTGCCGAATTTGTG+AGG | 0.635864 | 4:+31766017 | MsaT019587.1:CDS |
| TTCACCATATTCTGACGATG+AGG | 0.636007 | 4:+31770485 | MsaT019587.1:CDS |
| TATTTGGCGAAGCAGTCAGA+AGG | 0.638353 | 4:+31771893 | MsaT019587.1:CDS |
| TTTGCATTAGATAGACACAA+TGG | 0.643861 | 4:+31771470 | MsaT019587.1:CDS |
| TCATTGTTTAATGACTCTGA+AGG | 0.648459 | 4:+31772115 | MsaT019587.1:CDS |
| CAACATATTGCCTCTACCAG+AGG | 0.652907 | 4:-31771756 | None:intergenic |
| GAGGTTGCAGACAGTAACAA+TGG | 0.654117 | 4:-31766978 | None:intergenic |
| TTCGTTTCGTTCAGAGAACG+CGG | 0.654302 | 4:-31764413 | None:intergenic |
| ATCTTAATGGAGACGAACAG+GGG | 0.656304 | 4:+31765743 | MsaT019587.1:CDS |
| TGACACTTAGTCCATTCCCA+GGG | 0.656715 | 4:-31767153 | None:intergenic |
| AGAGGCAATATGTTGGATGG+GGG | 0.663800 | 4:+31771764 | MsaT019587.1:CDS |
| CTAACCTAATATCATCACAC+TGG | 0.667427 | 4:-31768336 | None:intergenic |
| TCATTGATTAATGACTCTGA+AGG | 0.668914 | 4:+31772148 | MsaT019587.1:CDS |
| TACACGTGCTGTGATGCATG+TGG | 0.671444 | 4:+31767742 | MsaT019587.1:CDS |
| GAGGGATCTCACATCATGCG+GGG | 0.683546 | 4:+31771803 | MsaT019587.1:CDS |
| AAGTTGAATTCAGAAACACT+TGG | 0.688131 | 4:-31771731 | None:intergenic |
| CTGCTGAGGAGTATGCTAGG+AGG | 0.692798 | 4:+31764678 | MsaT019587.1:CDS |
| ACAGACTCTACCTTATGAGG+AGG | 0.696642 | 4:-31766997 | None:intergenic |
| AAGCTTGCATTATCAGACAG+CGG | 0.699554 | 4:-31771035 | None:intergenic |
| TACATGTCCTACTTGTCGTG+GGG | 0.701115 | 4:+31770236 | MsaT019587.1:CDS |
| AGACCACTATCAAGGGCCAG+AGG | 0.706908 | 4:+31772056 | MsaT019587.1:CDS |
| CTAACAGCAACAATTTCCGG+CGG | 0.727273 | 4:-31764557 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 31764222 | 31772877 | 31764222 | ID=MsaG019587 |
| Chr4 | mRNA | 31764222 | 31772877 | 31764222 | ID=MsaT019587.1;Parent=MsaG019587 |
| Chr4 | exon | 31764222 | 31764253 | 31764222 | ID=MsaT019587.1.exon1;Parent=MsaT019587.1 |
| Chr4 | CDS | 31764222 | 31764253 | 31764222 | ID=cds.MsaT019587.1;Parent=MsaT019587.1 |
| Chr4 | exon | 31764382 | 31764721 | 31764382 | ID=MsaT019587.1.exon2;Parent=MsaT019587.1 |
| Chr4 | CDS | 31764382 | 31764721 | 31764382 | ID=cds.MsaT019587.1;Parent=MsaT019587.1 |
| Chr4 | exon | 31765730 | 31765907 | 31765730 | ID=MsaT019587.1.exon3;Parent=MsaT019587.1 |
| Chr4 | CDS | 31765730 | 31765907 | 31765730 | ID=cds.MsaT019587.1;Parent=MsaT019587.1 |
| Chr4 | exon | 31765989 | 31766038 | 31765989 | ID=MsaT019587.1.exon4;Parent=MsaT019587.1 |
| Chr4 | CDS | 31765989 | 31766038 | 31765989 | ID=cds.MsaT019587.1;Parent=MsaT019587.1 |
| Chr4 | exon | 31766916 | 31767008 | 31766916 | ID=MsaT019587.1.exon5;Parent=MsaT019587.1 |
| Chr4 | CDS | 31766916 | 31767008 | 31766916 | ID=cds.MsaT019587.1;Parent=MsaT019587.1 |
| Chr4 | exon | 31767088 | 31767176 | 31767088 | ID=MsaT019587.1.exon6;Parent=MsaT019587.1 |
| Chr4 | CDS | 31767088 | 31767176 | 31767088 | ID=cds.MsaT019587.1;Parent=MsaT019587.1 |
| Chr4 | exon | 31767729 | 31767807 | 31767729 | ID=MsaT019587.1.exon7;Parent=MsaT019587.1 |
| Chr4 | CDS | 31767729 | 31767807 | 31767729 | ID=cds.MsaT019587.1;Parent=MsaT019587.1 |
| Chr4 | exon | 31768271 | 31768353 | 31768271 | ID=MsaT019587.1.exon8;Parent=MsaT019587.1 |
| Chr4 | CDS | 31768271 | 31768353 | 31768271 | ID=cds.MsaT019587.1;Parent=MsaT019587.1 |
| Chr4 | exon | 31770191 | 31770269 | 31770191 | ID=MsaT019587.1.exon9;Parent=MsaT019587.1 |
| Chr4 | CDS | 31770191 | 31770269 | 31770191 | ID=cds.MsaT019587.1;Parent=MsaT019587.1 |
| Chr4 | exon | 31770363 | 31771089 | 31770363 | ID=MsaT019587.1.exon10;Parent=MsaT019587.1 |
| Chr4 | CDS | 31770363 | 31771089 | 31770363 | ID=cds.MsaT019587.1;Parent=MsaT019587.1 |
| Chr4 | exon | 31771432 | 31771518 | 31771432 | ID=MsaT019587.1.exon11;Parent=MsaT019587.1 |
| Chr4 | CDS | 31771432 | 31771518 | 31771432 | ID=cds.MsaT019587.1;Parent=MsaT019587.1 |
| Chr4 | exon | 31771648 | 31772296 | 31771648 | ID=MsaT019587.1.exon12;Parent=MsaT019587.1 |
| Chr4 | CDS | 31771648 | 31772296 | 31771648 | ID=cds.MsaT019587.1;Parent=MsaT019587.1 |
| Chr4 | exon | 31772736 | 31772877 | 31772736 | ID=MsaT019587.1.exon13;Parent=MsaT019587.1 |
| Chr4 | CDS | 31772736 | 31772877 | 31772736 | ID=cds.MsaT019587.1;Parent=MsaT019587.1 |
| Gene Sequence |
| Protein sequence |