AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG019592


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG019592 MtrunA17_Chr4g0019481 82.906 117 19 1 1 116 1 117 2.45e-60 180
MsaG019592 MtrunA17_Chr4g0019471 74.046 131 19 2 1 116 1 131 8.49e-56 169
MsaG019592 MtrunA17_Chr4g0019551 76.923 117 26 1 1 116 1 117 1.11e-46 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 17 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGTTCAGGCTGGTTATT+TGG 0.175696 4:-31927810 None:intergenic
TCTCATTCATCTGGTGTATA+AGG 0.203991 4:-31928011 None:intergenic
CTAGATTCTAATATATAATC+TGG 0.344499 4:-31927771 None:intergenic
CTCATTCATCTGGTGTATAA+GGG 0.375685 4:-31928010 None:intergenic
TCAGGCTGGTTATTTGGTGG+TGG 0.452210 4:-31927804 None:intergenic
TTGAGGTCGAAAGCTTGAAC+AGG 0.493044 4:-31927984 None:intergenic
GGAGGCTGGTTCAAGTCAAA+TGG 0.506887 4:-31927963 None:intergenic
GGTTCAGGCTGGTTATTTGG+TGG 0.509510 4:-31927807 None:intergenic
CGAAAGCTTGAACAGGAGGC+TGG 0.520977 4:-31927977 None:intergenic
AAGTCAAATGGTTGCACATG+TGG 0.522527 4:-31927951 None:intergenic
AATGGTTGCACATGTGGAGG+TGG 0.555990 4:-31927945 None:intergenic
ACTGCTAAAGCTTCTCGAGA+TGG 0.596385 4:-31927726 None:intergenic
CTGGTGTATAAGGGAGATTG+AGG 0.611261 4:-31928001 None:intergenic
AGCCTGAACCAGAAAATGCT+CGG 0.612296 4:+31927820 MsaT019592.1:CDS
AGGTCGAAAGCTTGAACAGG+AGG 0.614849 4:-31927981 None:intergenic
ATATTAGAATCTAGTAAACA+AGG 0.648272 4:+31927780 MsaT019592.1:CDS
TCAAATGGTTGCACATGTGG+AGG 0.671560 4:-31927948 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr4 gene 31927681 31928031 31927681 ID=MsaG019592
Chr4 mRNA 31927681 31928031 31927681 ID=MsaT019592.1;Parent=MsaG019592
Chr4 exon 31927681 31928031 31927681 ID=MsaT019592.1.exon1;Parent=MsaT019592.1
Chr4 CDS 31927681 31928031 31927681 ID=cds.MsaT019592.1;Parent=MsaT019592.1
Gene Sequence

>MsaT019592.1

ATGTCAAAGCTAGAATTCTTATGCAGTGAATGTGACACAATGTTTCCATCTCGAGAAGCTTTAGCAGTGCATGTTATCGAAGAACATCATCCAGATTATATATTAGAATCTAGTAAACAAGGTCCACCACCAAATAACCAGCCTGAACCAGAAAATGCTCGGCCTCAACCACAAAATGTTGAACATCAACCACAAAATGCACCAGCTCCACCACAAAATGTTGAACATCAACCACAAAATGCTCCAGCTCCACCACAAAATGCACCACCTCCACATGTGCAACCATTTGACTTGAACCAGCCTCCTGTTCAAGCTTTCGACCTCAATCTCCCTTATACACCAGATGAATGA

Protein sequence

>MsaT019592.1

MSKLEFLCSECDTMFPSREALAVHVIEEHHPDYILESSKQGPPPNNQPEPENARPQPQNVEHQPQNAPAPPQNVEHQPQNAPAPPQNAPPPHVQPFDLNQPPVQAFDLNLPYTPDE*