AlfalfaGEDB | MsaG019597

M. sativa ssp. caerulea / MsaG019597

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019597	AES87959.1	73.504	117	17	2	1	103	1	117	1.05e-44	150

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019597	tr\|G7JTJ2\|G7JTJ2_MEDTR	73.504	117	17	2	1	103	1	117	5.02e-45	150

TFs/TRs:

Gene ID	Type	Classification
MsaG019597	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000135	MsaG019597	0.834075	6.715103e-56	2.187864e-53
MsaG001551	MsaG019597	0.820640	1.081538e-52	2.419231e-50
MsaG001939	MsaG019597	0.807883	6.917159e-50	1.122532e-47
MsaG002489	MsaG019597	0.824027	1.783636e-53	4.369323e-51
MsaG003329	MsaG019597	0.802501	9.147384e-49	1.308958e-46
MsaG003422	MsaG019597	0.843773	2.129612e-58	9.373920e-56
MsaG003470	MsaG019597	0.833465	9.527122e-56	3.048929e-53
MsaG003861	MsaG019597	0.806467	1.374708e-49	2.157218e-47
MsaG004070	MsaG019597	0.804027	4.433943e-49	6.572485e-47
MsaG004887	MsaG019597	0.805377	2.324739e-49	3.555446e-47
MsaG005410	MsaG019597	0.807617	7.871875e-50	1.269293e-47
MsaG005496	MsaG019597	0.808799	4.419958e-50	7.332587e-48
MsaG005497	MsaG019597	0.801434	1.512220e-48	2.111924e-46
MsaG006555	MsaG019597	0.819663	1.805292e-52	3.934991e-50
MsaG007091	MsaG019597	0.811100	1.420528e-50	2.491881e-48
MsaG007442	MsaG019597	0.833882	7.502171e-56	2.430278e-53
MsaG008234	MsaG019597	0.843002	3.412278e-58	1.465345e-55
MsaG012723	MsaG019597	0.845721	6.392796e-59	3.000064e-56
MsaG014815	MsaG019597	0.809993	2.456888e-50	4.194999e-48
MsaG016209	MsaG019597	0.822351	4.370746e-53	1.023234e-50
MsaG016215	MsaG019597	0.800567	2.269671e-48	3.108298e-46
MsaG016273	MsaG019597	0.824381	1.474093e-53	3.646069e-51
MsaG016397	MsaG019597	0.811637	1.087682e-50	1.933244e-48
MsaG016695	MsaG019597	0.801609	1.392394e-48	1.952340e-46
MsaG016772	MsaG019597	0.803688	5.212206e-49	7.665207e-47
MsaG017009	MsaG019597	0.815627	1.453936e-51	2.855577e-49
MsaG017051	MsaG019597	0.832839	1.361543e-55	4.277587e-53
MsaG017495	MsaG019597	0.824829	1.157487e-53	2.898107e-51
MsaG017644	MsaG019597	0.857559	2.928331e-62	2.077201e-59
MsaG017699	MsaG019597	0.801603	1.396213e-48	1.957439e-46
MsaG017983	MsaG019597	0.805399	2.299835e-49	3.519151e-47
MsaG018286	MsaG019597	0.808314	5.604398e-50	9.189418e-48
MsaG019237	MsaG019597	0.828628	1.448212e-54	4.030837e-52
MsaG019597	MsaG019649	0.865455	1.166839e-64	1.122607e-61
MsaG019597	MsaG019672	0.828330	1.707804e-54	4.713702e-52
MsaG019597	MsaG019761	0.801699	1.335087e-48	1.875773e-46
MsaG019597	MsaG019907	0.803858	4.806000e-49	7.095741e-47
MsaG019597	MsaG019944	0.800568	2.267639e-48	3.105648e-46
MsaG019597	MsaG020550	0.807145	9.901968e-50	1.578773e-47
MsaG019597	MsaG021222	0.819789	1.690059e-52	3.696262e-50
MsaG019597	MsaG022325	0.801301	1.609059e-48	2.240399e-46
MsaG019597	MsaG023626	0.806338	1.463466e-49	2.289426e-47
MsaG019597	MsaG023649	0.818818	2.806374e-52	5.983106e-50
MsaG019597	MsaG023796	0.816915	7.511614e-52	1.524690e-49
MsaG019597	MsaG024295	0.838029	6.732326e-57	2.471352e-54
MsaG019597	MsaG025740	0.829870	7.259825e-55	2.093331e-52
MsaG019597	MsaG026585	0.800565	2.271025e-48	3.110059e-46
MsaG019597	MsaG026587	0.827871	2.200206e-54	5.995033e-52
MsaG019597	MsaG026686	0.818823	2.798534e-52	5.967201e-50
MsaG019597	MsaG027376	0.837587	8.735590e-57	3.163476e-54
MsaG019597	MsaG028277	0.813971	3.370577e-51	6.349323e-49
MsaG019597	MsaG029091	0.831512	2.887676e-55	8.728799e-53
MsaG019597	MsaG029546	0.820647	1.077468e-52	2.410580e-50
MsaG019597	MsaG029919	0.821301	7.628090e-53	1.736488e-50
MsaG019597	MsaG030396	0.803192	6.596884e-49	9.591128e-47
MsaG019597	MsaG032616	0.815711	1.392544e-51	2.740835e-49
MsaG019597	MsaG032901	0.804021	4.448343e-49	6.592705e-47
MsaG019597	MsaG032915	0.853557	4.249748e-61	2.607607e-58
MsaG019597	MsaG033670	0.834948	4.061938e-56	1.358465e-53
MsaG019597	MsaG034590	0.800563	2.273896e-48	3.113801e-46
MsaG019597	MsaG041334	0.835330	3.258195e-56	1.102202e-53
MsaG019597	MsaG043817	0.832144	2.019990e-55	6.219985e-53
MsaG019597	MsaG044200	0.841486	8.565192e-58	3.503898e-55
MsaG019597	MsaG044864	0.822823	3.399750e-53	8.061028e-51
MsaG019597	MsaG045284	0.850815	2.537243e-60	1.414374e-57
MsaG019597	MsaG045331	0.838891	4.044265e-57	1.525040e-54
MsaG019597	MsaG045365	0.809039	3.930028e-50	6.557621e-48
MsaG019597	MsaG046306	0.857040	4.162599e-62	2.896233e-59
MsaG019597	MsaG046540	0.820530	1.145490e-52	2.554960e-50
MsaG019597	MsaG046522	0.819232	2.261822e-52	4.874901e-50
MsaG019597	MsaG046503	0.816300	1.030181e-51	2.058251e-49
MsaG019597	MsaG046603	0.884388	4.296271e-71	9.552109e-68
MsaG019597	MsaG002000	0.808860	4.290414e-50	7.128214e-48
MsaG019597	MsaG001807	0.826091	5.836049e-54	1.513115e-51
MsaG019597	MsaG001987	0.826300	5.208429e-54	1.358196e-51
MsaG019597	MsaG005167	0.840225	1.827501e-57	7.184478e-55
MsaG019597	MsaG001893	0.841050	1.113561e-57	4.493199e-55
MsaG019597	MsaG028079	0.819793	1.687238e-52	3.690392e-50
MsaG019597	MsaG033602	0.800749	2.083943e-48	2.865740e-46
MsaG019597	MsaG031012	0.800821	2.014990e-48	2.775364e-46
MsaG019597	MsaG033319	0.825682	7.289000e-54	1.868420e-51
MsaG019597	MsaG031246	0.813244	4.863286e-51	8.995531e-49
MsaG019597	MsaG031847	0.832794	1.396727e-55	4.382572e-53
MsaG019597	MsaG033778	0.841947	6.481693e-58	2.690944e-55
MsaG019597	MsaG033259	0.827752	2.349549e-54	6.380668e-52
MsaG019597	MsaG038885	0.804803	3.061427e-49	4.620131e-47
MsaG019597	MsaG036286	0.809489	3.150243e-50	5.313989e-48
MsaG019597	MsaG035600	0.845287	8.368548e-59	3.870812e-56
MsaG019597	MsaG037725	0.825427	8.372990e-54	2.131084e-51
MsaG019597	MsaG039797	0.819636	1.831586e-52	3.989427e-50
MsaG019597	MsaG036758	0.850016	4.243002e-60	2.300747e-57
MsaG019597	MsaG041442	0.831926	2.286046e-55	6.994620e-53
MsaG019597	MsaG044977	0.844290	1.549303e-58	6.935610e-56

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019597	MtrunA17_Chr4g0019481	73.504	117	17	2	1	103	1	117	9.67e-49	150
MsaG019597	MtrunA17_Chr4g0019551	76.923	117	13	2	1	103	1	117	2.80e-48	149
MsaG019597	MtrunA17_Chr4g0019471	65.649	131	17	2	1	103	1	131	5.65e-46	144

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 18 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTCATTCATCTGGTGTATA+AGG	0.184471	4:-32048548	None:intergenic
TGTGGTTGAGGCTGATTATT+TGG	0.247122	4:-32048386	None:intergenic
CTCGATTCTAATATTAAATC+TGG	0.264896	4:-32048347	None:intergenic
CTCATTCATCTGGTGTATAA+GGG	0.356164	4:-32048547	None:intergenic
AGGTCGAAAGCGCGAACATT+AGG	0.356569	4:-32048518	None:intergenic
GGAGGTTGGTTTAAATCAAA+TGG	0.393156	4:-32048497	None:intergenic
CTGGTGTATAAGGGATATTA+AGG	0.496508	4:-32048538	None:intergenic
TGAGGCTGATTATTTGGTGG+TGG	0.505165	4:-32048380	None:intergenic
AAGCGCGAACATTAGGAGGT+TGG	0.511516	4:-32048511	None:intergenic
TCGAAAGCGCGAACATTAGG+AGG	0.542553	4:-32048515	None:intergenic
ACTGCTAAAGCTTGTGGAGA+TGG	0.545041	4:-32048302	None:intergenic
AAATCAAATGGTTGCACGCG+TGG	0.546490	4:-32048485	None:intergenic
AATGGTTGCACGCGTGGAGG+TGG	0.556418	4:-32048479	None:intergenic
ACATGCACTGCTAAAGCTTG+TGG	0.565788	4:-32048308	None:intergenic
GGTTGAGGCTGATTATTTGG+TGG	0.570406	4:-32048383	None:intergenic
TCAAATGGTTGCACGCGTGG+AGG	0.627906	4:-32048482	None:intergenic
GCATCAACCACAAAATGCAC+CGG	0.637007	4:+32048418	MsaT019597.1:CDS
ATATTAGAATCGAGTAAACA+AGG	0.646902	4:+32048356	MsaT019597.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	32048257	32048568	32048257	ID=MsaG019597
Chr4	mRNA	32048257	32048568	32048257	ID=MsaT019597.1;Parent=MsaG019597
Chr4	exon	32048257	32048568	32048257	ID=MsaT019597.1.exon1;Parent=MsaT019597.1
Chr4	CDS	32048257	32048568	32048257	ID=cds.MsaT019597.1;Parent=MsaT019597.1

Gene Sequence	>MsaT019597.1 ATGTCAAAGCTAGAATTCTTATGCAGTGAATGTGACACAATGTTTCCATCTCCACAAGCTTTAGCAGTGCATGTTATCGAAGAACATCATCCAGATTTAATATTAGAATCGAGTAAACAAGGTCCACCACCAAATAATCAGCCTCAACCACAAAATGATGAGCATCAACCACAAAATGCACCGGCTCTACCACAAAATGTTGAACATCAAGCACAAAATGCACCACCTCCACGCGTGCAACCATTTGATTTAAACCAACCTCCTAATGTTCGCGCTTTCGACCTTAATATCCCTTATACACCAGATGAATGA
Protein sequence	>MsaT019597.1 MSKLEFLCSECDTMFPSPQALAVHVIEEHHPDLILESSKQGPPPNNQPQPQNDEHQPQNAPALPQNVEHQAQNAPPPRVQPFDLNQPPNVRAFDLNIPYTPDE*