AlfalfaGEDB | MsaG019597

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019597	AES87959.1	73.504	117	17	2	1	103	1	117	1.05e-44	150

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019597	tr\|G7JTJ2\|G7JTJ2_MEDTR	73.504	117	17	2	1	103	1	117	5.02e-45	150

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TFs/TRs:

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Gene ID	Type	Classification
MsaG019597	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000135	MsaG019597	0.834075	6.715103e-56	2.187864e-53
MsaG001551	MsaG019597	0.820640	1.081538e-52	2.419231e-50
MsaG001939	MsaG019597	0.807883	6.917159e-50	1.122532e-47
MsaG002489	MsaG019597	0.824027	1.783636e-53	4.369323e-51
MsaG003329	MsaG019597	0.802501	9.147384e-49	1.308958e-46
MsaG003422	MsaG019597	0.843773	2.129612e-58	9.373920e-56
MsaG003470	MsaG019597	0.833465	9.527122e-56	3.048929e-53
MsaG003861	MsaG019597	0.806467	1.374708e-49	2.157218e-47
MsaG004070	MsaG019597	0.804027	4.433943e-49	6.572485e-47
MsaG004887	MsaG019597	0.805377	2.324739e-49	3.555446e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019597	MtrunA17_Chr4g0019481	73.504	117	17	2	1	103	1	117	9.67e-49	150
MsaG019597	MtrunA17_Chr4g0019551	76.923	117	13	2	1	103	1	117	2.80e-48	149
MsaG019597	MtrunA17_Chr4g0019471	65.649	131	17	2	1	103	1	131	5.65e-46	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Find 18 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAAATGGTTGCACGCG+TGG	0.546490	4:-32048485	None:intergenic
AAGCGCGAACATTAGGAGGT+TGG	0.511516	4:-32048511	None:intergenic
AATGGTTGCACGCGTGGAGG+TGG	0.556418	4:-32048479	None:intergenic
ACATGCACTGCTAAAGCTTG+TGG	0.565788	4:-32048308	None:intergenic
ACTGCTAAAGCTTGTGGAGA+TGG	0.545041	4:-32048302	None:intergenic
AGGTCGAAAGCGCGAACATT+AGG	0.356569	4:-32048518	None:intergenic
ATATTAGAATCGAGTAAACA+AGG	0.646902	4:+32048356	MsaT019597.1:CDS
CTCATTCATCTGGTGTATAA+GGG	0.356164	4:-32048547	None:intergenic
CTCGATTCTAATATTAAATC+TGG	0.264896	4:-32048347	None:intergenic
CTGGTGTATAAGGGATATTA+AGG	0.496508	4:-32048538	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	32048257	32048568	32048257	ID=MsaG019597
Chr4	mRNA	32048257	32048568	32048257	ID=MsaT019597.1;Parent=MsaG019597
Chr4	exon	32048257	32048568	32048257	ID=MsaT019597.1.exon1;Parent=MsaT019597.1
Chr4	CDS	32048257	32048568	32048257	ID=cds.MsaT019597.1;Parent=MsaT019597.1

Gene Sequence	>MsaT019597.1 ATGTCAAAGCTAGAATTCTTATGCAGTGAATGTGACACAATGTTTCCATCTCCACAAGCTTTAGCAGTGCATGTTATCGAAGAACATCATCCAGATTTAATATTAGAATCGAGTAAACAAGGTCCACCACCAAATAATCAGCCTCAACCACAAAATGATGAGCATCAACCACAAAATGCACCGGCTCTACCACAAAATGTTGAACATCAAGCACAAAATGCACCACCTCCACGCGTGCAACCATTTGATTTAAACCAACCTCCTAATGTTCGCGCTTTCGACCTTAATATCCCTTATACACCAGATGAATGA
Protein sequence	>MsaT019597.1 MSKLEFLCSECDTMFPSPQALAVHVIEEHHPDLILESSKQGPPPNNQPQPQNDEHQPQNAPALPQNVEHQAQNAPPPRVQPFDLNQPPNVRAFDLNIPYTPDE*

M. sativa ssp. caerulea / MsaG019597