AlfalfaGEDB | MsaG019780

M. sativa ssp. caerulea / MsaG019780

KEGG: -
GO: -
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019780	XP_013442533.2	75.464	1023	195	14	21	1007	24	1026	0.0	1513

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019780	sp\|Q9ZR08\|Y4230_ARATH	57.841	389	153	5	604	987	441	823	3.53e-139	441
MsaG019780	sp\|Q9ZR08\|Y4230_ARATH	38.353	425	219	14	17	430	22	414	3.12e-72	260

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019780	tr\|A0A396I3N1\|A0A396I3N1_MEDTR	75.464	1023	195	14	21	1007	24	1026	0.0	1513

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019780	MtrunA17_Chr4g0023111	75.464	1023	195	14	21	1007	24	1026	0.0	1513
MsaG019780	MtrunA17_Chr4g0023221	46.738	1027	463	25	24	1001	42	1033	0.0	840
MsaG019780	MtrunA17_Chr2g0323231	55.453	541	182	8	478	1007	2	494	0.0	572
MsaG019780	MtrunA17_Chr2g0280831	51.250	400	171	6	597	987	1	385	2.11e-128	395
MsaG019780	MtrunA17_Chr4g0055011	58.917	314	128	1	682	994	56	369	1.14e-127	392
MsaG019780	MtrunA17_Chr4g0048581	48.908	458	186	9	570	992	382	826	8.54e-127	405
MsaG019780	MtrunA17_Chr4g0048581	30.000	380	219	14	43	400	45	399	1.60e-29	126
MsaG019780	MtrunA17_Chr7g0236531	59.547	309	124	1	682	989	23	331	1.44e-126	388
MsaG019780	MtrunA17_Chr4g0048631	52.217	406	180	5	604	1001	439	838	2.14e-126	405
MsaG019780	MtrunA17_Chr4g0048631	28.297	417	246	22	8	403	11	395	1.33e-25	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019780	AT4G03230.4	45.427	1006	468	27	17	987	22	981	0.0	807
MsaG019780	AT4G03230.1	45.427	1006	468	27	17	987	22	981	0.0	807
MsaG019780	AT4G03230.5	46.221	913	424	24	110	987	29	909	0.0	753
MsaG019780	AT4G03230.2	44.359	913	413	25	110	987	29	881	0.0	705
MsaG019780	AT4G03230.6	44.359	913	413	25	110	987	29	881	0.0	705
MsaG019780	AT4G03230.7	45.907	843	393	21	182	987	8	824	0.0	697
MsaG019780	AT4G03230.3	45.843	842	393	21	183	987	1	816	0.0	696
MsaG019780	AT4G03230.8	57.841	389	153	5	604	987	441	823	3.59e-140	441
MsaG019780	AT4G03230.8	38.353	425	219	14	17	430	22	414	3.17e-73	260
MsaG019780	AT1G11330.2	50.639	391	183	4	606	995	441	822	1.29e-120	389

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Find 209 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAGACCACATTTATT+GGG	0.362588	4:-37265560	MsaT019780.1:CDS
AAACAGAGGCAAGCACAGAG+AGG	0.683074	4:-37263088	MsaT019780.1:CDS
AAACTGAAATCCCCACTTCC+TGG	0.340074	4:+37265622	None:intergenic
AAACTTGGCAAAGGTGGTTT+TGG	0.245550	4:-37263704	MsaT019780.1:CDS
AAAGGAACACTGGGTTCTAT+CGG	0.518016	4:-37262753	MsaT019780.1:CDS
AAAGTTATCACAAACGGGTT+CGG	0.490098	4:+37264315	None:intergenic
AAATCAACCACCTTGTAAAC+TGG	0.400526	4:+37263680	None:intergenic
AAATTCTTCCCTACAAGACT+TGG	0.513525	4:-37265215	MsaT019780.1:CDS
AACAGAGGCAAGCACAGAGA+GGG	0.586633	4:-37263087	MsaT019780.1:CDS
AACAGGAAGGCCGGGTATAA+AGG	0.356676	4:-37265119	MsaT019780.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	37262360	37266339	37262360	ID=MsaG019780
Chr4	mRNA	37262360	37266339	37262360	ID=MsaT019780.1;Parent=MsaG019780
Chr4	exon	37262360	37262644	37262360	ID=MsaT019780.1.exon9;Parent=MsaT019780.1
Chr4	CDS	37262360	37262644	37262360	ID=cds.MsaT019780.1;Parent=MsaT019780.1
Chr4	exon	37262723	37262873	37262723	ID=MsaT019780.1.exon8;Parent=MsaT019780.1
Chr4	CDS	37262723	37262873	37262723	ID=cds.MsaT019780.1;Parent=MsaT019780.1
Chr4	exon	37263074	37263311	37263074	ID=MsaT019780.1.exon7;Parent=MsaT019780.1
Chr4	CDS	37263074	37263311	37263074	ID=cds.MsaT019780.1;Parent=MsaT019780.1
Chr4	exon	37263402	37263609	37263402	ID=MsaT019780.1.exon6;Parent=MsaT019780.1
Chr4	CDS	37263402	37263609	37263402	ID=cds.MsaT019780.1;Parent=MsaT019780.1
Chr4	exon	37263691	37263899	37263691	ID=MsaT019780.1.exon5;Parent=MsaT019780.1
Chr4	CDS	37263691	37263899	37263691	ID=cds.MsaT019780.1;Parent=MsaT019780.1
Chr4	exon	37263999	37264124	37263999	ID=MsaT019780.1.exon4;Parent=MsaT019780.1
Chr4	CDS	37263999	37264124	37263999	ID=cds.MsaT019780.1;Parent=MsaT019780.1
Chr4	exon	37264212	37264673	37264212	ID=MsaT019780.1.exon3;Parent=MsaT019780.1
Chr4	CDS	37264212	37264673	37264212	ID=cds.MsaT019780.1;Parent=MsaT019780.1
Chr4	exon	37264897	37266175	37264897	ID=MsaT019780.1.exon2;Parent=MsaT019780.1
Chr4	CDS	37264897	37266175	37264897	ID=cds.MsaT019780.1;Parent=MsaT019780.1
Chr4	exon	37266274	37266339	37266274	ID=MsaT019780.1.exon1;Parent=MsaT019780.1
Chr4	CDS	37266274	37266339	37266274	ID=cds.MsaT019780.1;Parent=MsaT019780.1

Gene Sequence

>MsaT019780.1

ATGGAAGAAGAGGTGGGGTCATGTCCAGAAATGGCTTTAAATATGAATGCAATGCCTAAAACCAAACTTTGTTTAGCAGGAGATACTTTGAACATTAGCCAGAAGATATTAAGCAATGAACCCTTAACCAACCTTGTTTCAGCTGGAAAAATATTTGAATTTGGCTTTTTTACTCCAAGCACCAATGGTGGCTCACAAAGATACTTAGGTATATGGTATCACATGCAAGAAGAGGGGTCACAACAACCTCAAAAACAAACAGTTGTGTGGGTTGCCAACAGAGACAATCCTGTAGCTGTTGATTCAACTGGAGTTTTCCAAATAGCAGAGAATGGGAATCTTGTAGTTGTAGACACGTCCGGTAATGCAAAAAGGTACTGGTCATCTAATTCCAATTCCAAAATCAAAGACTCTTCTAGTTTTTCGCCTAAAAGCAGGACAGTGAAACTCATGGATTCTGGTAACCTTGTGTTATATGATGATGAACTCATGTTAGTGAAACTGTGGGAGAGCTTTGAAAATCCAACTGACACATTCTTACCAGGAATGAAGATGGATAGGAATTTGAGTCTGACTAGTTGGAGAAAGGCTGATGACCCAGGAAGTGGGGATTTCAGTTTTATGATGGAACAAACAGGAGACAACCGTTTTATCATCATAAAACGAGACCACATTTATTGGGAGAGCGAAGAGTGTGGAACGCTCAAAGCAAAGTTTGATGAATTGGAAGATATCAGCTTTGAGGTTTATAATTTGTTGACCAACTTCAGTTTACTAAATTCCACGAAGCGTTATGACAATACAAGGTTGTTTCTCGATTCTAAAGGTGTGATTCAGTTGGTGGAAAATTTGTTCGGAGGTGAGTTATTGGTTAGATGGAAGCAGCCAAATGCCAAATGTTTAAGATATAATGAATGTGGATACTTTGCTAGCTGTAACGGTAATGATAATGACGAGGTGTGCAAATGTTTACCCGGATTCTACAATGATTACTCGGGAGAGGGAAATTCTTCCCTACAAGACTTGGCAGGTTGTAAGAGGAGACAATTAGCATCTTGTACTGGAAATGGCACGGCGTTCTTGAACTTGACCAAGATTAAAACAGGAAGGCCGGGTATAAAGGTAACTGCAGCATATGAAGAAAATTGCACATCTATGTGCCTTGGGATGTGTCCACGATGTCAGGCTTACTCGTATGCTCCACTTCATACTGATCAACAGCAGCGTGATCTCAATCCTTCAAATTGTTGGATTTGGACACAAAGTTTAACTACTCTTAAAGAAGAGTATACTAATTGGGATTATGATCGTAGACTCGTTGTCCTAGTTGATAAATCAGACTTAGCACCAACTCCTAGAACTTGTGAGCCTTGTGGTACAAACACAGTCCCTTATCCTCTCAGTACCGGACCCAACTGTGGAGAACTCGCATACTTCAACTTTAGATGCAACACCTCAACGGGTAAACTTAGCTTCACCGCCAACAACAGCGTTAGTTACAAAGTTATTAGTGTAGACCCAAGTTCAAGAACATTTACAATTTATAATGAGCATAACTCTTTCAAACAATATTGTGCTGAAGGATCTAAATACAAAGGAAATTTAAAGGTTTTCCCACCGTTTTACTTTACCAATGACAATCCGTGCTCTGAACAAGTGGAAGTTAGTTGGGATCCACCTTCCGAACCCGTTTGTGATAACTTTGTTGATTGCCATGGTTGGGAACATTCTACCTGTAGTAAAGGAAACAGGTGCCTTTGCAATGCAAACTTTAAATGGAGTGGTGAGCTTTTACGTTGTACCGAAAAAGGGAACTCTAAAAGCTCGTTCCATTTGATTCTTGGCTTAACTCTTACCGGTTTGTTTACTATAGCATGCATCATTATTTTTGCTTATGCATGCAGAAGAAGAATAGCTCATATGGTTAAGCAAGATAAGGAAAGCATACAAAGAAATATTAGAGGGAAATTTTACAACAGTAAAAGACTTGTGAAGGACATGATAGAAATAGAGGATTTGGAAGAGAATGACAATGAAGGAATAGAGGTTCCCTATTTTGATTTTGAGAGTATATTAGTGGCCACAGATGGCTTTTCAGATGCAAATAAACTTGGCAAAGGTGGTTTTGGACCAGTTTACAAGGGTAAACTTGGTGGTCAAGAAGTTGCGATAAAGAGACTTTCAAGTGTTTCATCACAAGGTTTACAGGAATTCAAGAATGAGGTTGGTTTGATAGCTAAACTTCAACATCGAAACCTTGTTATATTACAGGGCTACTGCATAAAAGGAGAGGAAAAAATTCTAGTTTATGAATTTTTGCCTAACAAGAGTTTGGACTTATTGATATTCGATCCGACAAAAAGCGTAATTTTGGATTGGCAAATGCGGTTTGACATAATTCTCGGAATTGCTCGTGGACTTCTCTATCTTCATCAAGACTCAAGACTTAGAGTTATTCACCGAGATTTGAAAACTAGCAACATTCTTCTAGATGAGGAGATGCAACCAAAAATCTCAGATTTTGGAATAGCAAGAATAATTGCAGGCAAAGAAACAGAGGCAAGCACAGAGAGGGTTGTTGGTACATACGGGTACATGTCTCCTGAGTATGCTTTGGATGGATATATTTCAACAAAGTCGGATGTTTTCAGTTTTGGCGTTGTCTTGCTTGAGATCATCAGTGGAAAAAGGAACACTGGGTTCTATCGGTCTAAAGAGATTTCAAGTCTTTTGGGTTATGCTTGGAGACTATGGAGAGAGGATAAACTGCTAGATTTAATGGACCCGTCTCTATGTGATACTTACAATGCTAACCAATTTATTAGGTGTTCCCAAATTGGACTCTTATGCGTACAAGATGAACCAGATGATCGTCCACACATGTCAAATGTGGTGACCATGCTAGACAATGAAACTACAACCCTCTTAACCCCTAAACAACCAACCTTTTTTTCACGTCAAGACCTATCTAGTACAGCTTCTTCAAGTCTGCAGATTGAAAGTAGCATTGAAGAATGCAGATAA

Protein sequence

>MsaT019780.1

MEEEVGSCPEMALNMNAMPKTKLCLAGDTLNISQKILSNEPLTNLVSAGKIFEFGFFTPSTNGGSQRYLGIWYHMQEEGSQQPQKQTVVWVANRDNPVAVDSTGVFQIAENGNLVVVDTSGNAKRYWSSNSNSKIKDSSSFSPKSRTVKLMDSGNLVLYDDELMLVKLWESFENPTDTFLPGMKMDRNLSLTSWRKADDPGSGDFSFMMEQTGDNRFIIIKRDHIYWESEECGTLKAKFDELEDISFEVYNLLTNFSLLNSTKRYDNTRLFLDSKGVIQLVENLFGGELLVRWKQPNAKCLRYNECGYFASCNGNDNDEVCKCLPGFYNDYSGEGNSSLQDLAGCKRRQLASCTGNGTAFLNLTKIKTGRPGIKVTAAYEENCTSMCLGMCPRCQAYSYAPLHTDQQQRDLNPSNCWIWTQSLTTLKEEYTNWDYDRRLVVLVDKSDLAPTPRTCEPCGTNTVPYPLSTGPNCGELAYFNFRCNTSTGKLSFTANNSVSYKVISVDPSSRTFTIYNEHNSFKQYCAEGSKYKGNLKVFPPFYFTNDNPCSEQVEVSWDPPSEPVCDNFVDCHGWEHSTCSKGNRCLCNANFKWSGELLRCTEKGNSKSSFHLILGLTLTGLFTIACIIIFAYACRRRIAHMVKQDKESIQRNIRGKFYNSKRLVKDMIEIEDLEENDNEGIEVPYFDFESILVATDGFSDANKLGKGGFGPVYKGKLGGQEVAIKRLSSVSSQGLQEFKNEVGLIAKLQHRNLVILQGYCIKGEEKILVYEFLPNKSLDLLIFDPTKSVILDWQMRFDIILGIARGLLYLHQDSRLRVIHRDLKTSNILLDEEMQPKISDFGIARIIAGKETEASTERVVGTYGYMSPEYALDGYISTKSDVFSFGVVLLEIISGKRNTGFYRSKEISSLLGYAWRLWREDKLLDLMDPSLCDTYNANQFIRCSQIGLLCVQDEPDDRPHMSNVVTMLDNETTTLLTPKQPTFFSRQDLSSTASSSLQIESSIEECR*