AlfalfaGEDB | MsaG019842

M. sativa ssp. caerulea / MsaG019842

KEGG: -
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008544 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010016 GO:0010033 GO:0010061 GO:0010063 GO:0010103 GO:0010374 GO:0010376 GO:0010453 GO:0010455 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0022603 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042659 GO:0042660 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0046677 GO:0048367 GO:0048518 GO:0048522 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0060429 GO:0065007 GO:0080090 GO:0090558 GO:0090626 GO:0090698 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:1903888 GO:1903890 GO:1905421 GO:1905423 GO:2000026 GO:2000067 GO:2000112 GO:2000280 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019842	XP_013455622.1	91.228	57	5	0	96	152	18	74	1.03e-28	110

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019842	sp\|Q9LNI5\|ETC1_ARATH	65.306	49	14	1	104	149	32	80	1.84e-14	67.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019842	tr\|A0A072UKM9\|A0A072UKM9_MEDTR	91.228	57	5	0	96	152	18	74	4.92e-29	110

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TFs/TRs:

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Gene ID	Type	Classification
MsaG019842	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019842	MtrunA17_Chr4g0024181	91.228	57	5	0	96	152	18	74	9.48e-33	110
MsaG019842	MtrunA17_Chr2g0322831	68.000	50	16	0	102	151	30	79	2.98e-18	74.3
MsaG019842	MtrunA17_Chr2g0288361	62.500	48	18	0	104	151	27	74	1.50e-16	69.7
MsaG019842	MtrunA17_Chr5g0396771	60.417	48	19	0	104	151	37	84	1.96e-15	67.4
MsaG019842	MtrunA17_Chr4g0044421	50.943	53	25	1	95	147	60	111	3.09e-12	61.2
MsaG019842	MtrunA17_Chr7g0229101	57.143	42	18	0	106	147	30	71	5.94e-12	60.8
MsaG019842	MtrunA17_Chr4g0037141	50.943	53	25	1	95	147	60	111	8.21e-12	61.2
MsaG019842	MtrunA17_Chr5g0435101	49.057	53	26	1	95	147	59	110	8.40e-12	60.5
MsaG019842	MtrunA17_Chr4g0055981	61.905	42	16	0	106	147	113	154	1.68e-11	60.1
MsaG019842	MtrunA17_Chr4g0070641	50.000	52	25	1	95	146	60	110	1.98e-11	58.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019842	AT1G01380.1	65.306	49	14	1	104	149	32	80	1.87e-15	67.4
MsaG019842	AT2G46410.1	73.171	41	11	0	104	144	36	76	4.82e-15	66.6
MsaG019842	AT4G01060.3	63.415	41	15	0	104	144	31	71	5.21e-13	60.8
MsaG019842	AT4G01060.2	63.415	41	15	0	104	144	30	70	7.02e-13	60.5
MsaG019842	AT4G01060.1	63.415	41	15	0	104	144	33	73	7.56e-13	60.5
MsaG019842	AT5G53200.1	44.737	76	32	2	79	149	6	76	9.07e-13	61.2
MsaG019842	AT1G22640.3	50.943	53	25	1	95	147	3	54	7.42e-12	60.8
MsaG019842	AT4G38620.1	50.943	53	25	1	95	147	60	111	1.19e-11	61.2
MsaG019842	AT5G35550.2	62.500	40	14	1	107	146	77	115	1.36e-11	60.8
MsaG019842	AT1G22640.1	50.943	53	25	1	95	147	60	111	1.90e-11	60.5

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Find 26 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTTTATAATCTTGT+TGG	0.380870	4:+38460981	MsaT019842.1:CDS
AAAATTCAACCTTTGAACCT+TGG	0.444402	4:-38460935	None:intergenic
AAATGGTTTATAATCTTGTT+GGG	0.339232	4:+38460982	MsaT019842.1:CDS
AACTTGCAAGATGATGGAAG+TGG	0.645940	4:+38455818	MsaT019842.1:CDS
AAGAACTTGGAAGTGCAGAT+GGG	0.633166	4:+38455720	MsaT019842.1:CDS
AATGGTTTATAATCTTGTTG+GGG	0.563787	4:+38460983	MsaT019842.1:CDS
ACAGATCAGCAACCAGACCA+AGG	0.650716	4:+38460918	MsaT019842.1:intron
ACTTTGTTGTCGGTAATCAG+AGG	0.628650	4:-38455867	None:intergenic
AGAATTCGAGCTATTAGTGA+AGG	0.607609	4:+38455896	MsaT019842.1:CDS
AGAGGAAATGCTTATTAAAA+TGG	0.190572	4:+38460965	MsaT019842.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	38455717	38461462	38455717	ID=MsaG019842
Chr4	mRNA	38455717	38461462	38455717	ID=MsaT019842.1;Parent=MsaG019842
Chr4	exon	38455717	38455956	38455717	ID=MsaT019842.1.exon1;Parent=MsaT019842.1
Chr4	CDS	38455717	38455956	38455717	ID=cds.MsaT019842.1;Parent=MsaT019842.1
Chr4	exon	38457723	38457765	38457723	ID=MsaT019842.1.exon2;Parent=MsaT019842.1
Chr4	CDS	38457723	38457765	38457723	ID=cds.MsaT019842.1;Parent=MsaT019842.1
Chr4	exon	38460922	38461009	38460922	ID=MsaT019842.1.exon3;Parent=MsaT019842.1
Chr4	CDS	38460922	38461009	38460922	ID=cds.MsaT019842.1;Parent=MsaT019842.1
Chr4	exon	38461375	38461462	38461375	ID=MsaT019842.1.exon4;Parent=MsaT019842.1
Chr4	CDS	38461375	38461462	38461375	ID=cds.MsaT019842.1;Parent=MsaT019842.1

Gene Sequence

>MsaT019842.1

ATGAAGAACTTGGAAGTGCAGATGGGACAATTGTCTACCAACCTTGCTAATGCTACAAGAACAGGATTTTCTGGCACCACTCTAGATAATCGTAGGAATGAAACTTGCAAGATGATGGAAGTGGAAAAGAATGAAGAGAAAGAGAATGATCCTCTGATTACCGACAACAAAGTTTTAGAAGAATTCGAGCTATTAGTGAAGGAATTAAAAACTCTCAGGGATGTCTTACAAACTAGGAAACAAAGACGAAAGTTCAGTCAAGTGAGTGAGATTCTAGATGCATATCAGCAACCAGACCAAGGTTCAAAGGTTGAATTTTCTGAAGAAGAGGAAATGCTTATTAAAATGGTTTATAATCTTGTTGGGGAGAGGTGGTCATTGATTGCTGGAAGAATTCCAGGAAGAACAGCAGAAGAAATAGAAAAATATTGGAATTCAAGACGCTCGACTAGCGAATGA

Protein sequence

>MsaT019842.1

MKNLEVQMGQLSTNLANATRTGFSGTTLDNRRNETCKMMEVEKNEEKENDPLITDNKVLEEFELLVKELKTLRDVLQTRKQRRKFSQVSEILDAYQQPDQGSKVEFSEEEEMLIKMVYNLVGERWSLIAGRIPGRTAEEIEKYWNSRRSTSE*