AlfalfaGEDB | MsaG019874

M. sativa ssp. caerulea / MsaG019874

KEGG: K04498
GO: -
PFAM: PF08214.14

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019874	KEH25296.1	75.319	940	153	7	1	862	1	939	0.0	1396

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019874	sp\|Q6YXY2\|HACL1_ORYSJ	41.328	813	391	14	226	962	856	1658	0.0	594

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019874	tr\|A0A072U7G4\|A0A072U7G4_MEDTR	75.319	940	153	7	1	862	1	939	0.0	1396

TFs/TRs:

Gene ID	Type	Classification
MsaG019874	TR	TAZ

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000138	MsaG019874	0.848171	1.374972e-59	7.002973e-57
MsaG001270	MsaG019874	0.822812	3.419895e-53	8.106403e-51
MsaG001277	MsaG019874	0.838415	5.362217e-57	1.992022e-54
MsaG001855	MsaG019874	0.808539	5.020958e-50	8.277607e-48
MsaG002146	MsaG019874	0.827678	2.447181e-54	6.631944e-52
MsaG002691	MsaG019874	0.818538	3.246861e-52	6.871722e-50
MsaG002692	MsaG019874	0.819744	1.730286e-52	3.779586e-50
MsaG003309	MsaG019874	0.800349	2.511887e-48	3.423138e-46
MsaG004404	MsaG019874	0.819007	2.542971e-52	5.448560e-50
MsaG005137	MsaG019874	0.815242	1.768916e-51	3.440541e-49
MsaG005352	MsaG019874	0.820767	1.011555e-52	2.270298e-50
MsaG006550	MsaG019874	0.800963	1.885174e-48	2.604858e-46
MsaG006566	MsaG019874	0.826167	5.599581e-54	1.454845e-51
MsaG006567	MsaG019874	0.819520	1.945566e-52	4.224993e-50
MsaG007363	MsaG019874	0.812784	6.127482e-51	1.120453e-48
MsaG007447	MsaG019874	0.817138	6.698921e-52	1.367564e-49
MsaG007418	MsaG019874	0.816213	1.077223e-51	2.147462e-49
MsaG008603	MsaG019874	0.815135	1.868047e-51	3.623299e-49
MsaG008888	MsaG019874	0.810608	1.812842e-50	3.142078e-48
MsaG008877	MsaG019874	0.806711	1.222097e-49	1.928690e-47
MsaG009739	MsaG019874	0.801397	1.538326e-48	2.146588e-46
MsaG011028	MsaG019874	0.805889	1.817489e-49	2.813134e-47
MsaG011213	MsaG019874	0.844646	1.244588e-58	5.637074e-56
MsaG011559	MsaG019874	0.818593	3.155487e-52	6.687972e-50
MsaG011690	MsaG019874	0.833259	1.071735e-55	3.409155e-53
MsaG012125	MsaG019874	0.844475	1.382390e-58	6.225705e-56
MsaG012588	MsaG019874	0.823446	2.436139e-53	5.874302e-51
MsaG041937	MsaG019874	0.804527	3.492898e-49	5.237649e-47
MsaG042571	MsaG019874	0.802791	7.974906e-49	1.148755e-46
MsaG042932	MsaG019874	0.834176	6.338089e-56	2.071250e-53
MsaG044311	MsaG019874	0.801113	1.757815e-48	2.437090e-46
MsaG044870	MsaG019874	0.801453	1.498481e-48	2.093657e-46
MsaG044874	MsaG019874	0.816800	7.972824e-52	1.613422e-49
MsaG044901	MsaG019874	0.813878	3.533298e-51	6.640325e-49
MsaG045413	MsaG019874	0.803587	5.466640e-49	8.020707e-47
MsaG045841	MsaG019874	0.804132	4.217496e-49	6.266701e-47
MsaG047200	MsaG019874	0.826001	6.130543e-54	1.585478e-51
MsaG002750	MsaG019874	0.809275	3.499608e-50	5.872401e-48
MsaG001347	MsaG019874	0.808064	6.331889e-50	1.032016e-47
MsaG002355	MsaG019874	0.806529	1.334362e-49	2.096886e-47
MsaG001992	MsaG019874	0.810496	1.916714e-50	3.313047e-48
MsaG013381	MsaG019874	0.829045	1.149071e-54	3.235876e-52
MsaG011923	MsaG019874	0.801638	1.373917e-48	1.927664e-46
MsaG014384	MsaG019874	0.814410	2.698940e-51	5.140481e-49
MsaG023430	MsaG019874	0.834797	4.432856e-56	1.475875e-53
MsaG020286	MsaG019874	0.829437	9.242829e-55	2.632159e-52
MsaG018949	MsaG019874	0.814430	2.672003e-51	5.091695e-49
MsaG018140	MsaG019874	0.860943	2.859457e-63	2.304290e-60
MsaG019022	MsaG019874	0.974112	6.131478e-137	9.212020e-131
MsaG020201	MsaG019874	0.885229	2.098532e-71	4.861565e-68
MsaG019874	MsaG018691	0.826407	4.911586e-54	1.284631e-51
MsaG019874	MsaG019332	0.808193	5.945099e-50	9.719848e-48
MsaG019874	MsaG030749	0.802652	8.516061e-49	1.222863e-46
MsaG019874	MsaG032395	0.804565	3.430230e-49	5.148257e-47
MsaG019874	MsaG033779	0.803816	4.902357e-49	7.231054e-47
MsaG019874	MsaG036777	0.815634	1.448501e-51	2.845442e-49
MsaG019874	MsaG036911	0.820092	1.442289e-52	3.179909e-50
MsaG019874	MsaG043110	0.804153	4.176140e-49	6.208249e-47
MsaG019874	MsaG044986	0.803010	7.191283e-49	1.041124e-46
MsaG013088	MsaG019874	0.802225	1.041956e-48	1.481581e-46
MsaG014242	MsaG019874	0.805598	2.090225e-49	3.213269e-47
MsaG015237	MsaG019874	0.819168	2.338671e-52	5.032171e-50
MsaG015221	MsaG019874	0.845921	5.644416e-59	2.666282e-56
MsaG015782	MsaG019874	0.826795	3.973024e-54	1.050396e-51
MsaG015841	MsaG019874	0.804625	3.332876e-49	5.009010e-47
MsaG017619	MsaG019874	0.817344	6.024599e-52	1.236394e-49
MsaG018132	MsaG019874	0.802187	1.060662e-48	1.506886e-46
MsaG020840	MsaG019874	0.818821	2.802128e-52	5.974539e-50
MsaG021320	MsaG019874	0.807728	7.457645e-50	1.205738e-47
MsaG021344	MsaG019874	0.802410	9.548171e-49	1.363487e-46
MsaG021433	MsaG019874	0.843567	2.415804e-58	1.056382e-55
MsaG021438	MsaG019874	0.828082	1.959131e-54	5.369663e-52
MsaG022363	MsaG019874	0.814730	2.295149e-51	4.406491e-49
MsaG022609	MsaG019874	0.806827	1.154987e-49	1.827733e-47
MsaG023235	MsaG019874	0.804262	3.964562e-49	5.908676e-47
MsaG025316	MsaG019874	0.800188	2.708368e-48	3.677354e-46
MsaG025448	MsaG019874	0.818846	2.765813e-52	5.900985e-50
MsaG025823	MsaG019874	0.804813	3.046144e-49	4.598205e-47
MsaG028705	MsaG019874	0.804147	4.187351e-49	6.224093e-47
MsaG029109	MsaG019874	0.803561	5.535098e-49	8.116298e-47
MsaG029329	MsaG019874	0.817591	5.303652e-52	1.095357e-49
MsaG030269	MsaG019874	0.802292	1.009541e-48	1.437740e-46
MsaG030221	MsaG019874	0.834981	3.985566e-56	1.334266e-53
MsaG031217	MsaG019874	0.802786	7.995866e-49	1.151627e-46
MsaG031527	MsaG019874	0.812951	5.634384e-51	1.034593e-48
MsaG032340	MsaG019874	0.801066	1.797003e-48	2.488737e-46
MsaG034995	MsaG019874	0.805986	1.734309e-49	2.690440e-47
MsaG035206	MsaG019874	0.800868	1.971418e-48	2.718191e-46
MsaG036300	MsaG019874	0.807737	7.424489e-50	1.200630e-47
MsaG038999	MsaG019874	0.806484	1.363747e-49	2.140823e-47
MsaG039849	MsaG019874	0.800348	2.513502e-48	3.425231e-46
MsaG039975	MsaG019874	0.865302	1.303683e-64	1.246631e-61
MsaG039976	MsaG019874	0.823002	3.088973e-53	7.359759e-51
MsaG040261	MsaG019874	0.824081	1.732419e-53	4.250034e-51
MsaG040487	MsaG019874	0.812513	7.019188e-51	1.274929e-48
MsaG040748	MsaG019874	0.829873	7.248020e-55	2.090095e-52
MsaG041746	MsaG019874	0.802739	8.175366e-49	1.176218e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019874	MtrunA17_Chr6g0456851	77.218	834	110	7	1	755	1	833	0.0	1269
MsaG019874	MtrunA17_Chr6g0456851	69.492	59	18	0	804	862	815	873	2.21e-18	90.9
MsaG019874	MtrunA17_Chr5g0438991	59.829	819	237	15	202	951	163	958	0.0	914
MsaG019874	MtrunA17_Chr6g0456861	60.590	746	207	18	282	968	59	776	0.0	816
MsaG019874	MtrunA17_Chr3g0133461	61.460	685	220	10	215	862	473	1150	0.0	811
MsaG019874	MtrunA17_Chr3g0133461	41.026	195	88	3	771	965	1174	1341	2.37e-32	136
MsaG019874	MtrunA17_Chr3g0133461	42.748	131	53	5	61	170	14	143	1.48e-16	85.1
MsaG019874	MtrunA17_Chr3g0138411	63.387	620	205	8	259	862	408	1021	0.0	781
MsaG019874	MtrunA17_Chr3g0138411	56.667	120	41	2	849	965	1093	1204	2.61e-32	136
MsaG019874	MtrunA17_Chr3g0138411	34.529	223	111	6	2	205	15	221	2.54e-19	94.0
MsaG019874	MtrunA17_Chr4g0000031	40.881	795	342	18	282	962	918	1698	1.42e-163	523
MsaG019874	MtrunA17_Chr6g0456931	91.322	242	21	0	464	705	1	242	3.11e-161	473
MsaG019874	MtrunA17_Chr6g0456941	60.369	217	47	4	122	302	18	231	2.67e-61	208
MsaG019874	MtrunA17_Chr5g0402001	77.228	101	23	0	542	642	1	101	5.74e-51	174
MsaG019874	MtrunA17_Chr5g0401991	45.455	231	93	7	693	907	1	214	4.09e-47	167
MsaG019874	MtrunA17_Chr6g0456911	93.651	63	4	0	808	870	6	68	4.76e-34	125
MsaG019874	MtrunA17_Chr0c02g0489811	90.769	65	6	0	806	870	5	69	1.37e-32	120
MsaG019874	MtrunA17_Chr7g0229221	89.062	64	7	0	806	869	5	68	2.85e-31	117
MsaG019874	MtrunA17_Chr0c02g0489731	84.375	64	10	0	806	869	5	68	2.94e-29	111
MsaG019874	MtrunA17_Chr5g0439001	53.535	99	41	2	644	742	1	94	1.01e-25	103
MsaG019874	MtrunA17_Chr6g0456921	41.176	153	31	4	542	693	1	95	6.51e-24	103
MsaG019874	MtrunA17_Chr0c02g0489721	87.234	47	6	0	737	783	1	47	7.75e-22	89.4
MsaG019874	MtrunA17_Chr7g0229231	87.234	47	6	0	737	783	1	47	7.75e-22	89.4
MsaG019874	MtrunA17_Chr0c02g0489821	88.889	45	5	0	739	783	1	45	8.87e-21	86.3
MsaG019874	MtrunA17_Chr6g0456791	48.235	85	35	3	224	306	65	142	1.28e-14	72.8
MsaG019874	MtrunA17_Chr1g0169961	35.185	162	62	7	240	361	10	168	1.37e-13	69.7
MsaG019874	MtrunA17_Chr5g0401281	35.000	100	63	2	853	950	251	350	7.61e-12	68.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019874	AT1G79000.1	41.825	789	344	15	282	962	905	1686	0.0	579
MsaG019874	AT1G79000.2	41.825	789	344	15	282	962	905	1686	0.0	579
MsaG019874	AT1G79000.3	41.825	789	344	15	282	962	881	1662	0.0	578
MsaG019874	AT1G16710.2	41.087	791	347	14	282	962	885	1666	2.42e-168	535
MsaG019874	AT1G16710.1	41.087	791	347	14	282	962	914	1695	3.44e-168	535
MsaG019874	AT3G12980.2	45.840	613	294	11	282	862	805	1411	1.65e-165	526
MsaG019874	AT3G12980.2	40.476	84	47	1	879	962	1497	1577	1.63e-13	75.9
MsaG019874	AT1G16710.6	47.145	613	287	9	282	862	849	1456	2.66e-165	526
MsaG019874	AT1G16710.6	44.231	104	53	1	864	962	1527	1630	8.58e-20	96.3
MsaG019874	AT1G16710.4	47.145	613	287	9	282	862	849	1456	2.66e-165	526
MsaG019874	AT1G16710.4	44.231	104	53	1	864	962	1527	1630	8.58e-20	96.3
MsaG019874	AT1G16710.5	47.145	613	287	9	282	862	849	1456	2.66e-165	526
MsaG019874	AT1G16710.5	44.231	104	53	1	864	962	1527	1630	8.58e-20	96.3
MsaG019874	AT3G12980.1	45.840	613	294	11	282	862	886	1492	3.39e-165	526
MsaG019874	AT3G12980.1	40.964	83	46	1	880	962	1579	1658	1.39e-13	75.9
MsaG019874	AT1G16710.3	47.145	613	287	9	282	862	888	1495	6.05e-165	526
MsaG019874	AT1G16710.3	44.231	104	53	1	864	962	1566	1669	8.01e-20	96.3
MsaG019874	AT1G16710.10	47.145	613	287	9	282	862	888	1495	6.05e-165	526
MsaG019874	AT1G16710.10	44.231	104	53	1	864	962	1566	1669	8.01e-20	96.3
MsaG019874	AT1G16710.8	47.145	613	287	9	282	862	888	1495	6.05e-165	526
MsaG019874	AT1G16710.8	44.231	104	53	1	864	962	1566	1669	8.01e-20	96.3
MsaG019874	AT1G16710.7	47.145	613	287	9	282	862	888	1495	6.05e-165	526
MsaG019874	AT1G16710.7	44.231	104	53	1	864	962	1566	1669	8.01e-20	96.3
MsaG019874	AT1G55970.1	42.386	637	322	12	262	862	661	1288	2.37e-152	488
MsaG019874	AT1G55970.2	42.857	637	305	13	262	862	661	1274	5.49e-152	487
MsaG019874	AT1G16710.9	48.302	530	245	8	282	787	888	1412	4.62e-147	474
MsaG019874	AT1G67220.1	42.439	615	309	14	282	862	605	1208	1.77e-135	441
MsaG019874	AT5G67480.1	35.294	102	63	2	853	951	244	345	2.98e-11	67.0
MsaG019874	AT5G67480.3	35.294	102	63	2	853	951	244	345	2.98e-11	67.0
MsaG019874	AT5G67480.2	35.294	102	63	2	853	951	255	356	2.98e-11	67.0

Find 159 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CACTGAATGCGAGAAATTTC+TGG	0.131132	4:+39235582	MsaT019874.1:CDS
CTTTATAACGTAACTGTTTC+TGG	0.147908	4:+39220710	MsaT019874.1:CDS
CTCTTGTAGGCAATATATTT+TGG	0.161705	4:-39235480	None:intergenic
TAGCATTGAATGAAATAAAA+AGG	0.174537	4:+39235647	MsaT019874.1:CDS
ACTGAAAAGTAGATCTTTAA+AGG	0.210937	4:+39223221	MsaT019874.1:CDS
AAATTCCCTTAAAAGATATT+TGG	0.214520	4:+39221970	MsaT019874.1:CDS
AGAGTGGATTGTTTGAAAAT+AGG	0.216587	4:+39235901	MsaT019874.1:CDS
TGAGAAAATTGCAACTGTTT+TGG	0.240203	4:+39220413	MsaT019874.1:CDS
ATCACAGAAGTTAGATATTC+AGG	0.255710	4:+39220995	MsaT019874.1:CDS
GAGTGGATTGTTTGAAAATA+GGG	0.256306	4:+39235902	MsaT019874.1:CDS
TTCCGAGTCTTTGCAATTCC+TGG	0.259668	4:-39236371	None:intergenic
TAATCATCCCCTCGTTTCTT+AGG	0.262913	4:-39222823	None:intergenic
AAAGATATTTGGACTGCTTT+TGG	0.270452	4:+39221981	MsaT019874.1:CDS
ACTTGTCTTTAGACATCTTT+TGG	0.301404	4:-39221680	None:intergenic
TGCTCTACATCAATAGGAAT+TGG	0.311866	4:-39221242	None:intergenic
TTTCTTCTCTCTCTTGCATT+AGG	0.317914	4:-39222064	None:intergenic
AGCACATGTGGGGATTGATT+TGG	0.318710	4:-39220675	None:intergenic
AACATCATCATTTACTTGAT+TGG	0.320091	4:-39221306	None:intergenic
GCTCGTCTTCCGTACTTTGA+TGG	0.323001	4:+39223111	MsaT019874.1:CDS
GACAGTGAAGAAGCAGTTTC+GGG	0.327660	4:+39222317	MsaT019874.1:CDS
GCACATGTGGGGATTGATTT+GGG	0.338539	4:-39220674	None:intergenic
GCAATGTATGTCCAGGAGTT+TGG	0.342259	4:+39222523	MsaT019874.1:CDS
AGTTGTTTACCATGAGATAT+TGG	0.342701	4:+39222654	MsaT019874.1:CDS
AGGAAAAGCAAAAGACATTC+TGG	0.348128	4:+39223269	MsaT019874.1:CDS
TTGTCATAGAGCTGAAGTTT+TGG	0.349357	4:+39236594	MsaT019874.1:CDS
CTCTTAAAAGAGATTGAAAA+TGG	0.350247	4:+39221942	MsaT019874.1:CDS
CCGCTTGTAGTCTGTCTTTG+AGG	0.353537	4:-39222616	None:intergenic
AAAGAGTGCAGAGGCGACTA+TGG	0.361570	4:+39223180	MsaT019874.1:CDS
TGTGCACTCTAACAAAGATT+TGG	0.367428	4:+39221887	MsaT019874.1:CDS
AATATATACGCAGCGTTGAT+TGG	0.372520	4:-39222563	None:intergenic
CTTCTATTTCAGAAGATTGA+AGG	0.372760	4:+39222481	MsaT019874.1:CDS
TCAACGTGTGGCAGCTGAAC+TGG	0.379094	4:+39220574	MsaT019874.1:CDS
TTCTGTAGCTTATCATCCTT+CGG	0.383070	4:-39222880	None:intergenic
CTGCTGGTCTGCTGCTGCTA+TGG	0.383607	4:+39223137	MsaT019874.1:CDS
AATTTCCATTGGATTATGAT+TGG	0.384601	4:-39221174	None:intergenic
GTTCATTCATTGCACATAGT+TGG	0.400014	4:-39221536	None:intergenic
AATGTAGAATACCGCATTGC+AGG	0.402626	4:+39236392	MsaT019874.1:CDS
TTCTTGCACGGAGGAGTAGA+TGG	0.405710	4:-39236010	None:intergenic
TCATGAGATAGTCCCGCTTC+AGG	0.409762	4:-39220638	None:intergenic
TGACAGTGAAGAAGCAGTTT+CGG	0.414647	4:+39222316	MsaT019874.1:CDS
TAATTGCATTAACTGCAAAC+TGG	0.415917	4:-39220386	None:intergenic
GATTGGCATCTGTCCTCTCC+TGG	0.416604	4:-39221289	None:intergenic
AAGACGATCACGCCAGTTTG+TGG	0.421139	4:-39220213	None:intergenic
CATCAATAGGAATTGGAACT+TGG	0.425428	4:-39221235	None:intergenic
GAAGAAAGGCAGAAAATTGA+AGG	0.426882	4:+39222080	MsaT019874.1:CDS
ACAGATTTGTACGGGTGAAA+AGG	0.429194	4:-39221562	None:intergenic
ACTAAAGAAAATGTAGTTGT+TGG	0.437632	4:+39223024	MsaT019874.1:CDS
TCCAAGACACAATCACTTCA+TGG	0.439524	4:-39235546	None:intergenic
AACGTAACTGTTTCTGGTGG+TGG	0.441745	4:+39220716	MsaT019874.1:CDS
TTCTTGATCTGTGAACAGTT+TGG	0.442614	4:-39236259	None:intergenic
ATATATACGCAGCGTTGATT+GGG	0.447552	4:-39222562	None:intergenic
CAGATTTGTACGGGTGAAAA+GGG	0.451331	4:-39221561	None:intergenic
TGATGTCTCTATTCAACATA+AGG	0.451388	4:+39221070	MsaT019874.1:CDS
AAGTAGATCTTTAAAGGCCA+TGG	0.455345	4:+39223227	MsaT019874.1:CDS
AAGTGCAAAATTCGAGTGAA+TGG	0.459932	4:+39236301	MsaT019874.1:CDS
TTCACACAGAGTACAATTGC+GGG	0.468140	4:+39221498	MsaT019874.1:intron
CAAACTGAAACTGAGACTTC+TGG	0.468204	4:-39235944	None:intergenic
GTTCATCATGGAGGAATACT+TGG	0.469438	4:-39235982	None:intergenic
ATTTGTGTCTGCTGATTCAA+AGG	0.469536	4:+39220446	MsaT019874.1:CDS
CTCTATATGGTCACTAAGAA+CGG	0.469718	4:-39222024	None:intergenic
GCTCCAATGTCAATTTCCAT+TGG	0.472679	4:-39221185	None:intergenic
AAAGAGGGTTCTCCACAAAC+TGG	0.475653	4:+39220201	MsaT019874.1:CDS
GATCTATAAGAGAATTCAGC+AGG	0.480043	4:-39222363	None:intergenic
AGACATTCTGGTGATGGAAA+AGG	0.491080	4:+39223281	MsaT019874.1:CDS
TATTATGGCGTGCCTGAAGC+GGG	0.493702	4:+39220626	MsaT019874.1:CDS
AATCCCCACATGTGCTGATA+CGG	0.494238	4:+39220682	MsaT019874.1:CDS
CACGTTGATTCAATGTCTCC+AGG	0.497461	4:-39220559	None:intergenic
TCAGCAGGGTAATTCTCCTC+TGG	0.499997	4:-39222348	None:intergenic
ACAAGTGCATCACATTCAAC+GGG	0.505090	4:+39221697	MsaT019874.1:CDS
AGTGACAGAGCAATCGTCAT+TGG	0.506440	4:+39236619	MsaT019874.1:CDS
CACATTCCGAGCCAAACTCC+TGG	0.512470	4:-39222534	None:intergenic
CATATTTGCAATGTATGTCC+AGG	0.515033	4:+39222516	MsaT019874.1:CDS
AGCAAAAGACATTCTGGTGA+TGG	0.519846	4:+39223275	MsaT019874.1:CDS
GACAAGTGCATCACATTCAA+CGG	0.522445	4:+39221696	MsaT019874.1:CDS
ACTTCTGTGATTGACATTCA+CGG	0.524753	4:-39220983	None:intergenic
AAGACGAGCTGTTGTTACCT+TGG	0.526197	4:-39223097	None:intergenic
ATCATTATGTTTAGTGTCGG+AGG	0.527772	4:-39235868	None:intergenic
CTCCAGGAATTGCAAAGACT+CGG	0.528433	4:+39236369	MsaT019874.1:CDS
GGGATTGATTTGGGCAAAGG+AGG	0.534671	4:-39220665	None:intergenic
ATGTGAACAACAGATTTGTA+CGG	0.534724	4:-39221571	None:intergenic
ATAAGACGGAAAATAGAGTC+TGG	0.537899	4:+39221044	MsaT019874.1:CDS
AAGTGATACACAGCCGCACT+TGG	0.541016	4:+39220237	MsaT019874.1:CDS
CGTACTTTGATGGAGACTGC+TGG	0.541359	4:+39223121	MsaT019874.1:CDS
TTATACTAACTACGCACTCC+AGG	0.542229	4:+39236353	MsaT019874.1:CDS
CTCGTTTCTTACAGAAGTCA+AGG	0.543082	4:-39222768	None:intergenic
CACATCCGTATCAGCACATG+TGG	0.543462	4:-39220687	None:intergenic
CAGGAGTTTGGCTCGGAATG+TGG	0.550083	4:+39222535	MsaT019874.1:CDS
AATCCAATGGAAATTGACAT+TGG	0.550408	4:+39221182	MsaT019874.1:CDS
GTGGGGATTGATTTGGGCAA+AGG	0.551569	4:-39220668	None:intergenic
CACGGAGGAGTAGATGGTAG+AGG	0.554768	4:-39236004	None:intergenic
AATTGGAACTTGGCTTATGA+CGG	0.555170	4:-39221225	None:intergenic
ACGTGTGAACACATCAATCA+AGG	0.557731	4:-39221330	None:intergenic
TCATTATGTTTAGTGTCGGA+GGG	0.558079	4:-39235867	None:intergenic
AATCGAAATGCTAACTATGT+CGG	0.566010	4:+39221609	MsaT019874.1:CDS
TTTCAAACAATCCACTCTCA+AGG	0.566291	4:-39235896	None:intergenic
CAATTATGTGCATGTTGTTG+AGG	0.568088	4:-39220749	None:intergenic
CATCAAATGATCTCTTCCGT+TGG	0.569034	4:-39220151	None:intergenic
GATATCATTATGTTTAGTGT+CGG	0.573794	4:-39235871	None:intergenic
TCAGAGCAAAAGCAACACTC+TGG	0.573943	4:-39221654	None:intergenic
TTATTATGGCGTGCCTGAAG+CGG	0.577021	4:+39220625	MsaT019874.1:CDS
TACTGAAACACGGCACTCCA+AGG	0.577316	4:+39223080	MsaT019874.1:CDS
ATCAAATTACCAATATCTCA+TGG	0.577516	4:-39222663	None:intergenic
GGGAGGATTGACGTATCCCA+TGG	0.579000	4:-39223244	None:intergenic
ATTATATCAACAACATAAGA+CGG	0.579602	4:+39221030	MsaT019874.1:CDS
AGTAGATCTTTAAAGGCCAT+GGG	0.579630	4:+39223228	MsaT019874.1:CDS
GCCATGAAGTGATTGTGTCT+TGG	0.580667	4:+39235545	MsaT019874.1:CDS
CAAATCTGTTGTTCACATTG+TGG	0.581369	4:+39221576	MsaT019874.1:CDS
CAGCAGTCTCCATCAAAGTA+CGG	0.583174	4:-39223120	None:intergenic
AAGAAAGGCAGAAAATTGAA+GGG	0.584214	4:+39222081	MsaT019874.1:CDS
AAAGAAATGATCATACATGT+TGG	0.591926	4:-39223052	None:intergenic
AATGATATCGTCCTTGAGAG+TGG	0.592327	4:+39235885	MsaT019874.1:CDS
CAAAACCAATCATAATCCAA+TGG	0.593908	4:+39221169	MsaT019874.1:CDS
AGGCACGCCATAATAAGCAT+TGG	0.594377	4:-39220618	None:intergenic
GCAGGAAGCATATCTGAACC+TGG	0.596541	4:+39220541	MsaT019874.1:intron
TGTGAACAACAGATTTGTAC+GGG	0.599457	4:-39221570	None:intergenic
TGATTGTGTCTTGGAAGCGA+TGG	0.601116	4:+39235554	MsaT019874.1:CDS
ATGATGATGATGCTGACGAA+GGG	0.602169	4:+39221114	MsaT019874.1:CDS
CCTCAAAGACAGACTACAAG+CGG	0.602943	4:+39222616	MsaT019874.1:CDS
TTTCACACAGAGTACAATTG+CGG	0.605797	4:+39221497	MsaT019874.1:intron
TAATGCAAGAGAGAGAAGAA+AGG	0.607310	4:+39222066	MsaT019874.1:CDS
GTGGCAGCTGAACTGGATGA+TGG	0.610265	4:+39220581	MsaT019874.1:CDS
ATCTAAAGAAGCATGTAGAA+CGG	0.614737	4:+39236551	MsaT019874.1:CDS
CTTGACTTCTGTAAGAAACG+AGG	0.614782	4:+39222769	MsaT019874.1:CDS
CATTATGTTTAGTGTCGGAG+GGG	0.617166	4:-39235866	None:intergenic
GTATGTCCAGGAGTTTGGCT+CGG	0.620509	4:+39222528	MsaT019874.1:CDS
AAAACTGTAGGTTAAAGTTG+CGG	0.622973	4:+39222251	MsaT019874.1:intron
TAGATGGTAGAGGTTCATCA+TGG	0.623945	4:-39235994	None:intergenic
CGATATCGAATAAAACAAAG+AGG	0.623974	4:+39220185	MsaT019874.1:CDS
TCTTTGTTTCTACTGAAACA+CGG	0.625528	4:+39223070	MsaT019874.1:CDS
GCAGATGATCTTGAAAGACA+TGG	0.634142	4:+39221137	MsaT019874.1:CDS
TATAACGTAACTGTTTCTGG+TGG	0.634664	4:+39220713	MsaT019874.1:CDS
TTTCATTTCTCATCCAAGTG+CGG	0.639511	4:-39220250	None:intergenic
CACATGTCTCGTATATCCAA+CGG	0.640502	4:+39220135	MsaT019874.1:CDS
AGACAGAATTGGATTCAACC+AGG	0.642377	4:+39221271	MsaT019874.1:CDS
GATATCGAATAAAACAAAGA+GGG	0.644273	4:+39220186	MsaT019874.1:CDS
CGTTGGATATACGAGACATG+TGG	0.644322	4:-39220134	None:intergenic
ACATGTGGTTGAAAATCTGT+TGG	0.645288	4:-39220119	None:intergenic
GATGATGATGATGCTGACGA+AGG	0.649319	4:+39221113	MsaT019874.1:CDS
ACATCCGTATCAGCACATGT+GGG	0.652618	4:-39220686	None:intergenic
TGAAACTAAGACTTCTTGCA+CGG	0.653099	4:-39236022	None:intergenic
GTATCTTTCAATGCTAACAA+AGG	0.654595	4:+39222999	MsaT019874.1:CDS
GTTTCGGGACATCATTCCAG+AGG	0.658816	4:+39222332	MsaT019874.1:CDS
AGGGAACGAAAATCTTGATG+AGG	0.658933	4:+39222100	MsaT019874.1:CDS
CATCCGTATCAGCACATGTG+GGG	0.663516	4:-39220685	None:intergenic
CATGTGCTCCTAAGAAACGA+GGG	0.665467	4:+39222815	MsaT019874.1:CDS
GGATACGTCAATCCTCCCAA+AGG	0.668043	4:+39223249	MsaT019874.1:CDS
TGGAGGAATACTTGGCACGA+CGG	0.668087	4:-39235974	None:intergenic
GAAAACTCAGAAGACGCCGA+AGG	0.670139	4:+39222864	MsaT019874.1:CDS
AACTAAGACTTCTTGCACGG+AGG	0.671126	4:-39236019	None:intergenic
GCATGTGCTCCTAAGAAACG+AGG	0.676158	4:+39222814	MsaT019874.1:CDS
ATCTATAAGAGAATTCAGCA+GGG	0.680316	4:-39222362	None:intergenic
GAATTGGATTCAACCAGGAG+AGG	0.682302	4:+39221276	MsaT019874.1:CDS
AGGATGATAAGCTACAGAAG+TGG	0.688046	4:+39222884	MsaT019874.1:CDS
GGAGACATTGAATCAACGTG+TGG	0.696671	4:+39220562	MsaT019874.1:CDS
ATGGTAGAGGTTCATCATGG+AGG	0.705017	4:-39235991	None:intergenic
ATGTGCTCCTAAGAAACGAG+GGG	0.719999	4:+39222816	MsaT019874.1:CDS
TGATGATGATGCTGACGAAG+GGG	0.731418	4:+39221115	MsaT019874.1:CDS
ATTGTAACACACCTGCAATG+CGG	0.738397	4:-39236403	None:intergenic
AAGAACGCAAATGAGCTACG+AGG	0.795022	4:-39235510	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	39220110	39236648	39220110	ID=MsaG019874
Chr4	mRNA	39220110	39236648	39220110	ID=MsaT019874.1;Parent=MsaG019874
Chr4	exon	39220110	39220273	39220110	ID=MsaT019874.1.exon1;Parent=MsaT019874.1
Chr4	CDS	39220110	39220273	39220110	ID=cds.MsaT019874.1;Parent=MsaT019874.1
Chr4	exon	39220374	39220467	39220374	ID=MsaT019874.1.exon2;Parent=MsaT019874.1
Chr4	CDS	39220374	39220467	39220374	ID=cds.MsaT019874.1;Parent=MsaT019874.1
Chr4	exon	39220545	39220770	39220545	ID=MsaT019874.1.exon3;Parent=MsaT019874.1
Chr4	CDS	39220545	39220770	39220545	ID=cds.MsaT019874.1;Parent=MsaT019874.1
Chr4	exon	39220967	39221400	39220967	ID=MsaT019874.1.exon4;Parent=MsaT019874.1
Chr4	CDS	39220967	39221400	39220967	ID=cds.MsaT019874.1;Parent=MsaT019874.1
Chr4	exon	39221507	39221779	39221507	ID=MsaT019874.1.exon5;Parent=MsaT019874.1
Chr4	CDS	39221507	39221779	39221507	ID=cds.MsaT019874.1;Parent=MsaT019874.1
Chr4	exon	39221870	39222121	39221870	ID=MsaT019874.1.exon6;Parent=MsaT019874.1
Chr4	CDS	39221870	39222121	39221870	ID=cds.MsaT019874.1;Parent=MsaT019874.1
Chr4	exon	39222261	39222389	39222261	ID=MsaT019874.1.exon7;Parent=MsaT019874.1
Chr4	CDS	39222261	39222389	39222261	ID=cds.MsaT019874.1;Parent=MsaT019874.1
Chr4	exon	39222475	39222675	39222475	ID=MsaT019874.1.exon8;Parent=MsaT019874.1
Chr4	CDS	39222475	39222675	39222475	ID=cds.MsaT019874.1;Parent=MsaT019874.1
Chr4	exon	39222760	39222905	39222760	ID=MsaT019874.1.exon9;Parent=MsaT019874.1
Chr4	CDS	39222760	39222905	39222760	ID=cds.MsaT019874.1;Parent=MsaT019874.1
Chr4	exon	39222999	39223302	39222999	ID=MsaT019874.1.exon10;Parent=MsaT019874.1
Chr4	CDS	39222999	39223302	39222999	ID=cds.MsaT019874.1;Parent=MsaT019874.1
Chr4	exon	39235475	39235669	39235475	ID=MsaT019874.1.exon11;Parent=MsaT019874.1
Chr4	CDS	39235475	39235669	39235475	ID=cds.MsaT019874.1;Parent=MsaT019874.1
Chr4	exon	39235849	39236038	39235849	ID=MsaT019874.1.exon12;Parent=MsaT019874.1
Chr4	CDS	39235849	39236038	39235849	ID=cds.MsaT019874.1;Parent=MsaT019874.1
Chr4	exon	39236215	39236413	39236215	ID=MsaT019874.1.exon13;Parent=MsaT019874.1
Chr4	CDS	39236215	39236413	39236215	ID=cds.MsaT019874.1;Parent=MsaT019874.1
Chr4	exon	39236549	39236648	39236549	ID=MsaT019874.1.exon14;Parent=MsaT019874.1
Chr4	CDS	39236549	39236648	39236549	ID=cds.MsaT019874.1;Parent=MsaT019874.1

Gene Sequence

>MsaT019874.1

ATGCAAATACCAACAGATTTTCAACCACATGTCTCGTATATCCAACGGAAGAGATCATTTGATGAATTAAGCAATCGATATCGAATAAAACAAAGAGGGTTCTCCACAAACTGGCGTGATCGTCTTCAAGTGATACACAGCCGCACTTGGATGAGAAATGAAATTTCAAAATTGATCCAGTTTGCAGTTAATGCAATTAATAATGAGAAAATTGCAACTGTTTTGGAATGGAGGCTATTTGTGTCTGCTGATTCAAAGGAAGCATATCTGAACCTGGAGACATTGAATCAACGTGTGGCAGCTGAACTGGATGATGGTGCAATCTCTTTTGCCAATGCTTATTATGGCGTGCCTGAAGCGGGACTATCTCATGAGCTGCCTCCTTTGCCCAAATCAATCCCCACATGTGCTGATACGGATGTGCTTTATAACGTAACTGTTTCTGGTGGTGGAAGCTATGTTCCTCAACAACATGCACATAATTACTTCTGTGATTTCTTCCGTGAATGTCAATCACAGAAGTTAGATATTCAGGATAATCTTGCTCATTATATCAACAACATAAGACGGAAAATAGAGTCTGGTTGTGATGTCTCTATTCAACATAAGGATGTTATTATTATTGATGATGATGATGATGATGCTGACGAAGGGGCAGATGATCTTGAAAGACATGGCATGACAGACAAAACCAATCATAATCCAATGGAAATTGACATTGGAGCGAATCACAGTATGCATGCCGTCATAAGCCAAGTTCCAATTCCTATTGATGTAGAGCAAAAAGAAGACAGAATTGGATTCAACCAGGAGAGGACAGATGCCAATCAAGTAAATGATGATGTTTCCTTGATTGATGTGTTCACACGTGACCAAATAAAAGAACATCTTGATAGTCTGAAAAAGCAATCTGTTCAGAGTACAATTGCGGGCGACAACGACACATGCCAACTATGTGCAATGAATGAACTTCCCTTTTCACCCGTACAAATCTGTTGTTCACATTGTGGCAAATGCATCAATCGAAATGCTAACTATGTCGGTAAAAAAGGAGAAGAATTTGATCCAGAGTGTTGCTTTTGCTCTGATTGCCAAAAGATGTCTAAAGACAAGTGCATCACATTCAACGGGACATCTGTTTCAAAGACACTTCTTGAAAAAATGAAAAATGATGAAATAATTAATGAACCTGATGGCAGCATCAAATATGTGCACTCTAACAAAGATTTGGACTGCAATTCTGAGTATACATGTCCTTTATGCCTCTTAAAAGAGATTGAAAATGGAATGCAAATTCCCTTAAAAGATATTTGGACTGCTTTTGGCGCTAAGGACCTGCCGAAAACCGTTCTTAGTGACCATATAGAGAAAAGACTTTTTGAGCGCCTAATGCAAGAGAGAGAAGAAAGGCAGAAAATTGAAGGGAACGAAAATCTTGATGAGGTTAAAGTTGCGGAAAGTCTCACTGTTAGAGAAGTGATATCTGTTGACAAACAACTGACAGTGAAGAAGCAGTTTCGGGACATCATTCCAGAGGAGAATTACCCTGCTGAATTCTCTTATAGATCAAGAGTTATTCTTCTATTTCAGAAGATTGAAGGAGCAGATGTATGCATATTTGCAATGTATGTCCAGGAGTTTGGCTCGGAATGTGGCAATCCCAATCAACGCTGCGTATATATTTCATATCTCGATTCTGTCAATCATTTTACACCTCAAAGACAGACTACAAGCGGAGAAGCTCTTCGCACAGTTGTTTACCATGAGATATTGATTGGGTACCTTGACTTCTGTAAGAAACGAGGTTTTGCAACTTGCTACATTCATGCATGTGCTCCTAAGAAACGAGGGGATGATTACATTCTAAATTGCCATCCGAAAACTCAGAAGACGCCGAAGGATGATAAGCTACAGAAGTGGTATCTTTCAATGCTAACAAAGGCCACTAAAGAAAATGTAGTTGTTGGTTTAACCAACATGTATGATCATTTCTTTGTTTCTACTGAAACACGGCACTCCAAGGTAACAACAGCTCGTCTTCCGTACTTTGATGGAGACTGCTGGTCTGCTGCTGCTATGGATCACGCCGAGATCATTGAAAAAGAGTGCAGAGGCGACTATGGAAATGCATTGAAGAAAGCACTGAAAAGTAGATCTTTAAAGGCCATGGGATACGTCAATCCTCCCAAAGGAAAAGCAAAAGACATTCTGGTGATGGAAAAGGTTGGCCAAAATATATTGCCTACAAGAGAAAACTTCCTCGTAGCTCATTTGCGTTCTTCATACATGCACTGCCATGAAGTGATTGTGTCTTGGAAGCGATGGTTTTGCACTGAATGCGAGAAATTTCTGGATTGTGAAAAATATGATAACTTGAATACATATTTGAAATGTTTAGCATTGAATGAAATAAAAAGGGCTGCTGTTGATGATTTCCCCTCCGACACTAAACATAATGATATCGTCCTTGAGAGTGGATTGTTTGAAAATAGGGAGAACTTTTTGATATTCTGCCAGAAGTCTCAGTTTCAGTTTGACACACTCCGTCGTGCCAAGTATTCCTCCATGATGAACCTCTACCATCTACTCCTCCGTGCAAGAAGTCTTAATGGTGAAACTGATGAACGTTTTGAAGCATCTCAATGCTGTCATCCAAACTGTTCACAGATCAAGAAGTTGTTCTCTCATGCCAGTAAGTGCAAAATTCGAGTGAATGGAAGCTGCCACAATTGTAAAAAGATATGGTTTATACTAACTACGCACTCCAGGAATTGCAAAGACTCGGAATGTAGAATACCGCATTGCAGTGATCTAAAGAAGCATGTAGAACGGAGATCAATGCATTCTGAATCTTGTCATAGAGCTGAAGTTTTGGAAAGTGACAGAGCAATCGTCATTGGTCAATGA

Protein sequence

>MsaT019874.1

MQIPTDFQPHVSYIQRKRSFDELSNRYRIKQRGFSTNWRDRLQVIHSRTWMRNEISKLIQFAVNAINNEKIATVLEWRLFVSADSKEAYLNLETLNQRVAAELDDGAISFANAYYGVPEAGLSHELPPLPKSIPTCADTDVLYNVTVSGGGSYVPQQHAHNYFCDFFRECQSQKLDIQDNLAHYINNIRRKIESGCDVSIQHKDVIIIDDDDDDADEGADDLERHGMTDKTNHNPMEIDIGANHSMHAVISQVPIPIDVEQKEDRIGFNQERTDANQVNDDVSLIDVFTRDQIKEHLDSLKKQSVQSTIAGDNDTCQLCAMNELPFSPVQICCSHCGKCINRNANYVGKKGEEFDPECCFCSDCQKMSKDKCITFNGTSVSKTLLEKMKNDEIINEPDGSIKYVHSNKDLDCNSEYTCPLCLLKEIENGMQIPLKDIWTAFGAKDLPKTVLSDHIEKRLFERLMQEREERQKIEGNENLDEVKVAESLTVREVISVDKQLTVKKQFRDIIPEENYPAEFSYRSRVILLFQKIEGADVCIFAMYVQEFGSECGNPNQRCVYISYLDSVNHFTPQRQTTSGEALRTVVYHEILIGYLDFCKKRGFATCYIHACAPKKRGDDYILNCHPKTQKTPKDDKLQKWYLSMLTKATKENVVVGLTNMYDHFFVSTETRHSKVTTARLPYFDGDCWSAAAMDHAEIIEKECRGDYGNALKKALKSRSLKAMGYVNPPKGKAKDILVMEKVGQNILPTRENFLVAHLRSSYMHCHEVIVSWKRWFCTECEKFLDCEKYDNLNTYLKCLALNEIKRAAVDDFPSDTKHNDIVLESGLFENRENFLIFCQKSQFQFDTLRRAKYSSMMNLYHLLLRARSLNGETDERFEASQCCHPNCSQIKKLFSHASKCKIRVNGSCHNCKKIWFILTTHSRNCKDSECRIPHCSDLKKHVERRSMHSESCHRAEVLESDRAIVIGQ*