AlfalfaGEDB | MsaG019889

M. sativa ssp. caerulea / MsaG019889

KEGG: K14492
GO: GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00072.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019889	XP_004511028.2	85.625	160	15	1	1	152	45	204	1.07e-93	280

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019889	sp\|O80366\|ARR9_ARATH	67.742	155	40	1	1	145	1	155	1.21e-72	220

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019889	tr\|A0A1S2YWH2\|A0A1S2YWH2_CICAR	85.625	160	15	1	1	152	45	204	5.12e-94	280

TFs/TRs:

Gene ID	Type	Classification
MsaG019889	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000405	MsaG019889	0.843804	2.088683e-58	9.202871e-56
MsaG002735	MsaG019889	0.818119	4.035036e-52	8.448024e-50
MsaG003679	MsaG019889	0.809461	3.193754e-50	5.383696e-48
MsaG004094	MsaG019889	0.816165	1.104378e-51	2.198875e-49
MsaG004097	MsaG019889	0.807908	6.830463e-50	1.109161e-47
MsaG006237	MsaG019889	0.805721	1.970216e-49	3.037532e-47
MsaG007167	MsaG019889	0.809340	3.389048e-50	5.695780e-48
MsaG010816	MsaG019889	0.852521	8.382685e-61	4.958726e-58
MsaG011225	MsaG019889	0.804883	2.945592e-49	4.453699e-47
MsaG012704	MsaG019889	0.820607	1.100375e-52	2.459210e-50
MsaG016862	MsaG019889	0.813350	4.610688e-51	8.550899e-49
MsaG017170	MsaG019889	0.851346	1.800906e-60	1.022371e-57
MsaG018506	MsaG019889	0.826147	5.660807e-54	1.469968e-51
MsaG018909	MsaG019889	0.850360	3.402218e-60	1.866752e-57
MsaG019007	MsaG019889	0.808363	5.470648e-50	8.980655e-48
MsaG019889	MsaG020323	0.816321	1.019173e-51	2.037336e-49
MsaG019889	MsaG021026	0.809733	2.793118e-50	4.739207e-48
MsaG019889	MsaG021286	0.801484	1.476721e-48	2.064657e-46
MsaG019889	MsaG021311	0.814980	2.021445e-51	3.905710e-49
MsaG019889	MsaG021467	0.812682	6.449925e-51	1.176417e-48
MsaG019889	MsaG021477	0.824674	1.258325e-53	3.137262e-51
MsaG019889	MsaG021485	0.811888	9.593413e-51	1.715759e-48
MsaG019889	MsaG023205	0.836298	1.857479e-56	6.469055e-54
MsaG019889	MsaG026261	0.800044	2.896420e-48	3.920007e-46
MsaG019889	MsaG027027	0.803017	7.167349e-49	1.037830e-46
MsaG019889	MsaG027933	0.818513	3.289362e-52	6.957184e-50
MsaG019889	MsaG028091	0.829442	9.214027e-55	2.624363e-52
MsaG019889	MsaG028804	0.817058	6.978778e-52	1.421767e-49
MsaG019889	MsaG028823	0.848927	8.510554e-60	4.446749e-57
MsaG019889	MsaG029523	0.801702	1.333266e-48	1.873333e-46
MsaG019889	MsaG029525	0.806864	1.134890e-49	1.797483e-47
MsaG019889	MsaG029762	0.823654	2.179812e-53	5.286182e-51
MsaG019889	MsaG034207	0.872658	5.511736e-67	7.154266e-64
MsaG019889	MsaG035749	0.805476	2.217016e-49	3.398440e-47
MsaG019889	MsaG040649	0.800259	2.619906e-48	3.562977e-46
MsaG019889	MsaG044390	0.806459	1.380361e-49	2.165651e-47
MsaG019889	MsaG045263	0.815522	1.533718e-51	3.004198e-49
MsaG019889	MsaG045823	0.814818	2.194563e-51	4.222910e-49
MsaG019889	MsaG045973	0.803314	6.226101e-49	9.077303e-47
MsaG019889	MsaG007338	0.801080	1.784672e-48	2.472482e-46
MsaG019889	MsaG009207	0.820495	1.167308e-52	2.601160e-50
MsaG019889	MsaG013872	0.813683	3.898764e-51	7.291248e-49
MsaG019889	MsaG014704	0.833611	8.760298e-56	2.815602e-53
MsaG019889	MsaG011633	0.821128	8.358250e-53	1.894017e-50
MsaG019889	MsaG033676	0.818103	4.067783e-52	8.513158e-50
MsaG019889	MsaG036665	0.810783	1.662092e-50	2.893147e-48
MsaG019889	MsaG036963	0.814415	2.692198e-51	5.128307e-49
MsaG019889	MsaG037372	0.835569	2.836790e-56	9.665569e-54

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019889	MtrunA17_Chr8g0352871	85.806	155	14	1	1	147	1	155	7.32e-94	269
MsaG019889	MtrunA17_Chr3g0082861	74.839	155	30	1	7	152	2	156	2.61e-82	239
MsaG019889	MtrunA17_Chr7g0256551	69.427	157	39	1	1	148	1	157	6.78e-79	233
MsaG019889	MtrunA17_Chr4g0021731	96.512	86	3	0	1	86	3	88	1.74e-56	171
MsaG019889	MtrunA17_Chr3g0124861	54.717	159	53	3	9	149	22	179	9.64e-56	174
MsaG019889	MtrunA17_Chr4g0059571	58.042	143	60	0	4	146	21	163	1.08e-53	168
MsaG019889	MtrunA17_Chr3g0128691	60.305	131	48	2	10	137	19	148	1.87e-51	161
MsaG019889	MtrunA17_Chr5g0414931	55.479	146	59	2	8	148	15	159	3.44e-51	163
MsaG019889	MtrunA17_Chr3g0118211	51.678	149	72	0	4	152	18	166	4.05e-51	161
MsaG019889	MtrunA17_Chr1g0170741	59.854	137	52	2	8	141	7	143	5.05e-50	159
MsaG019889	MtrunA17_Chr4g0030271	29.545	132	84	2	7	138	87	209	3.61e-15	71.6
MsaG019889	MtrunA17_Chr8g0345901	29.008	131	84	1	11	141	38	159	3.66e-15	71.6
MsaG019889	MtrunA17_Chr8g0376881	30.769	143	87	3	4	146	24	154	6.90e-15	70.9
MsaG019889	MtrunA17_Chr1g0181811	28.125	128	83	2	11	138	87	205	2.58e-13	66.2
MsaG019889	MtrunA17_Chr7g0275891	31.429	140	83	4	11	150	11	137	3.60e-13	65.5
MsaG019889	MtrunA17_Chr1g0149841	29.286	140	85	3	11	150	11	136	1.18e-12	64.3
MsaG019889	MtrunA17_Chr3g0123131	28.676	136	85	2	11	146	19	142	1.21e-12	64.3
MsaG019889	MtrunA17_Chr1g0161431	30.216	139	85	3	9	147	15	141	1.44e-12	63.9
MsaG019889	MtrunA17_Chr1g0149851	31.538	130	77	3	11	140	11	128	3.11e-12	63.2
MsaG019889	MtrunA17_Chr7g0275401	30.303	132	80	3	9	140	9	128	3.28e-12	62.4
MsaG019889	MtrunA17_Chr7g0276361	26.515	132	88	1	7	138	12	134	1.59e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019889	AT3G57040.2	67.742	155	40	1	1	145	1	155	1.23e-73	220
MsaG019889	AT3G57040.1	67.742	155	40	1	1	145	1	155	1.23e-73	220
MsaG019889	AT2G41310.1	63.871	155	48	1	1	147	1	155	1.01e-70	213
MsaG019889	AT1G59940.1	61.832	131	50	0	8	138	32	162	1.45e-55	174
MsaG019889	AT1G59940.2	61.832	131	50	0	8	138	124	254	5.10e-54	173
MsaG019889	AT3G48100.1	58.273	139	57	1	2	139	18	156	6.34e-54	168
MsaG019889	AT1G10470.3	60.305	131	52	0	8	138	19	149	7.62e-54	170
MsaG019889	AT1G10470.1	60.305	131	52	0	8	138	33	163	9.57e-54	171
MsaG019889	AT5G62920.1	61.538	130	50	0	9	138	25	154	2.17e-52	164
MsaG019889	AT1G19050.1	55.147	136	61	0	8	143	23	158	5.64e-52	164
MsaG019889	AT1G74890.1	56.934	137	59	0	8	144	17	153	9.93e-52	164
MsaG019889	AT3G56380.1	53.623	138	63	1	4	140	15	152	4.96e-51	160
MsaG019889	AT3G56380.2	53.237	139	63	2	4	140	15	153	3.18e-49	155
MsaG019889	AT2G40670.1	52.518	139	57	2	8	140	28	163	4.88e-49	155
MsaG019889	AT2G40670.2	52.143	140	57	3	8	140	28	164	3.43e-47	150
MsaG019889	AT2G07440.1	65.574	61	21	0	87	147	9	69	8.31e-23	87.8
MsaG019889	AT1G10470.2	58.491	53	22	0	86	138	35	87	3.39e-16	72.0
MsaG019889	AT2G25180.1	32.308	130	76	3	11	140	19	136	8.84e-14	67.8
MsaG019889	AT5G07210.2	28.472	144	90	3	8	151	15	145	1.96e-13	67.0
MsaG019889	AT5G60100.7	30.469	128	80	2	11	138	66	184	6.58e-13	65.5
MsaG019889	AT5G60100.6	30.469	128	80	2	11	138	66	184	6.58e-13	65.5
MsaG019889	AT5G60100.4	30.469	128	80	2	11	138	66	184	6.58e-13	65.5
MsaG019889	AT5G60100.2	30.469	128	80	2	11	138	66	184	8.13e-13	65.1
MsaG019889	AT5G02810.1	27.344	128	84	2	11	138	80	198	9.49e-13	65.1
MsaG019889	AT1G67710.1	28.148	135	85	2	9	143	11	133	1.11e-12	64.7
MsaG019889	AT5G60100.5	30.469	128	80	2	11	138	66	184	1.50e-12	64.3
MsaG019889	AT5G60100.3	30.469	128	80	2	11	138	66	184	1.50e-12	64.3
MsaG019889	AT5G60100.1	30.469	128	80	2	11	138	66	184	1.50e-12	64.3
MsaG019889	AT3G16857.1	28.889	135	84	3	9	143	37	159	1.03e-11	62.0
MsaG019889	AT3G16857.2	28.889	135	84	3	9	143	37	159	1.04e-11	62.0
MsaG019889	AT2G46790.3	25.170	147	100	3	6	152	34	170	1.99e-11	61.2
MsaG019889	AT2G46790.1	25.170	147	100	3	6	152	34	170	2.01e-11	61.2
MsaG019889	AT1G49190.1	28.788	132	82	3	10	141	35	154	3.28e-11	60.5
MsaG019889	AT5G24470.1	27.820	133	85	2	9	140	50	172	5.42e-11	60.1

Find 25 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGGTATGTCTTTAAAAGATT+TGG	0.160260	4:-39821741	None:intergenic
CTGATTGTTGAACTGGTTTC+AGG	0.173333	4:-39821979	None:intergenic
AGAGACTCAGTTCCATGTTT+TGG	0.251951	4:+39820863	MsaT019889.1:CDS
AGTAAGGCTTTAAAATTTCT+TGG	0.266953	4:+39821148	MsaT019889.1:CDS
TCTCACCTGCTAATCCTTGA+TGG	0.304860	4:-39821791	None:intergenic
GGCTTTAAAATTTCTTGGTT+TGG	0.308229	4:+39821153	MsaT019889.1:CDS
TTTACATCTGATTGTTGAAC+TGG	0.343425	4:-39821986	None:intergenic
TCTTGGTTTGGTTGAGGATG+TGG	0.414547	4:+39821165	MsaT019889.1:CDS
TTTGATGAAATCAAGAGTTA+AGG	0.416978	4:+39822024	MsaT019889.1:CDS
TACAATGGACTCTGCTAGTA+AGG	0.427203	4:+39821132	MsaT019889.1:CDS
TATTGTATGCCAGGGATGAC+TGG	0.449232	4:+39821331	MsaT019889.1:CDS
AAAATTTCTTGGTTTGGTTG+AGG	0.449963	4:+39821159	MsaT019889.1:CDS
ACTCTTGATTTCATCAAATG+AGG	0.455768	4:-39822019	None:intergenic
ATAACAGATTATTGTATGCC+AGG	0.463952	4:+39821322	MsaT019889.1:CDS
ATGTTCCATCAAGGATTAGC+AGG	0.504757	4:+39821786	MsaT019889.1:CDS
TTGATAGAATGTTGATTGAG+AGG	0.516155	4:+39820904	MsaT019889.1:CDS
GATGTGGCTTCAGAAGTTCA+TGG	0.523538	4:+39821181	MsaT019889.1:CDS
ATGTGGCTTCAGAAGTTCAT+GGG	0.534908	4:+39821182	MsaT019889.1:CDS
CTTCAGAGAATGTTCCATCA+AGG	0.539392	4:+39821777	MsaT019889.1:CDS
AGATCATAGCCAGTCATCCC+TGG	0.546401	4:-39821340	None:intergenic
TCTGAAGACATAATCACAAT+CGG	0.548679	4:-39821761	None:intergenic
TAACAGATTATTGTATGCCA+GGG	0.564090	4:+39821323	MsaT019889.1:CDS
TATCATCAACAGCCAAAACA+TGG	0.580138	4:-39820875	None:intergenic
TGAAATGATAGTTACTACAA+TGG	0.624009	4:+39821117	MsaT019889.1:intron
TGTGGCTTCAGAAGTTCATG+GGG	0.695893	4:+39821183	MsaT019889.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	39820849	39822078	39820849	ID=MsaG019889
Chr4	mRNA	39820849	39822078	39820849	ID=MsaT019889.1;Parent=MsaG019889
Chr4	exon	39820849	39820951	39820849	ID=MsaT019889.1.exon1;Parent=MsaT019889.1
Chr4	CDS	39820849	39820951	39820849	ID=cds.MsaT019889.1;Parent=MsaT019889.1
Chr4	exon	39821128	39821204	39821128	ID=MsaT019889.1.exon2;Parent=MsaT019889.1
Chr4	CDS	39821128	39821204	39821128	ID=cds.MsaT019889.1;Parent=MsaT019889.1
Chr4	exon	39821301	39821378	39821301	ID=MsaT019889.1.exon3;Parent=MsaT019889.1
Chr4	CDS	39821301	39821378	39821301	ID=cds.MsaT019889.1;Parent=MsaT019889.1
Chr4	exon	39821737	39821807	39821737	ID=MsaT019889.1.exon4;Parent=MsaT019889.1
Chr4	CDS	39821737	39821807	39821737	ID=cds.MsaT019889.1;Parent=MsaT019889.1
Chr4	exon	39821949	39822078	39821949	ID=MsaT019889.1.exon5;Parent=MsaT019889.1
Chr4	CDS	39821949	39822078	39821949	ID=cds.MsaT019889.1;Parent=MsaT019889.1

Gene Sequence

>MsaT019889.1

ATGGGTATGGCTGCAGAGACTCAGTTCCATGTTTTGGCTGTTGATGATAGTATTATTGATAGAATGTTGATTGAGAGGCTCCTCAAAACTTCTTCTTTTCATGTTACTACAATGGACTCTGCTAGTAAGGCTTTAAAATTTCTTGGTTTGGTTGAGGATGTGGCTTCAGAAGTTCATGGGGATGTAGATGTAAATCTGATCATAACAGATTATTGTATGCCAGGGATGACTGGCTATGATCTGCTCAGAAAAATCAAGGAATCCAAATCTTTTAAAGACATACCGATTGTGATTATGTCTTCAGAGAATGTTCCATCAAGGATTAGCAGATGTTTTGAAGAGGGAGCTGAAGAATTCTTCCTGAAACCAGTTCAACAATCAGATGTAAACAAGCTGAAGCCTCATTTGATGAAATCAAGAGTTAAGGAAGAGCAAGAACAAACAACCCATCAACAATAA

Protein sequence

>MsaT019889.1

MGMAAETQFHVLAVDDSIIDRMLIERLLKTSSFHVTTMDSASKALKFLGLVEDVASEVHGDVDVNLIITDYCMPGMTGYDLLRKIKESKSFKDIPIVIMSSENVPSRISRCFEEGAEEFFLKPVQQSDVNKLKPHLMKSRVKEEQEQTTHQQ*