Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG019917 | XP_024641248.2 | 74.625 | 733 | 177 | 2 | 103 | 826 | 18 | 750 | 0.0 | 1144 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG019917 | sp|Q9SY66|FRS11_ARATH | 45.266 | 676 | 345 | 7 | 96 | 759 | 17 | 679 | 0.0 | 602 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG019917 | tr|A0A396JX52|A0A396JX52_MEDTR | 74.625 | 733 | 177 | 2 | 103 | 826 | 18 | 750 | 0.0 | 1144 |
Gene ID | Type | Classification |
---|---|---|
MsaG019917 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG019917 | MsaG046419 | 0.802141 | 1.084089e-48 | 1.538504e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG019917 | MtrunA17_Chr1g0198761 | 74.625 | 733 | 177 | 2 | 103 | 826 | 18 | 750 | 0.0 | 1144 |
MsaG019917 | MtrunA17_Chr5g0431001 | 77.605 | 451 | 93 | 1 | 103 | 545 | 33 | 483 | 0.0 | 724 |
MsaG019917 | MtrunA17_Chr2g0276841 | 47.520 | 625 | 309 | 5 | 130 | 743 | 69 | 685 | 0.0 | 610 |
MsaG019917 | MtrunA17_Chr2g0294841 | 40.548 | 730 | 394 | 6 | 111 | 809 | 25 | 745 | 0.0 | 566 |
MsaG019917 | MtrunA17_Chr2g0290391 | 44.582 | 646 | 315 | 9 | 127 | 745 | 47 | 676 | 0.0 | 548 |
MsaG019917 | MtrunA17_Chr5g0448761 | 30.574 | 592 | 375 | 10 | 129 | 696 | 58 | 637 | 4.34e-78 | 268 |
MsaG019917 | MtrunA17_Chr1g0202341 | 28.872 | 665 | 426 | 14 | 96 | 737 | 20 | 660 | 2.96e-77 | 264 |
MsaG019917 | MtrunA17_Chr3g0080351 | 29.674 | 583 | 356 | 13 | 129 | 689 | 74 | 624 | 2.17e-74 | 259 |
MsaG019917 | MtrunA17_Chr2g0329031 | 27.458 | 590 | 386 | 10 | 102 | 683 | 1 | 556 | 1.48e-69 | 244 |
MsaG019917 | MtrunA17_Chr5g0441581 | 27.672 | 683 | 426 | 20 | 131 | 781 | 32 | 678 | 1.29e-67 | 238 |
MsaG019917 | MtrunA17_Chr6g0458391 | 27.797 | 572 | 383 | 11 | 124 | 689 | 219 | 766 | 1.47e-67 | 239 |
MsaG019917 | MtrunA17_Chr1g0207551 | 28.993 | 576 | 373 | 11 | 131 | 689 | 34 | 590 | 5.81e-65 | 232 |
MsaG019917 | MtrunA17_Chr3g0082121 | 28.622 | 566 | 382 | 13 | 130 | 689 | 42 | 591 | 1.69e-64 | 229 |
MsaG019917 | MtrunA17_Chr2g0296781 | 27.713 | 682 | 434 | 22 | 137 | 786 | 3 | 657 | 3.29e-64 | 229 |
MsaG019917 | MtrunA17_Chr2g0287651 | 26.638 | 702 | 452 | 18 | 137 | 811 | 81 | 746 | 6.60e-64 | 230 |
MsaG019917 | MtrunA17_Chr8g0363841 | 28.227 | 581 | 370 | 13 | 132 | 687 | 18 | 576 | 2.66e-63 | 225 |
MsaG019917 | MtrunA17_Chr5g0440451 | 25.181 | 691 | 427 | 15 | 124 | 763 | 34 | 685 | 5.81e-63 | 228 |
MsaG019917 | MtrunA17_Chr1g0203051 | 26.508 | 547 | 374 | 9 | 143 | 676 | 91 | 622 | 2.83e-61 | 219 |
MsaG019917 | MtrunA17_Chr5g0448511 | 32.540 | 378 | 249 | 3 | 311 | 683 | 16 | 392 | 1.11e-57 | 206 |
MsaG019917 | MtrunA17_Chr6g0477261 | 30.584 | 497 | 311 | 15 | 307 | 780 | 55 | 540 | 1.39e-57 | 209 |
MsaG019917 | MtrunA17_Chr2g0287061 | 27.487 | 593 | 368 | 17 | 110 | 691 | 165 | 706 | 7.25e-57 | 209 |
MsaG019917 | MtrunA17_Chr1g0203721 | 26.109 | 586 | 376 | 14 | 134 | 689 | 66 | 624 | 1.17e-56 | 209 |
MsaG019917 | MtrunA17_Chr3g0118611 | 27.439 | 492 | 328 | 11 | 289 | 766 | 104 | 580 | 4.61e-51 | 192 |
MsaG019917 | MtrunA17_Chr1g0196541 | 25.412 | 728 | 454 | 22 | 137 | 820 | 3 | 685 | 3.37e-50 | 189 |
MsaG019917 | MtrunA17_Chr2g0324011 | 25.217 | 575 | 395 | 12 | 131 | 687 | 10 | 567 | 7.91e-48 | 179 |
MsaG019917 | MtrunA17_Chr3g0081281 | 88.172 | 93 | 3 | 1 | 279 | 363 | 1 | 93 | 8.02e-48 | 164 |
MsaG019917 | MtrunA17_Chr2g0291581 | 23.364 | 642 | 442 | 16 | 131 | 747 | 71 | 687 | 1.30e-47 | 180 |
MsaG019917 | MtrunA17_Chr5g0430921 | 82.353 | 85 | 15 | 0 | 742 | 826 | 1 | 85 | 2.63e-45 | 157 |
MsaG019917 | MtrunA17_Chr2g0291591 | 22.820 | 539 | 359 | 12 | 127 | 640 | 60 | 566 | 7.85e-36 | 143 |
MsaG019917 | MtrunA17_Chr1g0164591 | 34.314 | 204 | 132 | 2 | 324 | 526 | 106 | 308 | 1.59e-35 | 137 |
MsaG019917 | MtrunA17_Chr4g0064601 | 88.136 | 59 | 7 | 0 | 40 | 98 | 55 | 113 | 2.79e-23 | 100 |
MsaG019917 | MtrunA17_Chr2g0308841 | 25.837 | 209 | 150 | 2 | 480 | 683 | 14 | 222 | 6.62e-17 | 81.6 |
MsaG019917 | MtrunA17_Chr1g0171741 | 32.331 | 133 | 77 | 6 | 125 | 254 | 125 | 247 | 2.42e-12 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG019917 | AT1G10240.2 | 45.266 | 676 | 345 | 7 | 96 | 759 | 17 | 679 | 0.0 | 602 |
MsaG019917 | AT1G10240.1 | 45.266 | 676 | 345 | 7 | 96 | 759 | 17 | 679 | 0.0 | 602 |
MsaG019917 | AT5G28530.3 | 41.718 | 652 | 348 | 8 | 108 | 740 | 32 | 670 | 3.75e-172 | 513 |
MsaG019917 | AT5G28530.2 | 41.718 | 652 | 348 | 8 | 108 | 740 | 32 | 670 | 3.75e-172 | 513 |
MsaG019917 | AT5G28530.1 | 41.564 | 652 | 353 | 8 | 108 | 740 | 32 | 674 | 1.84e-171 | 511 |
MsaG019917 | AT5G28530.5 | 38.170 | 634 | 333 | 8 | 108 | 740 | 32 | 607 | 1.74e-142 | 434 |
MsaG019917 | AT5G28530.4 | 38.013 | 634 | 338 | 8 | 108 | 740 | 32 | 611 | 1.15e-141 | 432 |
MsaG019917 | AT4G38180.1 | 30.637 | 581 | 371 | 9 | 129 | 690 | 71 | 638 | 2.88e-78 | 270 |
MsaG019917 | AT4G15090.1 | 27.221 | 698 | 457 | 15 | 125 | 789 | 36 | 715 | 6.60e-73 | 255 |
MsaG019917 | AT4G15090.5 | 27.221 | 698 | 457 | 15 | 125 | 789 | 36 | 715 | 6.60e-73 | 255 |
MsaG019917 | AT4G15090.3 | 27.221 | 698 | 457 | 15 | 125 | 789 | 36 | 715 | 6.60e-73 | 255 |
MsaG019917 | AT4G15090.2 | 27.221 | 698 | 457 | 15 | 125 | 789 | 36 | 715 | 6.60e-73 | 255 |
MsaG019917 | AT4G15090.4 | 27.221 | 698 | 457 | 15 | 125 | 789 | 36 | 715 | 6.60e-73 | 255 |
MsaG019917 | AT3G22170.2 | 26.544 | 599 | 392 | 14 | 108 | 687 | 48 | 617 | 5.20e-67 | 239 |
MsaG019917 | AT3G22170.1 | 26.544 | 599 | 392 | 14 | 108 | 687 | 48 | 617 | 5.20e-67 | 239 |
MsaG019917 | AT1G76320.3 | 27.076 | 554 | 380 | 8 | 137 | 683 | 3 | 539 | 5.55e-64 | 227 |
MsaG019917 | AT1G76320.1 | 27.076 | 554 | 380 | 8 | 137 | 683 | 3 | 539 | 7.82e-64 | 228 |
MsaG019917 | AT1G76320.4 | 27.076 | 554 | 380 | 8 | 137 | 683 | 3 | 539 | 7.82e-64 | 228 |
MsaG019917 | AT1G76320.2 | 27.076 | 554 | 380 | 8 | 137 | 683 | 3 | 539 | 1.06e-63 | 228 |
MsaG019917 | AT2G27110.2 | 26.368 | 603 | 395 | 15 | 131 | 723 | 49 | 612 | 2.42e-55 | 206 |
MsaG019917 | AT2G27110.1 | 26.368 | 603 | 395 | 15 | 131 | 723 | 49 | 612 | 2.42e-55 | 206 |
MsaG019917 | AT3G06250.2 | 25.627 | 558 | 362 | 11 | 131 | 683 | 190 | 699 | 1.42e-53 | 199 |
MsaG019917 | AT3G06250.1 | 25.627 | 558 | 362 | 11 | 131 | 683 | 190 | 699 | 1.42e-53 | 199 |
MsaG019917 | AT3G06250.3 | 25.627 | 558 | 362 | 11 | 131 | 683 | 190 | 699 | 1.42e-53 | 199 |
MsaG019917 | AT2G27110.3 | 28.341 | 434 | 293 | 9 | 298 | 723 | 44 | 467 | 3.32e-50 | 189 |
MsaG019917 | AT5G18960.2 | 25.841 | 565 | 365 | 13 | 126 | 683 | 206 | 723 | 1.11e-49 | 188 |
MsaG019917 | AT5G18960.1 | 25.841 | 565 | 365 | 13 | 126 | 683 | 206 | 723 | 1.11e-49 | 188 |
MsaG019917 | AT4G19990.3 | 26.421 | 598 | 375 | 14 | 133 | 708 | 23 | 577 | 3.07e-48 | 183 |
MsaG019917 | AT4G19990.4 | 26.421 | 598 | 375 | 14 | 133 | 708 | 23 | 577 | 3.07e-48 | 183 |
MsaG019917 | AT4G19990.5 | 26.421 | 598 | 375 | 14 | 133 | 708 | 23 | 577 | 3.80e-48 | 183 |
MsaG019917 | AT4G19990.7 | 26.421 | 598 | 375 | 14 | 133 | 708 | 37 | 591 | 4.43e-48 | 183 |
MsaG019917 | AT4G19990.6 | 26.421 | 598 | 375 | 14 | 133 | 708 | 23 | 577 | 6.51e-48 | 183 |
MsaG019917 | AT4G19990.2 | 26.421 | 598 | 375 | 14 | 133 | 708 | 23 | 577 | 6.51e-48 | 183 |
MsaG019917 | AT2G32250.5 | 24.064 | 561 | 372 | 11 | 134 | 688 | 41 | 553 | 3.39e-47 | 181 |
MsaG019917 | AT2G32250.6 | 24.064 | 561 | 372 | 11 | 134 | 688 | 41 | 553 | 7.00e-47 | 180 |
MsaG019917 | AT2G32250.1 | 24.064 | 561 | 372 | 11 | 134 | 688 | 41 | 553 | 7.00e-47 | 180 |
MsaG019917 | AT2G32250.3 | 24.064 | 561 | 372 | 11 | 134 | 688 | 41 | 553 | 7.00e-47 | 180 |
MsaG019917 | AT2G32250.2 | 24.064 | 561 | 372 | 11 | 134 | 688 | 41 | 553 | 7.03e-47 | 180 |
MsaG019917 | AT2G32250.4 | 24.064 | 561 | 372 | 11 | 134 | 688 | 41 | 553 | 7.03e-47 | 180 |
MsaG019917 | AT1G80010.1 | 24.916 | 598 | 374 | 20 | 131 | 686 | 95 | 659 | 1.10e-46 | 179 |
MsaG019917 | AT2G32250.8 | 24.014 | 558 | 370 | 11 | 137 | 688 | 3 | 512 | 1.47e-46 | 179 |
MsaG019917 | AT2G32250.7 | 24.014 | 558 | 370 | 11 | 137 | 688 | 3 | 512 | 1.89e-46 | 178 |
MsaG019917 | AT4G19990.1 | 26.594 | 549 | 344 | 12 | 182 | 708 | 9 | 520 | 3.38e-45 | 174 |
MsaG019917 | AT4G38170.1 | 28.846 | 364 | 249 | 5 | 332 | 689 | 41 | 400 | 3.99e-45 | 171 |
MsaG019917 | AT1G52520.1 | 25.000 | 580 | 385 | 19 | 130 | 686 | 84 | 636 | 7.54e-44 | 170 |
MsaG019917 | AT2G34460.1 | 69.091 | 55 | 17 | 0 | 44 | 98 | 47 | 101 | 1.66e-15 | 78.2 |
Find 120 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCACATATTCTTGAGTTTC+TGG | 0.087082 | 4:-40986181 | None:intergenic |
GCAATCCAAACTTACTTATT+AGG | 0.125684 | 4:-40986424 | None:intergenic |
ACATCACAAACATCGTTATT+TGG | 0.152623 | 4:-40986223 | None:intergenic |
ACCCATCCGGTCTTTATAAA+AGG | 0.176532 | 4:+40983279 | MsaT019917.1:CDS |
ATGATATGCCACTTGGAATA+TGG | 0.191467 | 4:+40983864 | MsaT019917.1:CDS |
CAACTCTGGGATTGAATAAA+AGG | 0.228037 | 4:-40983638 | None:intergenic |
TTCCTTTGCGTGGGCTTTAA+AGG | 0.228847 | 4:+40983955 | MsaT019917.1:CDS |
CAATCCAAACTTACTTATTA+GGG | 0.237365 | 4:-40986423 | None:intergenic |
ATTCGAGCATACGAATCTTT+TGG | 0.279666 | 4:+40983800 | MsaT019917.1:CDS |
CTCATGTTGGAGCAACTTAA+AGG | 0.285515 | 4:-40985747 | None:intergenic |
TCATCACAATCATGAGTTAT+TGG | 0.289585 | 4:+40983466 | MsaT019917.1:CDS |
GTTGACAACATGGCTAGATT+TGG | 0.303109 | 4:-40986026 | None:intergenic |
TATTGATGAATGTAACAAAT+TGG | 0.311506 | 4:+40983748 | MsaT019917.1:CDS |
GCAGCTTCAACTCCTCCTTT+TGG | 0.319527 | 4:-40986295 | None:intergenic |
TTGACAACATGGCTAGATTT+GGG | 0.328523 | 4:-40986025 | None:intergenic |
TCAATCTCTGATTCGATGTT+TGG | 0.328733 | 4:+40986075 | MsaT019917.1:CDS |
TCAAGAATATGTGATTGATT+TGG | 0.332734 | 4:+40986189 | MsaT019917.1:CDS |
TGATCCTCTTGGCCGACATT+TGG | 0.336140 | 4:-40986269 | None:intergenic |
TTGGTGTTGCTGTCAAAATT+AGG | 0.355142 | 4:+40985618 | MsaT019917.1:CDS |
ACTTAAGGAAGCCATTAAAA+TGG | 0.358796 | 4:+40984133 | MsaT019917.1:CDS |
AAAGTCATTCAAGATATAAA+AGG | 0.358979 | 4:+40986154 | MsaT019917.1:CDS |
AAAATCTGTCAAACTTGTAT+TGG | 0.376571 | 4:-40984483 | None:intergenic |
CCTCATGTCAGTAACATTGA+TGG | 0.379564 | 4:+40983119 | MsaT019917.1:CDS |
ATTCAATCCCAGAGTTGTAT+TGG | 0.389914 | 4:+40983644 | MsaT019917.1:CDS |
CAAAATGCATGCTTTGTGTT+TGG | 0.392144 | 4:-40984161 | None:intergenic |
AGATCAAGATCCCGCACTTA+AGG | 0.392664 | 4:+40984118 | MsaT019917.1:CDS |
AATAGTGAATTCATATTTGA+AGG | 0.396961 | 4:-40983729 | None:intergenic |
GATGCAGCATGTTCCTCAAT+AGG | 0.398909 | 4:-40985707 | None:intergenic |
CTAAATATTTGCCCTTCAAA+AGG | 0.402295 | 4:-40983149 | None:intergenic |
TTTCTTTACCAATACAACTC+TGG | 0.409477 | 4:-40983652 | None:intergenic |
TTTGCTGGGATGACAACAAC+AGG | 0.410409 | 4:+40984416 | MsaT019917.1:CDS |
TGGAAAAGAGCAAGTCAATA+TGG | 0.415923 | 4:-40984352 | None:intergenic |
CGTTAGTCAACTTCTTCAAC+CGG | 0.417944 | 4:+40981725 | MsaT019917.1:CDS |
GAGCATATTATGTGGGCATT+TGG | 0.419517 | 4:+40983770 | MsaT019917.1:CDS |
ATTTGACTTCCTTTGACAAC+CGG | 0.429905 | 4:-40981744 | None:intergenic |
CTTTCTTCTTCAAACTCAAA+GGG | 0.431563 | 4:-40982372 | None:intergenic |
TGATATGCCACTTGGAATAT+GGG | 0.434301 | 4:+40983865 | MsaT019917.1:CDS |
TTCTTTACCAATACAACTCT+GGG | 0.436134 | 4:-40983651 | None:intergenic |
AACCAGCTTTCGACAACAAT+AGG | 0.437905 | 4:-40983553 | None:intergenic |
CTTTCTTGTCTCCATCGAAA+AGG | 0.441125 | 4:-40985992 | None:intergenic |
GGAAAACATGTTCTGATATG+AGG | 0.442250 | 4:-40985686 | None:intergenic |
TGATTAGTTCCACCACATCT+TGG | 0.444476 | 4:-40986343 | None:intergenic |
AATCTTACAAATTGAAGAGA+TGG | 0.450016 | 4:-40982520 | None:intergenic |
TTGGGCATTAGCTTATTTGA+AGG | 0.451954 | 4:+40984385 | MsaT019917.1:CDS |
CCCATCCGGTCTTTATAAAA+GGG | 0.452968 | 4:+40983280 | MsaT019917.1:CDS |
ATCCTATTGTTGTCGAAAGC+TGG | 0.455314 | 4:+40983551 | MsaT019917.1:CDS |
ACATGCTATTCGTGTGCTAA+TGG | 0.455837 | 4:+40985934 | MsaT019917.1:CDS |
CGAAAGAGAGTGGAAATCAA+TGG | 0.466880 | 4:+40984301 | MsaT019917.1:CDS |
GGGCAAATATTTAGTAATGA+TGG | 0.472481 | 4:+40983158 | MsaT019917.1:CDS |
CGTGGAACTGTTACTTGCAA+AGG | 0.483478 | 4:+40982435 | MsaT019917.1:CDS |
TTTCTTGTCTCCATCGAAAA+GGG | 0.485154 | 4:-40985991 | None:intergenic |
GTTGGAATGTTGCGATAAGC+AGG | 0.492886 | 4:-40983512 | None:intergenic |
TAAAGCTGGGGCTAGAGACT+TGG | 0.493337 | 4:+40982468 | MsaT019917.1:CDS |
ACTTTCTTCTTCAAACTCAA+AGG | 0.501552 | 4:-40982373 | None:intergenic |
GTGGAACTGTTACTTGCAAA+GGG | 0.502708 | 4:+40982436 | MsaT019917.1:CDS |
TACAAATTGAAGAGATGGGT+TGG | 0.506542 | 4:-40982515 | None:intergenic |
CATCTCTGAGGATAAGCATA+TGG | 0.508315 | 4:+40981776 | MsaT019917.1:CDS |
GGTTGAAGAAGTTGACTAAC+GGG | 0.509861 | 4:-40981723 | None:intergenic |
CCAAGAGGATCAAGACCAAA+AGG | 0.514192 | 4:+40986280 | MsaT019917.1:CDS |
TGGAGCAACTTAAAGGCATA+TGG | 0.514224 | 4:-40985740 | None:intergenic |
TGTCAGTAACATTGATGGGT+TGG | 0.515305 | 4:+40983124 | MsaT019917.1:CDS |
GTCAAAATTAGGAATCAAGC+TGG | 0.516805 | 4:+40985629 | MsaT019917.1:CDS |
CTTCTTCAACCGGTTGTCAA+AGG | 0.519226 | 4:+40981735 | MsaT019917.1:CDS |
GCTGGAGCTACTGGTAGCAC+TGG | 0.522391 | 4:+40982403 | MsaT019917.1:CDS |
TAGATAACTCAATCTCATGT+TGG | 0.522807 | 4:-40985760 | None:intergenic |
ACGGTGGGCGTCAAGTAAGT+TGG | 0.528714 | 4:+40985846 | MsaT019917.1:CDS |
TTGTGGCAAAGTTGTCAAGT+TGG | 0.535071 | 4:+40984195 | MsaT019917.1:CDS |
ACAAATTGGAGCATATTATG+TGG | 0.539309 | 4:+40983762 | MsaT019917.1:CDS |
ATCTTACAAATTGAAGAGAT+GGG | 0.541750 | 4:-40982519 | None:intergenic |
CGCTGTCATGTTCCAAGATG+TGG | 0.548589 | 4:+40986331 | MsaT019917.1:CDS |
AGAAGATTTCTTCCTTTGCG+TGG | 0.551128 | 4:+40983945 | MsaT019917.1:CDS |
TTGTTACAAAATCCAAATGT+CGG | 0.554152 | 4:+40986257 | MsaT019917.1:CDS |
GAAGATTTCTTCCTTTGCGT+GGG | 0.554338 | 4:+40983946 | MsaT019917.1:CDS |
ATACGACTTTGATCAGCAGT+TGG | 0.558928 | 4:-40983530 | None:intergenic |
AATCGTTATGATATGCCACT+TGG | 0.563602 | 4:+40983857 | MsaT019917.1:CDS |
TTAATGGCTTCCTTAAGTGC+GGG | 0.567307 | 4:-40984128 | None:intergenic |
CTCATGTCAGTAACATTGAT+GGG | 0.568274 | 4:+40983120 | MsaT019917.1:CDS |
AGGGAATTTGTTTGTCATCG+TGG | 0.571012 | 4:+40983299 | MsaT019917.1:CDS |
CTCTGAGGATAAGCATATGG+TGG | 0.574310 | 4:+40981779 | MsaT019917.1:CDS |
TTTAATGGCTTCCTTAAGTG+CGG | 0.575636 | 4:-40984129 | None:intergenic |
CAACATCATACAAAAGTTGA+CGG | 0.577068 | 4:+40985827 | MsaT019917.1:CDS |
TAATGCCCAAAATTCACGAT+TGG | 0.579684 | 4:-40984372 | None:intergenic |
TAGGAATCAAGCTGGAGAAG+AGG | 0.579829 | 4:+40985637 | MsaT019917.1:CDS |
CGGATGATTTCGAAAGAGAG+TGG | 0.582752 | 4:+40984291 | MsaT019917.1:CDS |
ATCATACAAAAGTTGACGGT+GGG | 0.583166 | 4:+40985831 | MsaT019917.1:CDS |
ACAACGCAACATTAACGAAG+TGG | 0.585119 | 4:+40983334 | MsaT019917.1:CDS |
AAATCTTCAAAATGTAATTG+TGG | 0.587616 | 4:+40983374 | MsaT019917.1:CDS |
CAAATTGGAGCATATTATGT+GGG | 0.593912 | 4:+40983763 | MsaT019917.1:CDS |
AATCCAAACTTACTTATTAG+GGG | 0.596179 | 4:-40986422 | None:intergenic |
TAGCATTGCAGTTGACAACA+TGG | 0.598963 | 4:-40986036 | None:intergenic |
TAATTGTGGTGCAAAGATGT+TGG | 0.600117 | 4:+40983388 | MsaT019917.1:CDS |
CTGGAGCTACTGGTAGCACT+GGG | 0.600433 | 4:+40982404 | MsaT019917.1:CDS |
TCTGAGGATAAGCATATGGT+GGG | 0.603062 | 4:+40981780 | MsaT019917.1:CDS |
CAGAGATTGAAACTTAGTAG+AGG | 0.604303 | 4:-40986062 | None:intergenic |
CGGTTGAAGAAGTTGACTAA+CGG | 0.605044 | 4:-40981724 | None:intergenic |
TCTTCTTCAAACTCAAAGGG+AGG | 0.608853 | 4:-40982369 | None:intergenic |
TGGGTTGGTGTTGATAATCA+CGG | 0.609843 | 4:+40983884 | MsaT019917.1:CDS |
TACTTATTAGGGGATTGAGA+AGG | 0.610633 | 4:-40986412 | None:intergenic |
TGCACAATTTGATTTGTGCA+AGG | 0.611924 | 4:+40984325 | MsaT019917.1:CDS |
TACCTTTAAAGCCCACGCAA+AGG | 0.613106 | 4:-40983957 | None:intergenic |
CATATGCTTATCCTCAGAGA+TGG | 0.617431 | 4:-40981775 | None:intergenic |
GGTGTATCATTTAGAATGTG+CGG | 0.618416 | 4:+40984271 | MsaT019917.1:CDS |
CTTTAAACAAGAGTTTCACA+AGG | 0.629391 | 4:+40984250 | MsaT019917.1:CDS |
TGACAACATGGCTAGATTTG+GGG | 0.633749 | 4:-40986024 | None:intergenic |
GAATTTGTTTGTCATCGTGG+TGG | 0.635704 | 4:+40983302 | MsaT019917.1:CDS |
AAATCCAAATGTCGGCCAAG+AGG | 0.644201 | 4:+40986265 | MsaT019917.1:CDS |
AGAGAACGAGTTGCTACTAG+AGG | 0.645909 | 4:+40986124 | MsaT019917.1:CDS |
ATGCCACTTGGAATATGGGT+TGG | 0.648688 | 4:+40983869 | MsaT019917.1:CDS |
CCATCAATGTTACTGACATG+AGG | 0.654897 | 4:-40983119 | None:intergenic |
GAGGAGTTGAAGCTGCAAAG+AGG | 0.660327 | 4:+40986302 | MsaT019917.1:CDS |
ATAACGATTTATTCTATACG+TGG | 0.666476 | 4:-40983843 | None:intergenic |
AATTGATATCGCCATCTCTG+AGG | 0.667847 | 4:+40981764 | MsaT019917.1:CDS |
TAGCACTGGGAAAAGAATCG+TGG | 0.673596 | 4:+40982417 | MsaT019917.1:CDS |
AGAGGATCAAGACCAAAAGG+AGG | 0.673931 | 4:+40986283 | MsaT019917.1:CDS |
CATCATACAAAAGTTGACGG+TGG | 0.678338 | 4:+40985830 | MsaT019917.1:CDS |
ACACCAACCCATATTCCAAG+TGG | 0.679959 | 4:-40983872 | None:intergenic |
TGTCATGTTCCAAGATGTGG+TGG | 0.694717 | 4:+40986334 | MsaT019917.1:CDS |
GCAGCAACTGAAATTCACAA+TGG | 0.700877 | 4:+40985791 | MsaT019917.1:CDS |
CTTGGAACATGACAGCGACG+AGG | 0.719993 | 4:-40986325 | None:intergenic |
TTGCTGGGATGACAACAACA+GGG | 0.722836 | 4:+40984417 | MsaT019917.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 40981709 | 40986435 | 40981709 | ID=MsaG019917 |
Chr4 | mRNA | 40981709 | 40986435 | 40981709 | ID=MsaT019917.1;Parent=MsaG019917 |
Chr4 | exon | 40981709 | 40981813 | 40981709 | ID=MsaT019917.1.exon1;Parent=MsaT019917.1 |
Chr4 | CDS | 40981709 | 40981813 | 40981709 | ID=cds.MsaT019917.1;Parent=MsaT019917.1 |
Chr4 | exon | 40982364 | 40982534 | 40982364 | ID=MsaT019917.1.exon2;Parent=MsaT019917.1 |
Chr4 | CDS | 40982364 | 40982534 | 40982364 | ID=cds.MsaT019917.1;Parent=MsaT019917.1 |
Chr4 | exon | 40983035 | 40983976 | 40983035 | ID=MsaT019917.1.exon3;Parent=MsaT019917.1 |
Chr4 | CDS | 40983035 | 40983976 | 40983035 | ID=cds.MsaT019917.1;Parent=MsaT019917.1 |
Chr4 | exon | 40984071 | 40984514 | 40984071 | ID=MsaT019917.1.exon4;Parent=MsaT019917.1 |
Chr4 | CDS | 40984071 | 40984514 | 40984071 | ID=cds.MsaT019917.1;Parent=MsaT019917.1 |
Chr4 | exon | 40985617 | 40986435 | 40985617 | ID=MsaT019917.1.exon5;Parent=MsaT019917.1 |
Chr4 | CDS | 40985617 | 40986435 | 40985617 | ID=cds.MsaT019917.1;Parent=MsaT019917.1 |
Gene Sequence |
Protein sequence |