AlfalfaGEDB | MsaG019917

M. sativa ssp. caerulea / MsaG019917

KEGG: -
GO: -
PFAM: PF13460.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019917	XP_024641248.2	74.625	733	177	2	103	826	18	750	0.0	1144

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019917	sp\|Q9SY66\|FRS11_ARATH	45.266	676	345	7	96	759	17	679	0.0	602

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019917	tr\|A0A396JX52\|A0A396JX52_MEDTR	74.625	733	177	2	103	826	18	750	0.0	1144

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TFs/TRs:

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Gene ID	Type	Classification
MsaG019917	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG019917	MsaG046419	0.802141	1.084089e-48	1.538504e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019917	MtrunA17_Chr1g0198761	74.625	733	177	2	103	826	18	750	0.0	1144
MsaG019917	MtrunA17_Chr5g0431001	77.605	451	93	1	103	545	33	483	0.0	724
MsaG019917	MtrunA17_Chr2g0276841	47.520	625	309	5	130	743	69	685	0.0	610
MsaG019917	MtrunA17_Chr2g0294841	40.548	730	394	6	111	809	25	745	0.0	566
MsaG019917	MtrunA17_Chr2g0290391	44.582	646	315	9	127	745	47	676	0.0	548
MsaG019917	MtrunA17_Chr5g0448761	30.574	592	375	10	129	696	58	637	4.34e-78	268
MsaG019917	MtrunA17_Chr1g0202341	28.872	665	426	14	96	737	20	660	2.96e-77	264
MsaG019917	MtrunA17_Chr3g0080351	29.674	583	356	13	129	689	74	624	2.17e-74	259
MsaG019917	MtrunA17_Chr2g0329031	27.458	590	386	10	102	683	1	556	1.48e-69	244
MsaG019917	MtrunA17_Chr5g0441581	27.672	683	426	20	131	781	32	678	1.29e-67	238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG019917	AT1G10240.2	45.266	676	345	7	96	759	17	679	0.0	602
MsaG019917	AT1G10240.1	45.266	676	345	7	96	759	17	679	0.0	602
MsaG019917	AT5G28530.3	41.718	652	348	8	108	740	32	670	3.75e-172	513
MsaG019917	AT5G28530.2	41.718	652	348	8	108	740	32	670	3.75e-172	513
MsaG019917	AT5G28530.1	41.564	652	353	8	108	740	32	674	1.84e-171	511
MsaG019917	AT5G28530.5	38.170	634	333	8	108	740	32	607	1.74e-142	434
MsaG019917	AT5G28530.4	38.013	634	338	8	108	740	32	611	1.15e-141	432
MsaG019917	AT4G38180.1	30.637	581	371	9	129	690	71	638	2.88e-78	270
MsaG019917	AT4G15090.1	27.221	698	457	15	125	789	36	715	6.60e-73	255
MsaG019917	AT4G15090.5	27.221	698	457	15	125	789	36	715	6.60e-73	255

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Find 120 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGTCAAACTTGTAT+TGG	0.376571	4:-40984483	None:intergenic
AAAGTCATTCAAGATATAAA+AGG	0.358979	4:+40986154	MsaT019917.1:CDS
AAATCCAAATGTCGGCCAAG+AGG	0.644201	4:+40986265	MsaT019917.1:CDS
AAATCTTCAAAATGTAATTG+TGG	0.587616	4:+40983374	MsaT019917.1:CDS
AACCAGCTTTCGACAACAAT+AGG	0.437905	4:-40983553	None:intergenic
AATAGTGAATTCATATTTGA+AGG	0.396961	4:-40983729	None:intergenic
AATCCAAACTTACTTATTAG+GGG	0.596179	4:-40986422	None:intergenic
AATCGTTATGATATGCCACT+TGG	0.563602	4:+40983857	MsaT019917.1:CDS
AATCTTACAAATTGAAGAGA+TGG	0.450016	4:-40982520	None:intergenic
AATTGATATCGCCATCTCTG+AGG	0.667847	4:+40981764	MsaT019917.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	40981709	40986435	40981709	ID=MsaG019917
Chr4	mRNA	40981709	40986435	40981709	ID=MsaT019917.1;Parent=MsaG019917
Chr4	exon	40981709	40981813	40981709	ID=MsaT019917.1.exon1;Parent=MsaT019917.1
Chr4	CDS	40981709	40981813	40981709	ID=cds.MsaT019917.1;Parent=MsaT019917.1
Chr4	exon	40982364	40982534	40982364	ID=MsaT019917.1.exon2;Parent=MsaT019917.1
Chr4	CDS	40982364	40982534	40982364	ID=cds.MsaT019917.1;Parent=MsaT019917.1
Chr4	exon	40983035	40983976	40983035	ID=MsaT019917.1.exon3;Parent=MsaT019917.1
Chr4	CDS	40983035	40983976	40983035	ID=cds.MsaT019917.1;Parent=MsaT019917.1
Chr4	exon	40984071	40984514	40984071	ID=MsaT019917.1.exon4;Parent=MsaT019917.1
Chr4	CDS	40984071	40984514	40984071	ID=cds.MsaT019917.1;Parent=MsaT019917.1
Chr4	exon	40985617	40986435	40985617	ID=MsaT019917.1.exon5;Parent=MsaT019917.1
Chr4	CDS	40985617	40986435	40985617	ID=cds.MsaT019917.1;Parent=MsaT019917.1

Gene Sequence

>MsaT019917.1

ATGTTTGTAACACTCCCGTTAGTCAACTTCTTCAACCGGTTGTCAAAGGAAGTCAAATTGATATCGCCATCTCTGAGGATAAGCATATGGTGGGATTTGAAACATAAGCACCTCCCTTTGAGTTTGAAGAAGAAAGTTTTTGTTGCTGGAGCTACTGGTAGCACTGGGAAAAGAATCGTGGAACTGTTACTTGCAAAGGGTTTTGCTGTTAAAGCTGGGGCTAGAGACTTGGACAAAGCAAAAACAGCACTTTCTGCCAACCCATCTCTTCAATTTGTTCTTAAAGATTATTCTTCTATATGTGTAGATGATGAATATATAAATTCATTAACATTTCAAGAGCCACAAAATGAAAATTTGCCTCATGTCAGTAACATTGATGGGTTGGTTCCTTTTGAAGGGCAAATATTTAGTAATGATGGTGATGCTTATGAATTTTATTCTTTATTTGCACGAAAAAATGGATTTTCGATCAGGCGCGAACACATTTACAAATCTTGTACAAACGAGTCTAAAAAGAACCCATCCGGTCTTTATAAAAGGGAATTTGTTTGTCATCGTGGTGGTATTGTTAAACAACGCAACATTAACGAAGTGGAATGTAAAAGAAAACGAAAATCTTCAAAATGTAATTGTGGTGCAAAGATGTTGGTTGCTATAAAAACAATTGGCTTTGAGGAAAAATGGGTGGTTACATATTTCAACAATCATCACAATCATGAGTTATTGGATGAAAAAGAGGTTCAATTTCTTCCTGCTTATCGCAACATTCCAACTGCTGATCAAAGTCGTATCCTATTGTTGTCGAAAGCTGGTTGCTCTATAAGTATTATAATGAGAGTGCTTGAGTTAGAGAAAAAAATAGTTACAGGCAATCTACCTTTTATTCAATCCCAGAGTTGTATTGGTAAAGAAAATGATGCTTCTGATGTTCTCAAATTATGCAAAAATTTGAAAGATATTGATGATGCCTTCAAATATGAATTCACTATTGATGAATGTAACAAATTGGAGCATATTATGTGGGCATTTGGTGATTCAATTCGAGCATACGAATCTTTTGGAGATGTTGTAGTTTTTGAAACCACGTATAGAATAAATCGTTATGATATGCCACTTGGAATATGGGTTGGTGTTGATAATCACGGAAATTTGATTTTCTTTGGTTGTGTTCTATTGAAGAATGAGAAGATTTCTTCCTTTGCGTGGGCTTTAAAGAACTTCCTAGCTTTTGTCCAAGGAAAATATCCAAAAACTATTCTTACAGATCAAGATCCCGCACTTAAGGAAGCCATTAAAATGGAATTGCCAAACACAAAGCATGCATTTTGCATATGGCATATTGTGGCAAAGTTGTCAAGTTGGTTTTCTTTTACATTGGGTTCAAGATATAATGACTTTAAACAAGAGTTTCACAAGGTGTATCATTTAGAATGTGCGGATGATTTCGAAAGAGAGTGGAAATCAATGGTTGCACAATTTGATTTGTGCAAGGATAACCATATTGACTTGCTCTTTTCCAATCGTGAATTTTGGGCATTAGCTTATTTGAAGGACTTTTTCTTTGCTGGGATGACAACAACAGGGCGCTCAGAATCAATAAATGCATATATAAAAAGATTCTTAGGCGCCAATACAAGTTTGACAGATTTTGTAAATCAAGTTGGTGTTGCTGTCAAAATTAGGAATCAAGCTGGAGAAGAGGCAAGAATGTGTCAAAAGTATCACAATCCTCATATCAGAACATGTTTTCCTATTGAGGAACATGCTGCATCTGTACTCACGCCATATGCCTTTAAGTTGCTCCAACATGAGATTGAGTTATCTACAAAATATGCAGCAACTGAAATTCACAATGGTTCTTATATTGTGCAACATCATACAAAAGTTGACGGTGGGCGTCAAGTAAGTTGGATAGTAGAAAAAGAGTCAATTCATTGCTCTTGTAAAGAATTTGAGTTTTCTGGAATATTATGCAGACATGCTATTCGTGTGCTAATGGTGAAAAATTATTTTAGCCTCCCTTCAAAATATCTCCCTTTTCGATGGAGACAAGAAAGTTCATTGATCCCCAAATCTAGCCATGTTGTCAACTGCAATGCTACTTCCTCTACTAAGTTTCAATCTCTGATTCGATGTTTGGAAGTTGAATCATTAAAGACAAGCGAAAGAGAACGAGTTGCTACTAGAGGATTAGAAAAAGTCATTCAAGATATAAAAGGCATGCCAGAAACTCAAGAATATGTGATTGATTTGGAACATGATGCTCCAAATAACGATGTTTGTGATGTTGAAAATCCCATTGTTACAAAATCCAAATGTCGGCCAAGAGGATCAAGACCAAAAGGAGGAGTTGAAGCTGCAAAGAGGCCTCGTCGCTGTCATGTTCCAAGATGTGGTGGAACTAATCATGACTCACGAAATTGTCCAAACAAAAAGAAAAAAATTGAAGTATTGCCTTCTCAATCCCCTAATAAGTAA

Protein sequence

>MsaT019917.1

MFVTLPLVNFFNRLSKEVKLISPSLRISIWWDLKHKHLPLSLKKKVFVAGATGSTGKRIVELLLAKGFAVKAGARDLDKAKTALSANPSLQFVLKDYSSICVDDEYINSLTFQEPQNENLPHVSNIDGLVPFEGQIFSNDGDAYEFYSLFARKNGFSIRREHIYKSCTNESKKNPSGLYKREFVCHRGGIVKQRNINEVECKRKRKSSKCNCGAKMLVAIKTIGFEEKWVVTYFNNHHNHELLDEKEVQFLPAYRNIPTADQSRILLLSKAGCSISIIMRVLELEKKIVTGNLPFIQSQSCIGKENDASDVLKLCKNLKDIDDAFKYEFTIDECNKLEHIMWAFGDSIRAYESFGDVVVFETTYRINRYDMPLGIWVGVDNHGNLIFFGCVLLKNEKISSFAWALKNFLAFVQGKYPKTILTDQDPALKEAIKMELPNTKHAFCIWHIVAKLSSWFSFTLGSRYNDFKQEFHKVYHLECADDFEREWKSMVAQFDLCKDNHIDLLFSNREFWALAYLKDFFFAGMTTTGRSESINAYIKRFLGANTSLTDFVNQVGVAVKIRNQAGEEARMCQKYHNPHIRTCFPIEEHAASVLTPYAFKLLQHEIELSTKYAATEIHNGSYIVQHHTKVDGGRQVSWIVEKESIHCSCKEFEFSGILCRHAIRVLMVKNYFSLPSKYLPFRWRQESSLIPKSSHVVNCNATSSTKFQSLIRCLEVESLKTSERERVATRGLEKVIQDIKGMPETQEYVIDLEHDAPNNDVCDVENPIVTKSKCRPRGSRPKGGVEAAKRPRRCHVPRCGGTNHDSRNCPNKKKKIEVLPSQSPNK*