AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG020033


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG020033 MtrunA17_Chr4g0024351 97.687 735 13 3 1 732 1 734 0.0 1475
MsaG020033 MtrunA17_Chr2g0322731 84.615 741 97 7 3 732 36 770 0.0 1251
MsaG020033 MtrunA17_Chr8g0350321 54.752 747 296 11 17 731 74 810 0.0 793
MsaG020033 MtrunA17_Chr7g0246631 57.163 698 264 11 60 731 90 778 0.0 790
MsaG020033 MtrunA17_Chr1g0203671 51.147 741 310 12 28 727 60 789 0.0 736
MsaG020033 MtrunA17_Chr6g0481041 47.548 734 333 13 44 732 2 728 0.0 679
MsaG020033 MtrunA17_Chr5g0410711 43.717 764 379 15 5 731 33 782 0.0 628
MsaG020033 MtrunA17_Chr5g0394111 48.851 696 277 12 45 727 17 646 0.0 623
MsaG020033 MtrunA17_Chr2g0331581 44.609 677 337 10 65 730 143 792 0.0 606
MsaG020033 MtrunA17_Chr6g0472471 44.415 743 358 16 28 727 35 765 0.0 598
MsaG020033 MtrunA17_Chr7g0224451 41.633 490 222 11 44 522 2 438 3.41e-123 375
MsaG020033 MtrunA17_Chr2g0292731 36.566 495 303 7 240 727 58 548 2.51e-103 327
MsaG020033 MtrunA17_Chr2g0292741 37.115 520 299 13 220 727 32 535 1.09e-101 322
MsaG020033 MtrunA17_Chr7g0224481 39.844 384 175 9 44 417 2 339 2.92e-83 268
MsaG020033 MtrunA17_Chr7g0224491 46.708 319 135 10 420 728 1 294 9.82e-81 259
MsaG020033 MtrunA17_Chr2g0292761 31.605 598 346 16 140 729 1 543 1.75e-76 256
MsaG020033 MtrunA17_Chr2g0319671 47.647 170 85 2 299 468 103 268 3.82e-48 172
MsaG020033 MtrunA17_Chr1g0205981 44.560 193 99 4 116 305 1 188 6.33e-39 143
MsaG020033 MtrunA17_Chr5g0419821 48.387 124 63 1 59 181 31 154 5.70e-36 133
MsaG020033 MtrunA17_Chr2g0319691 51.261 119 58 0 360 478 1 119 1.18e-34 129
MsaG020033 MtrunA17_Chr2g0319701 36.522 230 135 5 506 731 5 227 6.26e-34 130
MsaG020033 MtrunA17_Chr2g0319681 34.335 233 146 3 502 731 1 229 6.34e-34 130
MsaG020033 MtrunA17_Chr4g0028991 21.586 769 422 25 45 728 9 681 4.11e-23 105
MsaG020033 MtrunA17_Chr7g0224461 47.934 121 47 5 616 727 1 114 7.39e-22 91.7
MsaG020033 MtrunA17_Chr2g0326731 22.963 540 307 18 64 576 23 480 6.09e-20 95.1
MsaG020033 MtrunA17_Chr2g0304191 31.618 136 83 3 254 384 1 131 1.16e-15 74.3
MsaG020033 MtrunA17_Chr7g0224431 34.375 160 64 4 269 427 1 120 1.76e-15 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG020033 AT1G05230.8 76.152 738 153 8 1 732 1 721 0.0 1127
MsaG020033 AT1G05230.4 76.152 738 153 8 1 732 1 721 0.0 1127
MsaG020033 AT1G05230.9 76.152 738 153 8 1 732 1 721 0.0 1127
MsaG020033 AT1G05230.10 76.152 738 153 8 1 732 1 721 0.0 1127
MsaG020033 AT1G05230.7 76.152 738 153 8 1 732 1 721 0.0 1127
MsaG020033 AT1G05230.11 76.152 738 153 8 1 732 1 721 0.0 1127
MsaG020033 AT1G05230.2 76.152 738 153 8 1 732 1 721 0.0 1127
MsaG020033 AT1G05230.6 76.152 738 153 8 1 732 1 721 0.0 1127
MsaG020033 AT1G05230.5 76.152 738 153 8 1 732 1 721 0.0 1127
MsaG020033 AT1G05230.1 76.152 738 153 8 1 732 1 721 0.0 1127
MsaG020033 AT1G05230.3 75.881 738 153 9 1 732 1 719 0.0 1118
MsaG020033 AT4G04890.2 73.118 744 176 15 1 728 1 736 0.0 1081
MsaG020033 AT4G04890.1 73.118 744 176 15 1 728 1 736 0.0 1081
MsaG020033 AT4G21750.2 70.634 773 175 12 1 732 1 762 0.0 1070
MsaG020033 AT4G21750.1 70.634 773 175 12 1 732 1 762 0.0 1070
MsaG020033 AT4G21750.3 70.634 773 175 12 1 732 1 762 0.0 1070
MsaG020033 AT4G21750.4 70.634 773 175 12 1 732 1 762 0.0 1070
MsaG020033 AT1G05230.12 75.204 613 136 7 1 607 1 603 0.0 935
MsaG020033 AT2G32370.1 53.879 709 294 12 32 732 42 725 0.0 747
MsaG020033 AT3G61150.1 51.852 729 308 9 39 731 86 807 0.0 738
MsaG020033 AT4G00730.1 53.288 730 302 13 20 731 94 802 0.0 728
MsaG020033 AT1G73360.1 48.927 699 318 12 61 732 32 718 0.0 641
MsaG020033 AT1G17920.2 46.241 705 339 11 43 732 7 686 0.0 605
MsaG020033 AT1G17920.1 46.241 705 339 11 43 732 7 686 0.0 605
MsaG020033 AT5G52170.2 44.881 713 329 14 28 727 22 683 0.0 590
MsaG020033 AT5G52170.3 45.021 713 323 16 28 727 22 678 0.0 587
MsaG020033 AT5G52170.1 45.021 713 323 16 28 727 22 678 0.0 587
MsaG020033 AT5G46880.3 43.096 717 355 14 54 729 104 808 0.0 579
MsaG020033 AT5G46880.1 43.096 717 355 14 54 729 104 808 0.0 579
MsaG020033 AT5G46880.2 43.096 717 355 14 54 729 104 808 0.0 579
MsaG020033 AT1G79840.1 42.899 690 349 11 51 730 91 745 0.0 554
MsaG020033 AT1G79840.2 42.899 690 349 11 51 730 120 774 0.0 554
MsaG020033 AT1G79840.3 42.899 690 349 11 51 730 33 687 0.0 553
MsaG020033 AT1G79840.6 42.899 690 349 11 51 730 33 687 0.0 553
MsaG020033 AT4G17710.1 42.206 680 330 13 54 727 81 703 5.27e-175 518
MsaG020033 AT3G03260.1 39.861 720 371 19 45 728 2 695 1.18e-159 478
MsaG020033 AT1G79840.4 43.772 562 275 10 51 603 91 620 9.46e-158 471
MsaG020033 AT4G25530.1 38.955 670 379 9 61 727 40 682 1.72e-147 447
MsaG020033 AT4G00730.2 48.517 472 208 9 28 482 103 556 3.15e-146 439
MsaG020033 AT5G17320.1 36.045 713 397 18 59 730 24 718 1.12e-132 409
MsaG020033 AT1G34650.1 35.188 719 401 19 55 730 12 708 1.20e-124 388
MsaG020033 AT3G03260.2 39.783 553 295 15 45 575 2 538 5.89e-119 368
MsaG020033 AT1G79840.5 43.084 441 210 9 51 482 91 499 2.21e-111 347
MsaG020033 AT5G07260.1 28.312 551 311 21 128 664 11 491 4.04e-48 179
MsaG020033 AT5G07260.2 28.182 550 308 21 128 664 11 486 1.03e-47 177
MsaG020033 AT4G32880.1 22.594 748 411 25 64 731 15 674 8.64e-28 120
MsaG020033 AT1G52150.3 22.642 742 411 28 64 728 17 672 1.23e-25 113
MsaG020033 AT1G52150.1 22.642 742 411 28 64 728 17 672 1.57e-25 113
MsaG020033 AT1G52150.2 22.611 743 411 28 64 728 17 673 2.17e-25 112
MsaG020033 AT4G26920.1 23.191 470 253 18 254 707 72 449 9.62e-16 80.9
MsaG020033 AT5G60690.1 35.714 98 55 2 64 153 25 122 9.97e-12 68.9

Find 191 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTGCCAAAACCAATTTC+TGG 0.191828 4:+43069972 None:intergenic
TCCTTCCTTTGCTTGTCATC+TGG 0.193302 4:+43070924 None:intergenic
ACATACTCTTCCTCCCTTCT+TGG 0.195793 4:+43067854 None:intergenic
CTCCCACCGCGTCCAGAAAT+TGG 0.236347 4:-43069984 MsaT020033.1:CDS
ATTCTTACGCTTCCATTTCT+TGG 0.236795 4:+43071151 None:intergenic
TTGCAATGTGCGCCATTTCT+TGG 0.253615 4:+43067468 None:intergenic
ATGTTGCTCTGGCTCGAATT+TGG 0.272485 4:+43067151 None:intergenic
CCGCGTCCAGAAATTGGTTT+TGG 0.273136 4:-43069978 MsaT020033.1:CDS
AAGGAGTTAAGCAGAGAGTT+AGG 0.279953 4:-43070906 MsaT020033.1:CDS
CCTTCCTTTGCTTGTCATCT+GGG 0.284990 4:+43070925 None:intergenic
GCAGCTATGGAAGAGCTTAT+TGG 0.288607 4:-43069846 MsaT020033.1:CDS
AGCCTTTGCAAGTCAAGTTT+TGG 0.294391 4:-43070878 MsaT020033.1:CDS
CACAAATGGGTGATCCTCTT+TGG 0.301173 4:-43069818 MsaT020033.1:CDS
TTTCGAAGCACTCGTCTTCT+CGG 0.304296 4:+43071283 None:intergenic
CAGCTATGGAAGAGCTTATT+GGG 0.306565 4:-43069845 MsaT020033.1:CDS
ACAGCTAATTCTATTATTAT+CGG 0.310525 4:+43069870 None:intergenic
CATTTGAAACCATTAGGTTT+AGG 0.329662 4:+43069717 None:intergenic
ACGCTTCCATTTCTTGGATC+TGG 0.335305 4:+43071157 None:intergenic
CATGAAGGTGGTACTGCTTC+TGG 0.348652 4:-43071234 MsaT020033.1:CDS
ATCGACTTACATTTACTCTA+AGG 0.352335 4:+43067414 None:intergenic
ATTGCAAATGGACGTGATAC+TGG 0.354415 4:-43067452 MsaT020033.1:CDS
CAGAAGCAGTACCACCTTCA+TGG 0.354926 4:+43071235 None:intergenic
GAGCTGATAACATGAGGTAT+AGG 0.357648 4:-43070686 MsaT020033.1:CDS
AAAACTTGTGCTGGCGGAAC+AGG 0.361955 4:+43067649 None:intergenic
GCTATGAATGTAGTTCTAAA+TGG 0.363093 4:-43067058 MsaT020033.1:CDS
AATGGAGTCGGCGGTGAAAC+TGG 0.366633 4:-43066971 MsaT020033.1:CDS
GGAAGAAGTGCTACATAATC+TGG 0.371226 4:+43067028 None:intergenic
ACAATACCAGGAGGTCTTCC+AGG 0.379421 4:+43067700 None:intergenic
AATACCTTTGAGTAACCATT+TGG 0.385606 4:+43068817 None:intergenic
GGCAGTTGTCGATGTGTCTT+TGG 0.388385 4:-43068908 MsaT020033.1:CDS
AGATGTAGAAGAAGGCCTTC+TGG 0.388784 4:-43068859 MsaT020033.1:CDS
TATCTATGCACCAGTAGATA+TGG 0.395691 4:-43067083 MsaT020033.1:CDS
CTCGTGAGAGTTACTTTGTA+AGG 0.399857 4:-43068960 MsaT020033.1:CDS
GCTTCACATTTGAAACCATT+AGG 0.404072 4:+43069711 None:intergenic
AGGTCGTTTCCTCGTGGGAT+TGG 0.405874 4:-43069741 MsaT020033.1:CDS
GCTATCCTCCCTGATGGAAA+TGG 0.410049 4:-43066995 MsaT020033.1:CDS
TGTGGTGGTCCAACAGCTAT+AGG 0.411505 4:-43070633 MsaT020033.1:CDS
AGAATCAAAGCTTCTTTGTC+TGG 0.414289 4:-43066812 MsaT020033.1:CDS
CTCCCTGATGGAAATGGAAA+TGG 0.415022 4:-43066989 MsaT020033.1:CDS
TATTATCGGTTTGTCTGCTT+CGG 0.415703 4:+43069884 None:intergenic
GTTAGCACTGGACATGCATT+TGG 0.416621 4:-43068162 MsaT020033.1:CDS
GGCGGTGAAACTGGCGGAGG+AGG 0.425667 4:-43066962 MsaT020033.1:CDS
CAATGGTCAACGGTGTTTGC+TGG 0.428126 4:-43069405 MsaT020033.1:CDS
TATGTAGCACTTCTTCCATC+AGG 0.428228 4:-43067022 MsaT020033.1:CDS
CTTTGCTTGTCATCTGGGTG+TGG 0.428946 4:+43070930 None:intergenic
GTTTCAAATGTGAAGCTTCA+AGG 0.431084 4:-43069704 MsaT020033.1:CDS
AGCTGATAACATGAGGTATA+GGG 0.432619 4:-43070685 MsaT020033.1:CDS
GGTGAAACTGGCGGAGGAGG+AGG 0.435046 4:-43066959 MsaT020033.1:CDS
CCAACTGCTAAACTCTCTCT+TGG 0.436250 4:-43066878 MsaT020033.1:CDS
GCTGTTGGACCACCACAATT+AGG 0.438343 4:+43070639 None:intergenic
GCTTATTGGGATGGCACAAA+TGG 0.439156 4:-43069832 MsaT020033.1:CDS
GTAGTATTAACATGTTGCTC+TGG 0.442265 4:+43067140 None:intergenic
GGGATTGGACCTAAACCTAA+TGG 0.443923 4:-43069726 MsaT020033.1:CDS
ACTCCATTTCCATTTCCATC+AGG 0.444605 4:+43066986 None:intergenic
AACAACATCCTGACGGGACA+TGG 0.445961 4:-43068930 MsaT020033.1:CDS
TATTTGTCGCAGTTTCTTCA+AGG 0.446292 4:-43070958 MsaT020033.1:intron
GTGTTGTCAACTGGAGTGGC+AGG 0.446857 4:-43069354 MsaT020033.1:CDS
CATTTGATGAACATCATTTG+AGG 0.446985 4:-43070602 MsaT020033.1:CDS
GGAGGAGGAGGAGCTGGTGC+TGG 0.447028 4:-43066947 MsaT020033.1:CDS
GAGGAAGAGTATGTTGAAAC+TGG 0.447997 4:-43067845 MsaT020033.1:CDS
AATGTTTCAGTCAAACCTCT+TGG 0.448780 4:-43071370 MsaT020033.1:CDS
CACACATGGACAACACTGTC+TGG 0.450880 4:-43067772 MsaT020033.1:CDS
CGTAAGAGTGTCGATGATCC+TGG 0.451139 4:-43067718 MsaT020033.1:CDS
CACTCGTCTTCTCGGATTCG+AGG 0.451326 4:+43071291 None:intergenic
AGAATTAGCTGTTGCAGCTA+TGG 0.453837 4:-43069859 MsaT020033.1:CDS
GAGCCAGTGGAGATATTCTA+AGG 0.455723 4:-43069923 MsaT020033.1:CDS
CGGTGGAGTTGTCCAAGAAA+TGG 0.457380 4:-43067480 MsaT020033.1:CDS
TGCATTTGGTGCAAAACGTT+GGG 0.460920 4:-43068148 MsaT020033.1:CDS
ACAGTGGAGGTGTTGTCAAC+TGG 0.461190 4:-43069363 MsaT020033.1:CDS
CAGTCAAACCTCTTGGAAGC+TGG 0.469434 4:-43071363 MsaT020033.1:CDS
TCAGCACCAGATCCAAGAAA+TGG 0.471078 4:-43071163 MsaT020033.1:CDS
GAAATGGCGCACATTGCAAA+TGG 0.473589 4:-43067464 MsaT020033.1:CDS
ACTGGCGGAGGAGGAGGAGC+TGG 0.473807 4:-43066953 MsaT020033.1:CDS
TGGACAACACTGTCTGGAAC+AGG 0.477040 4:-43067766 MsaT020033.1:CDS
GGAGGAGGAGCTGGTGCTGG+TGG 0.478826 4:-43066944 MsaT020033.1:CDS
AGGAGTTAAGCAGAGAGTTA+GGG 0.480092 4:-43070905 MsaT020033.1:CDS
CTACATCTAGATGAAGGACT+GGG 0.481691 4:+43068874 None:intergenic
CTCCATTTCCATTTCCATCA+GGG 0.484372 4:+43066987 None:intergenic
GACATTTCACCTATAGCTGT+TGG 0.486224 4:+43070624 None:intergenic
TTAATGAAGATGAATATGTT+AGG 0.488862 4:-43069761 MsaT020033.1:CDS
CTCTCACGAGTCGGCACAAG+AGG 0.489363 4:+43068973 None:intergenic
ACAACTGCCCATGTCCCGTC+AGG 0.494676 4:+43068922 None:intergenic
GCAGACACAACATGAACGTT+CGG 0.496911 4:-43070745 MsaT020033.1:intron
ATGTTAGGTCGTTTCCTCGT+GGG 0.513468 4:-43069746 MsaT020033.1:CDS
AGCACAGTAGCAGCTCCATC+AGG 0.513971 4:+43069783 None:intergenic
ATTGGTACAATGGACATGTA+TGG 0.514146 4:-43069945 MsaT020033.1:CDS
GAGAGTGTAACAGATGCAAC+AGG 0.516631 4:-43067115 MsaT020033.1:CDS
TTAATTCAAGAGATGCCAAA+TGG 0.518826 4:-43068832 MsaT020033.1:CDS
CGATGGCAGCGAAGTACGTA+GGG 0.519809 4:-43070043 MsaT020033.1:CDS
AACCAAAACTTGACTTGCAA+AGG 0.523378 4:+43070876 None:intergenic
ATCGGTTTGTCTGCTTCGGT+CGG 0.525191 4:+43069888 None:intergenic
AAACAAAAGGACTCAAATGA+AGG 0.526712 4:-43070850 MsaT020033.1:intron
TTTCAAATGTGAAGCTTCAA+GGG 0.528075 4:-43069703 MsaT020033.1:CDS
CAGCAAACACCGTTGACCAT+TGG 0.528564 4:+43069406 None:intergenic
TACAAGCAGATTGTTAGCAC+TGG 0.528579 4:-43068174 MsaT020033.1:CDS
TTCATAGCAACCATATCTAC+TGG 0.528677 4:+43067073 None:intergenic
ATATATACCGCCAACATCTA+CGG 0.532826 4:+43068065 None:intergenic
CTTATTGGGATGGCACAAAT+GGG 0.536780 4:-43069831 MsaT020033.1:CDS
GGTGGGAATGTTTGTTGCCA+TGG 0.539263 4:+43068086 None:intergenic
GTTGAAACTGGCAGAGAGAA+TGG 0.540573 4:-43067833 MsaT020033.1:CDS
TTTGAAAAGCGACGGTCAGA+AGG 0.541068 4:+43066918 None:intergenic
GATATTCTAAGGTCAATTAG+TGG 0.541194 4:-43069912 MsaT020033.1:CDS
ATGTTTGAATAGTTTACCAC+AGG 0.541643 4:+43070017 None:intergenic
CCAAAACCAATTTCTGGACG+CGG 0.541993 4:+43069978 None:intergenic
CTTCATCTAGATGTAGAAGA+AGG 0.545581 4:-43068867 MsaT020033.1:CDS
GATGATCCTGGAAGACCTCC+TGG 0.545888 4:-43067706 MsaT020033.1:CDS
TTTGCATCATCTCTAATGGA+TGG 0.546858 4:+43071334 None:intergenic
GAAGACGAGTGCTTCGAAAG+TGG 0.546911 4:-43071279 MsaT020033.1:CDS
TAGTGATAACAAACCAAGAA+GGG 0.547679 4:-43067867 MsaT020033.1:CDS
TCTGGACGCGGTGGGAGAGA+TGG 0.548949 4:+43069990 None:intergenic
TTTCCAACATATAGGTGACA+TGG 0.550283 4:-43068239 MsaT020033.1:intron
TTAGTGATAACAAACCAAGA+AGG 0.552241 4:-43067868 MsaT020033.1:intron
CTTCTTCTACATCTAGATGA+AGG 0.552711 4:+43068868 None:intergenic
TCTACATCTAGATGAAGGAC+TGG 0.555194 4:+43068873 None:intergenic
TGGTTAAGTACTACACCTGA+TGG 0.558663 4:-43069798 MsaT020033.1:CDS
TCTGGTGCTGAGTGTGGCGG+TGG 0.558792 4:+43071175 None:intergenic
CAATCAAGGGATTGGTACAA+TGG 0.559479 4:-43069955 MsaT020033.1:CDS
CTTGGATCTGGTGCTGAGTG+TGG 0.562215 4:+43071169 None:intergenic
ATGCATTTGGTGCAAAACGT+TGG 0.567718 4:-43068149 MsaT020033.1:CDS
CAGTGGGATATTCTTTCTAA+CGG 0.572964 4:-43067500 MsaT020033.1:CDS
AACATTCCCACCGTAGATGT+TGG 0.573798 4:-43068075 MsaT020033.1:CDS
CCAAGAGAGAGTTTAGCAGT+TGG 0.575737 4:+43066878 None:intergenic
ATTTGAGGCTTGAAAATGCA+AGG 0.576070 4:-43070587 MsaT020033.1:CDS
TAACCTTGTTGAGATTCTCA+TGG 0.576995 4:-43069652 MsaT020033.1:CDS
GGGAGGATAGCAAATCCTGA+TGG 0.577076 4:+43067007 None:intergenic
TTCCAACATATAGGTGACAT+GGG 0.577979 4:-43068238 MsaT020033.1:intron
TGTTGAGATTCTCATGGATG+TGG 0.578448 4:-43069646 MsaT020033.1:intron
TGACCTTAGAATATCTCCAC+TGG 0.581106 4:+43069920 None:intergenic
ACTCGTCTTCTCGGATTCGA+GGG 0.584124 4:+43071292 None:intergenic
TGTTTCAAGAGCTGTGACAG+TGG 0.585128 4:-43069379 MsaT020033.1:CDS
GGATTTGCTATCCTCCCTGA+TGG 0.589528 4:-43067001 MsaT020033.1:CDS
TATGTTAGGTCGTTTCCTCG+TGG 0.589599 4:-43069747 MsaT020033.1:CDS
AACCAAGATTTGAAAAGCGA+CGG 0.590397 4:+43066910 None:intergenic
GATGGAAATGGAAATGGAGT+CGG 0.592474 4:-43066983 MsaT020033.1:CDS
AGAAGCTTTGATTCTCTCAA+CGG 0.593672 4:+43066820 None:intergenic
ACAACATCCTGACGGGACAT+GGG 0.595244 4:-43068929 MsaT020033.1:CDS
ACGATGGCAGCGAAGTACGT+AGG 0.596635 4:-43070044 MsaT020033.1:CDS
GTGCTTCAACAGCACACACA+TGG 0.598437 4:-43067786 MsaT020033.1:CDS
ATTGTAAACAACATCCTGAC+GGG 0.600101 4:-43068936 MsaT020033.1:CDS
CCCAGATGACAAGCAAAGGA+AGG 0.600252 4:-43070925 MsaT020033.1:CDS
GATGCCAAATGGTTACTCAA+AGG 0.601554 4:-43068821 MsaT020033.1:intron
TGAAAGACTTGCTAGTTCCA+TGG 0.605466 4:-43068103 MsaT020033.1:CDS
ACATGTTGAAGTGGATGAGA+GGG 0.609901 4:-43068211 MsaT020033.1:CDS
AGTCATCACTCTCACATCAT+CGG 0.612975 4:+43067741 None:intergenic
ATATTCTAAGGTCAATTAGT+GGG 0.613763 4:-43069911 MsaT020033.1:CDS
TATGGAAGAGCTTATTGGGA+TGG 0.613912 4:-43069841 MsaT020033.1:CDS
TTGAAAAGCGACGGTCAGAA+GGG 0.614971 4:+43066919 None:intergenic
ATTCCCACCGTAGATGTTGG+CGG 0.617429 4:-43068072 MsaT020033.1:intron
CTACAATGGTGCTTTACAAG+TGG 0.618320 4:-43069328 MsaT020033.1:intron
AAATGCAAGGCTAAGAGAAG+AGG 0.619130 4:-43070574 MsaT020033.1:intron
AACATGTTGAAGTGGATGAG+AGG 0.619221 4:-43068212 MsaT020033.1:CDS
AAACCAATTTCTGGACGCGG+TGG 0.619643 4:+43069981 None:intergenic
CGAGTCGGCACAAGAGGTGA+AGG 0.619674 4:+43068979 None:intergenic
ACTGCTTCTGGTGAAGAACA+AGG 0.621802 4:-43071222 MsaT020033.1:CDS
CACACCCAGATGACAAGCAA+AGG 0.622325 4:-43070929 MsaT020033.1:CDS
GTCGGCGGTGAAACTGGCGG+AGG 0.626051 4:-43066965 MsaT020033.1:CDS
ATGGGTTGAACATGTTGAAG+TGG 0.627085 4:-43068220 MsaT020033.1:CDS
TCTTGAATTAAGCAACCAGA+AGG 0.628017 4:+43068844 None:intergenic
TCCTGCAGTGAAAACCATGA+AGG 0.632264 4:-43071249 MsaT020033.1:CDS
AACCAATTTCTGGACGCGGT+GGG 0.632731 4:+43069982 None:intergenic
ATGGACATGTATGGAGCCAG+TGG 0.634074 4:-43069936 MsaT020033.1:CDS
ATGAATGTAGTTCTAAATGG+AGG 0.639925 4:-43067055 MsaT020033.1:CDS
TATTGTAAACAACATCCTGA+CGG 0.640849 4:-43068937 MsaT020033.1:CDS
TGTTGTCAACTGGAGTGGCA+GGG 0.641410 4:-43069353 MsaT020033.1:CDS
GGAGTCGGCGGTGAAACTGG+CGG 0.641968 4:-43066968 MsaT020033.1:CDS
GCTTCATGTCCTAATTGTGG+TGG 0.643891 4:-43070648 MsaT020033.1:CDS
GGATCTGGTGCTGAGTGTGG+CGG 0.645442 4:+43071172 None:intergenic
ACAAAGTAACTCTCACGAGT+CGG 0.646006 4:+43068964 None:intergenic
TATACCGCCAACATCTACGG+TGG 0.647103 4:+43068068 None:intergenic
AGCTTAGAGCTGATAACATG+AGG 0.647699 4:-43070692 MsaT020033.1:CDS
TGGGATATTCTTTCTAACGG+TGG 0.650199 4:-43067497 MsaT020033.1:CDS
GCAGCACTAAGAACAATACC+AGG 0.650728 4:+43067688 None:intergenic
ATACCGCCAACATCTACGGT+GGG 0.654303 4:+43068069 None:intergenic
GGAGGTGTTGTCAACTGGAG+TGG 0.656092 4:-43069358 MsaT020033.1:CDS
GGTGTAGTACTTAACCAAAG+AGG 0.657817 4:+43069804 None:intergenic
AATGCTTCATGTCCTAATTG+TGG 0.661151 4:-43070651 MsaT020033.1:CDS
TGCAGTGAAAACCATGAAGG+TGG 0.662255 4:-43071246 MsaT020033.1:CDS
TGATAACAAACCAAGAAGGG+AGG 0.664902 4:-43067864 MsaT020033.1:CDS
CATTTCCATTTCCATCAGGG+AGG 0.666915 4:+43066990 None:intergenic
GGAACTGACCAGCTTCCAAG+AGG 0.667277 4:+43071355 None:intergenic
GATTGATAGAATTTCAACGA+TGG 0.671483 4:-43070060 MsaT020033.1:CDS
TTCAAGAGCTGTGACAGTGG+AGG 0.672894 4:-43069376 MsaT020033.1:CDS
CATCCATGAGAATCTCAACA+AGG 0.674971 4:+43069649 None:intergenic
GGAGTGGCAGGGAACTACAA+TGG 0.679417 4:-43069342 MsaT020033.1:CDS
TAACGAGAGCTCCAGAACTG+AGG 0.682761 4:-43067614 MsaT020033.1:intron
CATGTTGAAGTGGATGAGAG+GGG 0.690057 4:-43068210 MsaT020033.1:CDS
GGAAATGGAAATGGAGTCGG+CGG 0.694782 4:-43066980 MsaT020033.1:CDS
TACATCTAGATGAAGGACTG+GGG 0.707753 4:+43068875 None:intergenic
GAAGTACGTAGGGAAGCCTG+TGG 0.754472 4:-43070033 MsaT020033.1:CDS
GGTTTAGGTCCAATCCCACG+AGG 0.756148 4:+43069732 None:intergenic
GCACTAAGAACAATACCAGG+AGG 0.759585 4:+43067691 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr4 gene 43066799 43071391 43066799 ID=MsaG020033
Chr4 mRNA 43066799 43071391 43066799 ID=MsaT020033.1;Parent=MsaG020033
Chr4 exon 43066799 43067176 43066799 ID=MsaT020033.1.exon10;Parent=MsaT020033.1
Chr4 CDS 43066799 43067176 43066799 ID=cds.MsaT020033.1;Parent=MsaT020033.1
Chr4 exon 43067424 43067519 43067424 ID=MsaT020033.1.exon9;Parent=MsaT020033.1
Chr4 CDS 43067424 43067519 43067424 ID=cds.MsaT020033.1;Parent=MsaT020033.1
Chr4 exon 43067615 43067886 43067615 ID=MsaT020033.1.exon8;Parent=MsaT020033.1
Chr4 CDS 43067615 43067886 43067615 ID=cds.MsaT020033.1;Parent=MsaT020033.1
Chr4 exon 43068073 43068247 43068073 ID=MsaT020033.1.exon7;Parent=MsaT020033.1
Chr4 CDS 43068073 43068247 43068073 ID=cds.MsaT020033.1;Parent=MsaT020033.1
Chr4 exon 43068822 43069022 43068822 ID=MsaT020033.1.exon6;Parent=MsaT020033.1
Chr4 CDS 43068822 43069022 43068822 ID=cds.MsaT020033.1;Parent=MsaT020033.1
Chr4 exon 43069329 43069430 43069329 ID=MsaT020033.1.exon5;Parent=MsaT020033.1
Chr4 CDS 43069329 43069430 43069329 ID=cds.MsaT020033.1;Parent=MsaT020033.1
Chr4 exon 43069647 43070081 43069647 ID=MsaT020033.1.exon4;Parent=MsaT020033.1
Chr4 CDS 43069647 43070081 43069647 ID=cds.MsaT020033.1;Parent=MsaT020033.1
Chr4 exon 43070575 43070763 43070575 ID=MsaT020033.1.exon3;Parent=MsaT020033.1
Chr4 CDS 43070575 43070763 43070575 ID=cds.MsaT020033.1;Parent=MsaT020033.1
Chr4 exon 43070851 43070968 43070851 ID=MsaT020033.1.exon2;Parent=MsaT020033.1
Chr4 CDS 43070851 43070968 43070851 ID=cds.MsaT020033.1;Parent=MsaT020033.1
Chr4 exon 43071159 43071391 43071159 ID=MsaT020033.1.exon1;Parent=MsaT020033.1
Chr4 CDS 43071159 43071391 43071159 ID=cds.MsaT020033.1;Parent=MsaT020033.1
Gene Sequence

>MsaT020033.1

ATGTTTCAGTCAAACCTCTTGGAAGCTGGTCAGTTCCATCCATTAGAGATGATGCAAAACACTTCAGAAAGCGATGTCCCTCGAATCCGAGAAGACGAGTGCTTCGAAAGTGGCACCAAATCCTGCAGTGAAAACCATGAAGGTGGTACTGCTTCTGGTGAAGAACAAGGACCACGTCCCAAAAGAAAACGTTACCACCGCCACACTCAGCACCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAGTTAAGCAGAGAGTTAGGGCTTGAGCCTTTGCAAGTCAAGTTTTGGTTTCAAAACAAAAGGACTCAAATGAAGACACAACATGAACGTTCGGAGAATTCTCAGCTAAGAGCAGAAAATGAAAAGCTTAGAGCTGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCTTCATGTCCTAATTGTGGTGGTCCAACAGCTATAGGTGAAATGTCATTTGATGAACATCATTTGAGGCTTGAAAATGCAAGGCTAAGAGAAGAGATTGATAGAATTTCAACGATGGCAGCGAAGTACGTAGGGAAGCCTGTGGTAAACTATTCAAACATTTCACCATCTCTCCCACCGCGTCCAGAAATTGGTTTTGGCAATCAAGGGATTGGTACAATGGACATGTATGGAGCCAGTGGAGATATTCTAAGGTCAATTAGTGGGCCGACCGAAGCAGACAAACCGATAATAATAGAATTAGCTGTTGCAGCTATGGAAGAGCTTATTGGGATGGCACAAATGGGTGATCCTCTTTGGTTAAGTACTACACCTGATGGAGCTGCTACTGTGCTTAATGAAGATGAATATGTTAGGTCGTTTCCTCGTGGGATTGGACCTAAACCTAATGGTTTCAAATGTGAAGCTTCAAGGGAATCTAGCGTTGTTATCATGAATCATGTTAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCAACGGTGTTTGCTGGTATTGTTTCAAGAGCTGTGACAGTGGAGGTGTTGTCAACTGGAGTGGCAGGGAACTACAATGGTGCTTTACAAGTGATGACAGCAGAGTTTCAAGTACCTTCACCTCTTGTGCCGACTCGTGAGAGTTACTTTGTAAGGTATTGTAAACAACATCCTGACGGGACATGGGCAGTTGTCGATGTGTCTTTGGATAATCTGCGCCCCAGTCCTTCATCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAGATGCCAAATGGTTACTCAAAGGTGACATGGGTTGAACATGTTGAAGTGGATGAGAGGGGTGTTCATAATCTATACAAGCAGATTGTTAGCACTGGACATGCATTTGGTGCAAAACGTTGGGTTGCAACTTTAGATCGACAGTGTGAAAGACTTGCTAGTTCCATGGCAACAAACATTCCCACCGTAGATGTTGGCGTGATAACAAACCAAGAAGGGAGGAAGAGTATGTTGAAACTGGCAGAGAGAATGGTGATAAGTTTTTGTGGTGGAGTGAGTGCTTCAACAGCACACACATGGACAACACTGTCTGGAACAGGAGCCGATGATGTGAGAGTGATGACTCGTAAGAGTGTCGATGATCCTGGAAGACCTCCTGGTATTGTTCTTAGTGCTGCTACTTCTTTTTGGCTTCCTGTTCCGCCAGCACAAGTTTTTGAATTTCTTCGTAACGAGAGCTCCAGAACTGAGTGGGATATTCTTTCTAACGGTGGAGTTGTCCAAGAAATGGCGCACATTGCAAATGGACGTGATACTGGAAACTGTGTCTCTCTCCTTAGAGTAAATAGTCCAAATTCGAGCCAGAGCAACATGTTAATACTACAAGAGAGTGTAACAGATGCAACAGGCTCATTTGTTATCTATGCACCAGTAGATATGGTTGCTATGAATGTAGTTCTAAATGGAGGAGATCCAGATTATGTAGCACTTCTTCCATCAGGATTTGCTATCCTCCCTGATGGAAATGGAAATGGAGTCGGCGGTGAAACTGGCGGAGGAGGAGGAGCTGGTGCTGGTGGATCCCTTCTGACCGTCGCTTTTCAAATCTTGGTTGATTCTACTCCAACTGCTAAACTCTCTCTTGGATCAGTTGCTACTGTTAATAGTCTTATTGCTTGTACCGTTGAGAGAATCAAAGCTTCTTTGTCTGGTGAAAGTGCTTAG

Protein sequence

>MsaT020033.1

MFQSNLLEAGQFHPLEMMQNTSESDVPRIREDECFESGTKSCSENHEGGTASGEEQGPRPKRKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERSENSQLRAENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISTMAAKYVGKPVVNYSNISPSLPPRPEIGFGNQGIGTMDMYGASGDILRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLSTTPDGAATVLNEDEYVRSFPRGIGPKPNGFKCEASRESSVVIMNHVNLVEILMDVNQWSTVFAGIVSRAVTVEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYFVRYCKQHPDGTWAVVDVSLDNLRPSPSSRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDERGVHNLYKQIVSTGHAFGAKRWVATLDRQCERLASSMATNIPTVDVGVITNQEGRKSMLKLAERMVISFCGGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPAQVFEFLRNESSRTEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSPNSSQSNMLILQESVTDATGSFVIYAPVDMVAMNVVLNGGDPDYVALLPSGFAILPDGNGNGVGGETGGGGGAGAGGSLLTVAFQILVDSTPTAKLSLGSVATVNSLIACTVERIKASLSGESA*