AlfalfaGEDB | MsaG020186

M. sativa ssp. caerulea / MsaG020186

KEGG: K09338
GO: GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048316 GO:0048366 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020186	XP_003605900.1	98.095	735	10	3	1	732	1	734	0.0	1479

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020186	sp\|Q94C37\|HDG2_ARATH	76.016	738	154	8	1	732	1	721	0.0	1127

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020186	tr\|G7JVZ2\|G7JVZ2_MEDTR	98.095	735	10	3	1	732	1	734	0.0	1479

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TFs/TRs:

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Gene ID	Type	Classification
MsaG020186	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG008286	MsaG020186	0.800617	2.216736e-48	3.039290e-46
MsaG008405	MsaG020186	0.817923	4.466354e-52	9.303836e-50
MsaG020186	MsaG032247	0.801254	1.644775e-48	2.287666e-46
MsaG020186	MsaG035577	0.808277	5.707018e-50	9.349503e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG020186	MtrunA17_Chr4g0024351	98.095	735	10	3	1	732	1	734	1479
MsaG020186	MtrunA17_Chr2g0322731	84.615	741	97	7	3	732	36	770	1251
MsaG020186	MtrunA17_Chr8g0350321	54.886	747	295	11	17	731	74	810	793
MsaG020186	MtrunA17_Chr7g0246631	57.307	698	263	11	60	731	90	778	791
MsaG020186	MtrunA17_Chr1g0203671	51.282	741	309	12	28	727	60	789	737
MsaG020186	MtrunA17_Chr6g0481041	47.411	734	334	13	44	732	2	728	678
MsaG020186	MtrunA17_Chr5g0410711	43.717	764	379	15	5	731	33	782	628
MsaG020186	MtrunA17_Chr5g0394111	48.851	696	277	12	45	727	17	646	624
MsaG020186	MtrunA17_Chr2g0331581	44.461	677	338	10	65	730	143	792	605
MsaG020186	MtrunA17_Chr6g0472471	44.415	743	358	16	28	727	35	765	599

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG020186	AT1G05230.8	76.016	738	154	8	1	732	1	721	1127
MsaG020186	AT1G05230.4	76.016	738	154	8	1	732	1	721	1127
MsaG020186	AT1G05230.9	76.016	738	154	8	1	732	1	721	1127
MsaG020186	AT1G05230.10	76.016	738	154	8	1	732	1	721	1127
MsaG020186	AT1G05230.7	76.016	738	154	8	1	732	1	721	1127
MsaG020186	AT1G05230.11	76.016	738	154	8	1	732	1	721	1127
MsaG020186	AT1G05230.2	76.016	738	154	8	1	732	1	721	1127
MsaG020186	AT1G05230.6	76.016	738	154	8	1	732	1	721	1127
MsaG020186	AT1G05230.5	76.016	738	154	8	1	732	1	721	1127
MsaG020186	AT1G05230.1	76.016	738	154	8	1	732	1	721	1127

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Find 189 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGTGTTGGTGGAAC+AGG	0.354087	4:-46801370	None:intergenic
AAACAAAAGGACTCAGATGA+AGG	0.533633	4:+46798177	MsaT020186.1:CDS
AAACCAATTTCTGGACGCGG+TGG	0.619643	4:-46799054	None:intergenic
AAATGCAAGGCTAAGAGAAG+AGG	0.619130	4:+46798456	MsaT020186.1:CDS
AACAACATCCTGACGGGACA+TGG	0.445961	4:+46800113	MsaT020186.1:CDS
AACATGTAGAAGTGGATGAG+AGG	0.585664	4:+46800816	MsaT020186.1:CDS
AACATTCCCACTGTCGATGT+TGG	0.559966	4:+46800953	MsaT020186.1:CDS
AACCAAAACTTGACTTGCAA+AGG	0.523378	4:-46798151	None:intergenic
AACCAAGATTTGAAAAGCGA+CGG	0.590397	4:-46802109	None:intergenic
AACCAATTTCTGGACGCGGT+GGG	0.632731	4:-46799053	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	46797690	46802242	46797690	ID=MsaG020186
Chr4	mRNA	46797690	46802242	46797690	ID=MsaT020186.1;Parent=MsaG020186
Chr4	exon	46797690	46797922	46797690	ID=MsaT020186.1.exon1;Parent=MsaT020186.1
Chr4	CDS	46797690	46797922	46797690	ID=cds.MsaT020186.1;Parent=MsaT020186.1
Chr4	exon	46798081	46798198	46798081	ID=MsaT020186.1.exon2;Parent=MsaT020186.1
Chr4	CDS	46798081	46798198	46798081	ID=cds.MsaT020186.1;Parent=MsaT020186.1
Chr4	exon	46798289	46798477	46798289	ID=MsaT020186.1.exon3;Parent=MsaT020186.1
Chr4	CDS	46798289	46798477	46798289	ID=cds.MsaT020186.1;Parent=MsaT020186.1
Chr4	exon	46798976	46799410	46798976	ID=MsaT020186.1.exon4;Parent=MsaT020186.1
Chr4	CDS	46798976	46799410	46798976	ID=cds.MsaT020186.1;Parent=MsaT020186.1
Chr4	exon	46799635	46799736	46799635	ID=MsaT020186.1.exon5;Parent=MsaT020186.1
Chr4	CDS	46799635	46799736	46799635	ID=cds.MsaT020186.1;Parent=MsaT020186.1
Chr4	exon	46800043	46800243	46800043	ID=MsaT020186.1.exon6;Parent=MsaT020186.1
Chr4	CDS	46800043	46800243	46800043	ID=cds.MsaT020186.1;Parent=MsaT020186.1
Chr4	exon	46800803	46800977	46800803	ID=MsaT020186.1.exon7;Parent=MsaT020186.1
Chr4	CDS	46800803	46800977	46800803	ID=cds.MsaT020186.1;Parent=MsaT020186.1
Chr4	exon	46801155	46801426	46801155	ID=MsaT020186.1.exon8;Parent=MsaT020186.1
Chr4	CDS	46801155	46801426	46801155	ID=cds.MsaT020186.1;Parent=MsaT020186.1
Chr4	exon	46801522	46801617	46801522	ID=MsaT020186.1.exon9;Parent=MsaT020186.1
Chr4	CDS	46801522	46801617	46801522	ID=cds.MsaT020186.1;Parent=MsaT020186.1
Chr4	exon	46801865	46802242	46801865	ID=MsaT020186.1.exon10;Parent=MsaT020186.1
Chr4	CDS	46801865	46802242	46801865	ID=cds.MsaT020186.1;Parent=MsaT020186.1

Gene Sequence

>MsaT020186.1

ATGTTTCAGTCAAACCTCTTGGAAGCTGGTCAGTTCCATCCATTAGAGATGATGCAAAACACTTCAGAAAGCGATGTCCCTCGAATCCGAGAAGACGAGTGCTTCGAAAGTGGCACCAAATCCTGCAGTGAAAACCATGAAGGTGGTGCTGCTTCTGGTGAAGAACAAGGACCACGTCCCAAAAGAAAACGTTATCACCGCCACACTCAGCACCAGATCCAAGAAATGGAATCTTTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAGTTAAGCAGAGAGTTAGGGCTAGAGCCTTTGCAAGTCAAGTTTTGGTTTCAAAACAAAAGGACTCAGATGAAGACACAACATGAACGTTCGGAGAATTCTCAACTAAGAGCAGAAAATGAAAAGCTTAGAGCTGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCTTCATGTCCTAATTGTGGTGGTCCAACAGCTATAGGTGAAATGTCATTTGATGAACATCATTTGAGGCTTGAAAATGCAAGGCTAAGAGAAGAGATTGATAGAATTTCAACGATGGCAGCGAAGTACGTAGGGAAGCCTGTGGTAAACTATTCAAACATTTCACCATCTCTCCCACCGCGTCCAGAAATTGGTTTTGGCAATCAAGGGATTGGTACAATGGACATGTATGGAGCCAGTGGAGATATTCTAAGGTCAATTAGTGGGCCGACCGAAGCAGACAAACCGATAATAATAGAATTAGCTGTTGCAGCTATGGAAGAGCTTATTGGGATGGCACAAATGGGTGATCCTCTTTGGTTAAGTACTACACCTGATGGAGCTGCTACTGTGCTTAATGAAGATGAATATGTTAGGTCGTTTCCTCGTGGGATTGGACCTAAACCTAATGGTTTTAAATGTGAAGCTTCGAGGGAATCTAGCGTTGTTATCATGAATCATGTTAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCAACGGTGTTTGCTGGTATTGTTTCAAGAGCTGTGACTGTGGAAGTGTTGTCAACTGGAGTGGCAGGGAACTACAATGGTGCTTTACAAGTGATGACAGCAGAGTTTCAAGTACCTTCACCTCTTGTGCCGACTCGTGAGAGTTACTTTGTAAGGTATTGTAAACAACATCCTGACGGGACATGGGCAGTTGTCGATGTGTCTTTGGATAATCTGCGCCCCAGTCCTTCATCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTGATTCAAGAGATGCCAAATGGTTACTCAAAGGTGACATGGGTTGAACATGTAGAAGTGGATGAGAGGGGTGTTCATAATCTATACAAGCAGATTGTTAGCACTGGACATGCATTTGGTGCAAAACGTTGGGTTGCAACTTTAGATCGACAATGCGAAAGGCTTGCTAGCTCCATGGCAACAAACATTCCCACTGTCGATGTTGGCGTGATAACAAACCAAGAAGGAAGGAAGAGTATGTTGAAACTGGCAGAGAGAATGGTTATAAGTTTCTGTGGTGGAGTGAGTGCTTCAACAGCACACACATGGACAACATTGTCTGGAACAGGAGCCGATGATGTGAGAGTGATGACTCGTAAGAGTGTCGATGATCCTGGAAGACCTCCTGGTATTGTTCTTAGTGCTGCTACTTCTTTTTGGCTTCCTGTTCCACCAACACAAGTTTTTGAATTTCTTCGGAACGAGAGCTCCAGAACTGAGTGGGATATTCTTTCTAACGGTGGAGTTGTCCAAGAAATGGCGCACATTGCAAATGGACGTGATACTGGAAACTGTGTCTCTCTCCTTAGAGTAAATAGTCCAAATTCGAGCCAGAGCAACATGTTAATACTACAAGAGAGTGTAACAGATGCAACAGGCTCATTTGTTATCTATGCACCGGTAGATATGGTTGCTATGAATGTAGTTCTAAATGGAGGAGATCCAGATTATGTAGCACTTCTTCCATCAGGATTTGCTATCCTCCCTGATGGAAATGGAAATGGAGTCGGCGGTGAAACTGGCGGAGGAGGAGGAGCTGGTGCTGGTGGATCCCTTCTGACCGTCGCTTTTCAAATCTTGGTTGATTCTACTCCAACTGCTAAACTCTCTCTTGGATCAGTTGCTACTGTTAATAGTCTTATTGCTTGTACTGTCGAGAGAATCAAAGCTTCTTTATCCGGTGAAAGTGCTTAG

Protein sequence

>MsaT020186.1

MFQSNLLEAGQFHPLEMMQNTSESDVPRIREDECFESGTKSCSENHEGGAASGEEQGPRPKRKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERSENSQLRAENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISTMAAKYVGKPVVNYSNISPSLPPRPEIGFGNQGIGTMDMYGASGDILRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLSTTPDGAATVLNEDEYVRSFPRGIGPKPNGFKCEASRESSVVIMNHVNLVEILMDVNQWSTVFAGIVSRAVTVEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYFVRYCKQHPDGTWAVVDVSLDNLRPSPSSRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDERGVHNLYKQIVSTGHAFGAKRWVATLDRQCERLASSMATNIPTVDVGVITNQEGRKSMLKLAERMVISFCGGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPTQVFEFLRNESSRTEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSPNSSQSNMLILQESVTDATGSFVIYAPVDMVAMNVVLNGGDPDYVALLPSGFAILPDGNGNGVGGETGGGGGAGAGGSLLTVAFQILVDSTPTAKLSLGSVATVNSLIACTVERIKASLSGESA*